AT2G37340

Serine arginine-rich splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005963
Physical Location & Seq
Reverse (-)
15670147 .. 15672700
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37340.3

Sequence Viewer

Length: 873 bp
ATGCCTCGCTATGATGATCGCTATGGGAACACTCGTCTTTACGTTGGCCGATTATCATCGAGAACTAGGACCCGAGACCTTGAACGTCTTTTTAGCAGATACGGAAGAGTGCGAGATGTGGATATGAAGCGAGATTATGCTTTCGTTGAATTTGGTGATCCCCGTGATGCTGATGATGCAAGACATTACCTGGACGGACGAGACTTTGATGGAAGTCGCATCACTGTGGAGTTTTCACGAGGGGCACCTCGTGGTTCTCGGGATTTTGATAGCAGAGGCCCACCACCTGGAGCTGGTCGCTGTTTTAACTGTGGTGTAGATGGTCATTGGGCTCGTGACTGCACAGCAGGGGACTGGAAGAACAAGTGTTACCGTTGTGGAGAGAGAGGACACATTGAGAGAAACTGCAAAAACAGCCCCAAGAAGCTTAGGCGCAGTGGAAGCTACTCCAGGTCACCTGTAAGATCCCGTTCTCCTCGTCGTAGAAGAAGCCCAAGCCGGAGTCTTAGCCGTAGCCGAAGCTACAGCCGATCACGATCCCCGGTGAGAAGAAGAGAGAGGAGTGTGGAGGAGAGATCACGCAGTCCAAAGCGGATGGATGACTCTCTATCGCCAAGAGCCAGAGATCGTAGTCCGGTTCTTGATGATGAAGGCAGCCCAAAGATCATAGACGGGAGCCCACCACCATCACCAAAGCTTCAAAAGGAAGTCGGATCTGACCGTGACGGTGGTAGCCCCCAAGACAATGGCAGAAACTCTGTTGTCAGTCCTGTTGTAGGAGCCGGTGGTGACAGTTCGAAAGAGGACCGGAGCCCTGTTGATGATGATTACGAGCCAAACCGCACTTCCCCTAGAGGAAGTGAGTCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034622 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 zf-CCHC

Protein Analysis

290

Amino Acids

32.89

Weight (kDa)

10.17

Isoelectric Point (pI)

97.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 59 - 74 5.4e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 287
AciI CCGC 2 cut(s) 592, 841
AclWI GGATC 4 cut(s) 152, 459, 531, 721
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 149
AdeI CACNNNGTG 1 cut(s) 251
AfiI CCNNNNNNNGG 3 cut(s) 287, 293, 776
AgsI TTSAA 3 cut(s) 83, 149, 701
AjnI CCWGG 3 cut(s) 189, 286, 449
AjuI GAANNNNNNNTTGG 2 cut(s) 829, 861
AluBI AGCT 5 cut(s) 293, 427, 444, 522, 697
AluI AGCT 5 cut(s) 293, 427, 444, 522, 697
Alw26I GTCTC 2 cut(s) 69, 195
AlwI GGATC 4 cut(s) 152, 459, 531, 721
Ama87I CYCGRG 2 cut(s) 72, 258
AoxI GGCC 2 cut(s) 46, 277
ApeKI GCWGC 1 cut(s) 654
ApoI RAATTY 1 cut(s) 149
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 3 cut(s) 69, 278, 805
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 5 cut(s) 167, 447, 556, 681, 800
AsuII TTCGAA 1 cut(s) 797
AvaI CYCGRG 2 cut(s) 72, 258
AvaII GGWCC 2 cut(s) 69, 805
BaeGI GKGCMC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 3 cut(s) 334, 680, 815
BauI CACGAG 3 cut(s) 237, 249, 333
BbvI GCAGC 1 cut(s) 666
BccI CCATC 4 cut(s) 203, 314, 589, 694
BceAI ACGGC 1 cut(s) 495
BciT130I CCWGG 3 cut(s) 191, 288, 451
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 2 cut(s) 69, 195
BfaI CTAG 2 cut(s) 66, 852
BfmI CTRYAG 1 cut(s) 523
BisI GCNGC 1 cut(s) 655
BlsI GCNGC 1 cut(s) 656
Bme1390I CCNGG 4 cut(s) 191, 288, 451, 542
Bme18I GGWCC 2 cut(s) 69, 805
BmeT110I CYCGRG 2 cut(s) 72, 258
BmgT120I GGNCC 3 cut(s) 69, 278, 805
BmiI GGNNCC 5 cut(s) 71, 246, 677, 781, 812
BmrFI CCNGG 4 cut(s) 191, 288, 451, 542
BmsI GCATC 3 cut(s) 157, 166, 228
BpmI CTGGAG 2 cut(s) 309, 433
Bpu10I CCTNAGC 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 797
BpuMI CCSGG 1 cut(s) 542
BsaBI GATNNNNATC 2 cut(s) 55, 535
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 540
BsaWI WCCGGW 2 cut(s) 634, 807
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 293, 776
Bse118I RCCGGY 1 cut(s) 782
Bse1I ACTGG 1 cut(s) 359
Bse8I GATNNNNATC 2 cut(s) 55, 535
BseBI CCWGG 3 cut(s) 191, 288, 451
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 2 cut(s) 600, 604
BseJI GATNNNNATC 2 cut(s) 55, 535
BseLI CCNNNNNNNGG 3 cut(s) 287, 293, 776
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 3 cut(s) 465, 574, 584
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 1 cut(s) 666
BsgI GTGCAG 1 cut(s) 325
BshFI GGCC 2 cut(s) 48, 279
BshNI GGYRCC 1 cut(s) 244
BsiHKCI CYCGRG 2 cut(s) 72, 258
BsiSI CCGG 5 cut(s) 499, 542, 635, 783, 808
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 3 cut(s) 287, 293, 776
BsmAI GTCTC 2 cut(s) 69, 195
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 2 cut(s) 48, 279
Bso31I GGTCTC 1 cut(s) 69
BsoBI CYCGRG 2 cut(s) 72, 258
Bsp119I TTCGAA 1 cut(s) 797
Bsp1286I GDGCHC 4 cut(s) 247, 334, 680, 815
Bsp143I GATC 9 cut(s) 16, 157, 464, 530, 536, 575, 625, 663, 713
BspACI CCGC 2 cut(s) 592, 841
BspANI GGCC 2 cut(s) 48, 279
BspLI GGNNCC 5 cut(s) 71, 246, 677, 781, 812
BspPI GGATC 4 cut(s) 152, 459, 531, 721
BspT104I TTCGAA 1 cut(s) 797
BspT107I GGYRCC 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 782
BsrI ACTGG 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 782
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 9 cut(s) 16, 157, 464, 530, 536, 575, 625, 663, 713
BssSI CACGAG 3 cut(s) 237, 249, 333
Bst2BI CACGAG 3 cut(s) 237, 249, 333
Bst2UI CCWGG 3 cut(s) 191, 288, 451
Bst4CI ACNGT 6 cut(s) 226, 311, 374, 722, 728, 794
Bst6I CTCTTC 2 cut(s) 100, 547
BstBI TTCGAA 1 cut(s) 797
BstDEI CTNAG 2 cut(s) 428, 506
BstEII GGTNACC 1 cut(s) 453
BstENI CCTNNNNNAGG 1 cut(s) 774
BstF5I GGATG 2 cut(s) 600, 604
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 9 cut(s) 19, 160, 467, 533, 539, 578, 628, 666, 716
BstMAI GTCTC 2 cut(s) 69, 195
BstMBI GATC 9 cut(s) 16, 157, 464, 530, 536, 575, 625, 663, 713
BstMWI GCNNNNNNNGC 3 cut(s) 176, 414, 441
BstNI CCWGG 3 cut(s) 191, 288, 451
BstPI GGTNACC 1 cut(s) 453
BstSCI CCNGG 4 cut(s) 189, 286, 449, 540
BstSFI CTRYAG 1 cut(s) 523
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 666
BstX2I RGATCY 2 cut(s) 464, 713
BstXI CCANNNNNNTGG 1 cut(s) 746
BstYI RGATCY 2 cut(s) 464, 713
BsuRI GGCC 2 cut(s) 48, 279
BtsCI GGATG 2 cut(s) 600, 604
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 2 cut(s) 222, 442
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 782
Cfr13I GGNCC 3 cut(s) 69, 278, 805
DdeI CTNAG 2 cut(s) 428, 506
DpnI GATC 9 cut(s) 18, 159, 466, 532, 538, 577, 627, 665, 715
DpnII GATC 9 cut(s) 16, 157, 464, 530, 536, 575, 625, 663, 713
DraIII CACNNNGTG 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 100, 547
EarI CTCTTC 2 cut(s) 100, 547
Eco24I GRGCYC 3 cut(s) 334, 680, 815
Eco31I GGTCTC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 69, 805
Eco88I CYCGRG 2 cut(s) 72, 258
Eco91I GGTNACC 1 cut(s) 453
EcoNI CCTNNNNNAGG 1 cut(s) 774
EcoO109I RGGNCCY 1 cut(s) 69
EcoO65I GGTNACC 1 cut(s) 453
EcoRII CCWGG 3 cut(s) 189, 286, 449
EcoT38I GRGCYC 3 cut(s) 334, 680, 815
FaiI YATR 5 cut(s) 12, 24, 125, 138, 668
FaqI GGGAC 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 655
FokI GGATG 2 cut(s) 607, 611
FriOI GRGCYC 3 cut(s) 334, 680, 815
Fsp4HI GCNGC 1 cut(s) 655
FspBI CTAG 2 cut(s) 66, 852
GlaI GCGC 1 cut(s) 434
GluI GCNGC 1 cut(s) 655
GsuI CTGGAG 2 cut(s) 309, 433
HaeIII GGCC 2 cut(s) 48, 279
HapII CCGG 5 cut(s) 499, 542, 635, 783, 808
HhaI GCGC 1 cut(s) 435
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HindIII AAGCTT 2 cut(s) 425, 695
HinfI GANTC 3 cut(s) 502, 602, 863
HpaII CCGG 5 cut(s) 499, 542, 635, 783, 808
HphI GGTGA 5 cut(s) 167, 447, 556, 681, 800
Hpy188I TCNGA 2 cut(s) 713, 718
Hpy188III TCNNGA 6 cut(s) 60, 237, 260, 335, 534, 641
Hpy99I CGWCG 1 cut(s) 483
HpyAV CCTTC 1 cut(s) 644
HpyCH4III ACNGT 6 cut(s) 226, 311, 374, 722, 728, 794
HpyCH4IV ACGT 2 cut(s) 42, 85
HpyCH4V TGCA 3 cut(s) 179, 342, 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 414, 441
HpyF3I CTNAG 2 cut(s) 428, 506
HpySE526I ACGT 2 cut(s) 42, 85
HspAI GCGC 1 cut(s) 433
Kzo9I GATC 9 cut(s) 16, 157, 464, 530, 536, 575, 625, 663, 713
LmnI GCTCC 4 cut(s) 290, 675, 779, 810
Lsp1109I GCAGC 1 cut(s) 666
LweI GCATC 3 cut(s) 157, 166, 228
MaeI CTAG 2 cut(s) 66, 852
MaeII ACGT 2 cut(s) 42, 85
MaeIII GTNAC 5 cut(s) 335, 368, 453, 722, 788
MalI GATC 9 cut(s) 18, 159, 466, 532, 538, 577, 627, 665, 715
MboI GATC 9 cut(s) 16, 157, 464, 530, 536, 575, 625, 663, 713
MboII GAAGA 5 cut(s) 117, 370, 498, 561, 564
MflI RGATCY 2 cut(s) 464, 713
MhlI GDGCHC 4 cut(s) 247, 334, 680, 815
MluCI AATT 1 cut(s) 149
MlyI GAGTC 3 cut(s) 511, 596, 872
MmeI TCCRAC 1 cut(s) 691
MseI TTAA 2 cut(s) 306, 871
MslI CAYNNNNRTG 1 cut(s) 224
MspI CCGG 5 cut(s) 499, 542, 635, 783, 808
MspR9I CCNGG 4 cut(s) 191, 288, 451, 542
MvaI CCWGG 3 cut(s) 191, 288, 451
MwoI GCNNNNNNNGC 3 cut(s) 176, 414, 441
NciI CCSGG 1 cut(s) 542
NdeII GATC 9 cut(s) 16, 157, 464, 530, 536, 575, 625, 663, 713
NlaIV GGNNCC 5 cut(s) 71, 246, 677, 781, 812
NmuCI GTSAC 4 cut(s) 335, 453, 722, 788
NspV TTCGAA 1 cut(s) 797
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 1 cut(s) 656
PleI GAGTC 3 cut(s) 510, 596, 871
PpsI GAGTC 3 cut(s) 510, 596, 871
PpuMI RGGWCCY 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 69
Psp6I CCWGG 3 cut(s) 189, 286, 449
PspEI GGTNACC 1 cut(s) 453
PspGI CCWGG 3 cut(s) 189, 286, 449
PspN4I GGNNCC 5 cut(s) 71, 246, 677, 781, 812
PspPI GGNCC 3 cut(s) 69, 278, 805
PspPPI RGGWCCY 1 cut(s) 69
PsrI GAACNNNNNNTAC 2 cut(s) 353, 385
PsuI RGATCY 2 cut(s) 464, 713
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 2 cut(s) 306, 871
SatI GCNGC 1 cut(s) 655
Sau3AI GATC 9 cut(s) 16, 157, 464, 530, 536, 575, 625, 663, 713
Sau96I GGNCC 3 cut(s) 69, 278, 805
SchI GAGTC 3 cut(s) 511, 596, 872
ScrFI CCNGG 4 cut(s) 191, 288, 451, 542
SduI GDGCHC 4 cut(s) 247, 334, 680, 815
SfaNI GCATC 3 cut(s) 157, 166, 228
SfcI CTRYAG 1 cut(s) 523
SfuI TTCGAA 1 cut(s) 797
SinI GGWCC 2 cut(s) 69, 805
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 1 cut(s) 149
SsiI CCGC 2 cut(s) 592, 841
SspMI CTAG 2 cut(s) 66, 852
StyD4I CCNGG 4 cut(s) 189, 286, 449, 540
TaaI ACNGT 6 cut(s) 226, 311, 374, 722, 728, 794
TaiI ACGT 2 cut(s) 45, 88
TaqI TCGA 2 cut(s) 59, 797
TasI AATT 1 cut(s) 149
Tru1I TTAA 2 cut(s) 306, 871
Tru9I TTAA 2 cut(s) 306, 871
TscAI CASTG 2 cut(s) 229, 442
TseFI GTSAC 4 cut(s) 335, 453, 722, 788
TseI GCWGC 1 cut(s) 654
Tsp45I GTSAC 4 cut(s) 335, 453, 722, 788
TspDTI ATGAA 2 cut(s) 140, 663
TspGWI ACGGA 2 cut(s) 117, 210
TspRI CASTG 2 cut(s) 229, 442
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 69, 805
XagI CCTNNNNNAGG 1 cut(s) 774
XapI RAATTY 1 cut(s) 149
XspI CTAG 2 cut(s) 66, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.