Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005963

Physical Location & Seq

Genomic Coordinates Reverse (-)

24290736 .. 24294145

Gene Structure 3410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G246100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCCTCGTTATGATGATCGATATGGCAATACACGCCTATATGTTGGTCGTTTGGCTTCACGCACGCGTTCACGTGATCTGGAACGCCTTTTCAGCAGATATGGCAGAGTACGAGATGTGGACATGAAGCGAGAGTTTGCGTTTGTTGAATTTAGTGATCCTCGAGATGCTGATGATGCCAGATATAGCTTAGATGGTCGGGAGTTTGATGGAACTCGTCTTATTGTTGAATTTGCAAAGGGGGGACCGCGTGGTTCCCGGGAATATCTGGGAAGAGGTCCTACTCCTGGGTCTGGTCGTTGCTTTAATTGTGGTATTGATGGCCACTGGGCTCGTGATTGCAAGGCTGGGGACTGGAAGAATAAATGCTATCGCTGTGGAGAAAGAGGTCATATAGAAAGGCAGTGCAAAAATAGTCCCAAGGAGTTAAGGCGTGGGCGGAGTCGTTCACCTGGATCACGTTCGCCTCGCCGTGGGAGAAGCCGTAGCCCAAGTTACAGCCGAAGCCGCAGCTATAGTCGATCAAGATCCCCAGTAAGGAGAGGGAGAAGCCGAAGCCTGGATCGTTATGACAGATCACTGAGCCCTCCTTACAGGAAGAGTCCACCGCCCTCAAAGGGGAGGAAGCACAGCCTTACACCTGATGAAGGCAGCCCCCGTGGGAGAGGTAGCCCTTCTCCCAGAAATGGTAGACTCAGCACAGAGCGAGATGGCTCAGAATACAGTCCCAGGGGAAATAGTAGAAGTCCAGTTAGCCCCATAGGGAAAAGCAGAAGCCCGAGTAGCCCTGGAAGGGATAGCCCTAGTGTTGGGAAGTACCCGAGCCCTACTGAAACTAATGGTCGCAGCCCCAGTCCAAGGGACGATAGGAGCCCTGTTGATTATGAGGATGGACGCAGTCCGTCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034622 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

304

Amino Acids

34.24

Weight (kDa)

10.81

Isoelectric Point (pI)

89.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37340 AT2G37340 AT2G37340 AT2G37340 AT2G37340 AT2G37340 AT3G53500 AT3G53500 AT3G53500
fragaria_vesca	FvH4_6g14771 FvH4_6g14771 FvH4_6g14771 FvH4_6g14771
malus_domestica	MD12G1131700.v1.1
prunus_persica	Prupe.6G246100_v2.0.a1 Prupe.6G246100_v2.0.a1 Prupe.6G246100_v2.0.a1
pyrus_communis	pycom12g12750
rosa_chinensis	RchiOBHm_Chr3g0468001
rosa_roxburghii	Rroxscaffold_6G00413220
rosa_rugosa	Rorug03G0091100 Rorug03G0091100 Rorug03G0091200
rosa_samantha	Rh3AG139800 Rh3CG161200 Rh3DG161700
rosa_wichuraiana	Rw3G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	691
AccII	CGCG	2 cut(s)	67, 250
AciI	CCGC	4 cut(s)	248, 439, 508, 608
AclWI	GGATC	4 cut(s)	152, 463, 522, 570
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	149, 230
AcvI	CACGTG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	111, 818
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	149, 230
AjnI	CCWGG	5 cut(s)	286, 451, 558, 728, 787
AluBI	AGCT	2 cut(s)	189, 513
AluI	AGCT	2 cut(s)	189, 513
AlwI	GGATC	4 cut(s)	152, 463, 522, 570
Ama87I	CYCGRG	4 cut(s)	162, 258, 778, 820
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	3 cut(s)	510, 651, 846
ApoI	RAATTY	2 cut(s)	149, 230
AspS9I	GGNCC	2 cut(s)	245, 278
AsuC2I	CCSGG	2 cut(s)	259, 260
AsuHPI	GGTGA	2 cut(s)	441, 897
AvaI	CYCGRG	4 cut(s)	162, 258, 778, 820
AvaII	GGWCC	2 cut(s)	245, 278
BalI	TGGCCA	1 cut(s)	324
BanII	GRGCYC	4 cut(s)	334, 587, 827, 875
BarI	GAAGNNNNNNTAC	2 cut(s)	265, 297
BauI	CACGAG	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	74
BbvI	GCAGC	3 cut(s)	522, 663, 858
BccI	CCATC	5 cut(s)	188, 203, 314, 704, 884
BceAI	ACGGC	2 cut(s)	456, 468
BciT130I	CCWGG	5 cut(s)	288, 453, 560, 730, 789
BcnI	CCSGG	2 cut(s)	259, 260
BfaI	CTAG	2 cut(s)	804, 910
BfmI	CTRYAG	1 cut(s)	514
BisI	GCNGC	4 cut(s)	508, 511, 652, 847
BlsI	GCNGC	4 cut(s)	509, 512, 653, 848
Bme1390I	CCNGG	7 cut(s)	259, 260, 288, 453, 560, 730, 789
Bme18I	GGWCC	2 cut(s)	245, 278
BmeT110I	CYCGRG	4 cut(s)	162, 258, 778, 820
BmgT120I	GGNCC	2 cut(s)	245, 278
BmiI	GGNNCC	3 cut(s)	246, 256, 872
BmrFI	CCNGG	7 cut(s)	259, 260, 288, 453, 560, 730, 789
BmrI	ACTGGG	3 cut(s)	337, 527, 846
BmsI	GCATC	2 cut(s)	157, 166
BmuI	ACTGGG	3 cut(s)	337, 527, 846
BpuMI	CCSGG	2 cut(s)	259, 260
Bsa29I	ATCGAT	1 cut(s)	19
BsaAI	YACGTR	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	526
BsaJI	CCNNGG	9 cut(s)	258, 287, 420, 472, 658, 728, 729, 787, 857
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bse1I	ACTGG	5 cut(s)	332, 359, 533, 749, 852
Bse8I	GATNNNNATC	1 cut(s)	526
BseBI	CCWGG	5 cut(s)	288, 453, 560, 730, 789
BseCI	ATCGAT	1 cut(s)	19
BseDI	CCNNGG	9 cut(s)	258, 287, 420, 472, 658, 728, 729, 787, 857
BseGI	GGATG	1 cut(s)	895
BseJI	GATNNNNATC	1 cut(s)	526
BseMII	CTCAG	3 cut(s)	572, 709, 729
BseNI	ACTGG	5 cut(s)	332, 359, 533, 749, 852
BseXI	GCAGC	3 cut(s)	522, 663, 858
BseYI	CCCAGC	1 cut(s)	347
Bsh1236I	CGCG	2 cut(s)	67, 250
BshFI	GGCC	1 cut(s)	324
BshVI	ATCGAT	1 cut(s)	19
BsiHKCI	CYCGRG	4 cut(s)	162, 258, 778, 820
BsiSI	CCGG	1 cut(s)	259
BslFI	GGGAC	5 cut(s)	258, 365, 402, 711, 875
BsmFI	GGGAC	5 cut(s)	258, 365, 402, 711, 875
BsnI	GGCC	1 cut(s)	324
BsoBI	CYCGRG	4 cut(s)	162, 258, 778, 820
Bsp1286I	GDGCHC	4 cut(s)	334, 587, 827, 875
Bsp143I	GATC	8 cut(s)	16, 76, 157, 455, 521, 527, 562, 575
BspACI	CCGC	4 cut(s)	248, 439, 508, 608
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	3 cut(s)	573, 708, 728
BspDI	ATCGAT	1 cut(s)	19
BspFNI	CGCG	2 cut(s)	67, 250
BspLI	GGNNCC	3 cut(s)	246, 256, 872
BspPI	GGATC	4 cut(s)	152, 463, 522, 570
BsrI	ACTGG	5 cut(s)	332, 359, 533, 749, 852
BssECI	CCNNGG	9 cut(s)	258, 287, 420, 472, 658, 728, 729, 787, 857
BssMI	GATC	8 cut(s)	16, 76, 157, 455, 521, 527, 562, 575
BssSI	CACGAG	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	420, 857
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	5 cut(s)	288, 453, 560, 730, 789
Bst4CI	ACNGT	1 cut(s)	725
Bst6I	CTCTTC	2 cut(s)	268, 593
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	4 cut(s)	190, 581, 695, 715
BstDSI	CCRYGG	2 cut(s)	472, 658
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	1 cut(s)	895
BstFNI	CGCG	2 cut(s)	67, 250
BstKTI	GATC	8 cut(s)	19, 79, 160, 458, 524, 530, 565, 578
BstMBI	GATC	8 cut(s)	16, 76, 157, 455, 521, 527, 562, 575
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 93, 102, 176, 507, 783
BstNI	CCWGG	5 cut(s)	288, 453, 560, 730, 789
BstSCI	CCNGG	7 cut(s)	257, 258, 286, 451, 558, 728, 787
BstSFI	CTRYAG	1 cut(s)	514
BstUI	CGCG	2 cut(s)	67, 250
BstV1I	GCAGC	3 cut(s)	522, 663, 858
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
Bsu15I	ATCGAT	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	324
BsuTUI	ATCGAT	1 cut(s)	19
BtgI	CCRYGG	2 cut(s)	472, 658
BtsCI	GGATG	1 cut(s)	895
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	325, 410, 578
Cac8I	GCNNGC	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	245, 278
Cfr9I	CCCGGG	1 cut(s)	258
ClaI	ATCGAT	1 cut(s)	19
CseI	GACGC	1 cut(s)	903
Csp6I	GTAC	2 cut(s)	110, 817
CviAII	CATG	1 cut(s)	124
CviQI	GTAC	2 cut(s)	110, 817
DdeI	CTNAG	4 cut(s)	190, 581, 695, 715
DpnI	GATC	8 cut(s)	18, 78, 159, 457, 523, 529, 564, 577
DpnII	GATC	8 cut(s)	16, 76, 157, 455, 521, 527, 562, 575
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	268, 593
EarI	CTCTTC	2 cut(s)	268, 593
EciI	GGCGGA	1 cut(s)	454
Eco130I	CCWWGG	2 cut(s)	420, 857
Eco24I	GRGCYC	4 cut(s)	334, 587, 827, 875
Eco47I	GGWCC	2 cut(s)	245, 278
Eco72I	CACGTG	1 cut(s)	74
Eco88I	CYCGRG	4 cut(s)	162, 258, 778, 820
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRII	CCWGG	5 cut(s)	286, 451, 558, 728, 787
EcoT14I	CCWWGG	2 cut(s)	420, 857
EcoT38I	GRGCYC	4 cut(s)	334, 587, 827, 875
ErhI	CCWWGG	2 cut(s)	420, 857
FaeI	CATG	1 cut(s)	127
FaqI	GGGAC	5 cut(s)	258, 365, 402, 711, 875
FatI	CATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	691
Fnu4HI	GCNGC	4 cut(s)	508, 511, 652, 847
FokI	GGATG	1 cut(s)	902
FriOI	GRGCYC	4 cut(s)	334, 587, 827, 875
Fsp4HI	GCNGC	4 cut(s)	508, 511, 652, 847
FspBI	CTAG	2 cut(s)	804, 910
GluI	GCNGC	4 cut(s)	508, 511, 652, 847
GsaI	CCCAGC	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	259
HgaI	GACGC	1 cut(s)	903
Hin1II	CATG	1 cut(s)	127
HinfI	GANTC	3 cut(s)	442, 601, 693
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	2 cut(s)	441, 897
Hpy166II	GTNNAC	5 cut(s)	71, 121, 449, 605, 692
Hpy188I	TCNGA	1 cut(s)	718
Hpy188III	TCNNGA	5 cut(s)	80, 164, 200, 335, 525
Hpy8I	GTNNAC	5 cut(s)	71, 121, 449, 605, 692
HpyAV	CCTTC	3 cut(s)	641, 684, 786
HpyCH4III	ACNGT	1 cut(s)	725
HpyCH4IV	ACGT	2 cut(s)	73, 460
HpyCH4V	TGCA	3 cut(s)	236, 342, 408
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 93, 102, 176, 507, 783
HpyF3I	CTNAG	4 cut(s)	190, 581, 695, 715
HpySE526I	ACGT	2 cut(s)	73, 460
Hsp92II	CATG	1 cut(s)	127
Kzo9I	GATC	8 cut(s)	16, 76, 157, 455, 521, 527, 562, 575
LmnI	GCTCC	1 cut(s)	870
Lsp1109I	GCAGC	3 cut(s)	522, 663, 858
LweI	GCATC	2 cut(s)	157, 166
MaeI	CTAG	2 cut(s)	804, 910
MaeII	ACGT	2 cut(s)	73, 460
MaeIII	GTNAC	2 cut(s)	494, 903
MalI	GATC	8 cut(s)	18, 78, 159, 457, 523, 529, 564, 577
MboI	GATC	8 cut(s)	16, 76, 157, 455, 521, 527, 562, 575
MboII	GAAGA	3 cut(s)	285, 370, 610
MflI	RGATCY	1 cut(s)	527
MhlI	GDGCHC	4 cut(s)	334, 587, 827, 875
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	3 cut(s)	149, 230, 307
MluI	ACGCGT	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	3 cut(s)	451, 610, 687
Mox20I	TGGCCA	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	2 cut(s)	306, 428
Msp20I	TGGCCA	1 cut(s)	324
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	7 cut(s)	259, 260, 288, 453, 560, 730, 789
MvaI	CCWGG	5 cut(s)	288, 453, 560, 730, 789
MvnI	CGCG	2 cut(s)	67, 250
MwoI	GCNNNNNNNGC	6 cut(s)	33, 93, 102, 176, 507, 783
NciI	CCSGG	2 cut(s)	259, 260
NdeII	GATC	8 cut(s)	16, 76, 157, 455, 521, 527, 562, 575
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	3 cut(s)	246, 256, 872
NmuCI	GTSAC	1 cut(s)	903
PaeR7I	CTCGAG	1 cut(s)	162
PasI	CCCWGGG	1 cut(s)	729
PflFI	GACNNNGTC	1 cut(s)	897
PkrI	GCNGC	4 cut(s)	509, 512, 653, 848
PleI	GAGTC	3 cut(s)	450, 609, 687
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
PpsI	GAGTC	3 cut(s)	450, 609, 687
Ppu21I	YACGTR	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	5 cut(s)	286, 451, 558, 728, 787
PspCI	CACGTG	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	5 cut(s)	286, 451, 558, 728, 787
PspN4I	GGNNCC	3 cut(s)	246, 256, 872
PspPI	GGNCC	2 cut(s)	245, 278
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	527
PsyI	GACNNNGTC	1 cut(s)	897
RsaI	GTAC	2 cut(s)	111, 818
RsaNI	GTAC	2 cut(s)	110, 817
SaqAI	TTAA	2 cut(s)	306, 428
SatI	GCNGC	4 cut(s)	508, 511, 652, 847
Sau3AI	GATC	8 cut(s)	16, 76, 157, 455, 521, 527, 562, 575
Sau96I	GGNCC	2 cut(s)	245, 278
SchI	GAGTC	3 cut(s)	451, 610, 687
ScrFI	CCNGG	7 cut(s)	259, 260, 288, 453, 560, 730, 789
SduI	GDGCHC	4 cut(s)	334, 587, 827, 875
SetI	ASST	9 cut(s)	76, 191, 280, 391, 454, 463, 515, 643, 670
SfaNI	GCATC	2 cut(s)	157, 166
SfcI	CTRYAG	1 cut(s)	514
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	245, 278
SlaI	CTCGAG	1 cut(s)	162
SmaI	CCCGGG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	149, 230, 307
SsiI	CCGC	4 cut(s)	248, 439, 508, 608
SspMI	CTAG	2 cut(s)	804, 910
StyD4I	CCNGG	7 cut(s)	257, 258, 286, 451, 558, 728, 787
StyI	CCWWGG	2 cut(s)	420, 857
TaaI	ACNGT	1 cut(s)	725
TaiI	ACGT	2 cut(s)	76, 463
TaqI	TCGA	3 cut(s)	19, 163, 520
TasI	AATT	3 cut(s)	149, 230, 307
TauI	GCSGC	1 cut(s)	510
Tru1I	TTAA	2 cut(s)	306, 428
Tru9I	TTAA	2 cut(s)	306, 428
TscAI	CASTG	3 cut(s)	332, 410, 585
TseFI	GTSAC	1 cut(s)	903
TseI	GCWGC	3 cut(s)	510, 651, 846
Tsp45I	GTSAC	1 cut(s)	903
TspDTI	ATGAA	2 cut(s)	140, 660
TspGWI	ACGGA	1 cut(s)	891
TspMI	CCCGGG	1 cut(s)	258
TspRI	CASTG	3 cut(s)	332, 410, 585
Tth111I	GACNNNGTC	1 cut(s)	897
VpaK11BI	GGWCC	2 cut(s)	245, 278
XagI	CCTNNNNNAGG	1 cut(s)	645
XapI	RAATTY	2 cut(s)	149, 230
XhoI	CTCGAG	1 cut(s)	162
XmaI	CCCGGG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	691
XspI	CTAG	2 cut(s)	804, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.