FvH4_6g14771

serine arginine-rich splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005963
Physical Location & Seq
Forward (+)
9177162 .. 9179815
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14771.t1

Sequence Viewer

Length: 858 bp
ATGCCTCGCTACGATGATCGATATGGGAATTCGCGTCTTTATGTTGGTCGCTTGGCTTCACGCACCCGGACGCGTGATCTGGACCGGATTTTCAGCAGATACGGGAGAGTACGAGATGTGGACATGAAGCGCGAGTTTGCATTTGTTGAATTTTATGATCCGCGAGATGCTGATGATGCAAGATATAGCTTAGATGGTAGGGAAGTTGATGGTAGTCGTCTGATTGTGGAGTTTGCTAAGGGGGCTCCACGTGGTTCCCGGGAATACATGGGCAGAGGTCCACCACCTGGATCTGGGCGCTGCTTTAATTGTGGTATTGATGGCCACTGGGCTCGTGATTGTAAGGCTGGTGATTGGAAGAATAAATGTTATCGCTGTGGAGAAAGAGGCCATATTGAGAGGCAGTGCAAAAATAGCCCAAAAGAATTAAGGCGTGAGCGGAGTCGTTCACGTTCTCCTCGCCGCGGTAGAAGTCGTAGCCCAAGTTACAGCCGTAGCTACAGCCGATCAAGGTCCCCACCAAGGAGAGAACGAAGCTTGGAAAGGGATTATAGATCTCGGAGCCCTTCTTATAGAAGCCGTGATCTGAGCATGAGTCCAGTGCCCTCAAAGGGGAGGCAGCGCAGCCTTACACCCGAGGATGATAGCCCTCGTGGAAGGGGTAGCCTTTCTCCTAGAAATGGCAGCTTAGGCCCCAGAGATGGTAGCAAAAGCCCAACCCCTAAGAGCAGAAGTCCTAGCCCTGACCGTGAGATTGATAGCCCTGTTCGCCCTTCTGCTAATGGTCGTAACCCCAGCCCGAGGGAGGATATGAGCCCTGTTGATGAGGACGACGATTACAACCGCCGCTCCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034622 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 zf-CCHC

Protein Analysis

286

Amino Acids

32.83

Weight (kDa)

10.43

Isoelectric Point (pI)

90.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 13 - 74 2.4e-13 RNA recognition motif
zf-CCHC PF00098 100 - 115 2.7e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 287
AccBSI CCGCTC 2 cut(s) 439, 849
AccII CGCG 5 cut(s) 34, 73, 132, 163, 465
AciI CCGC 6 cut(s) 161, 439, 463, 465, 844, 847
AclWI GGATC 2 cut(s) 152, 298
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 2 cut(s) 28, 149
AcvI CACGTG 1 cut(s) 251
AfaI GTAC 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 4 cut(s) 189, 498, 537, 687
AluI AGCT 4 cut(s) 189, 498, 537, 687
AlwI GGATC 2 cut(s) 152, 298
Ama87I CYCGRG 3 cut(s) 258, 635, 799
AoxI GGCC 3 cut(s) 322, 388, 691
ApeKI GCWGC 4 cut(s) 300, 619, 624, 684
ApoI RAATTY 2 cut(s) 28, 149
AspLEI GCGC 3 cut(s) 132, 300, 624
AspS9I GGNCC 4 cut(s) 82, 278, 513, 692
AsuC2I CCSGG 3 cut(s) 67, 259, 260
AsuHPI GGTGA 1 cut(s) 362
AvaI CYCGRG 3 cut(s) 258, 635, 799
AvaII GGWCC 3 cut(s) 82, 278, 513
BaeGI GKGCMC 1 cut(s) 606
BalI TGGCCA 1 cut(s) 324
BanII GRGCYC 4 cut(s) 247, 334, 566, 818
BauI CACGAG 2 cut(s) 333, 651
BbrPI CACGTG 1 cut(s) 251
BbvI GCAGC 4 cut(s) 287, 631, 636, 696
BccI CCATC 4 cut(s) 188, 203, 314, 695
BceAI ACGGC 2 cut(s) 477, 564
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 3 cut(s) 67, 259, 260
BfaI CTAG 2 cut(s) 675, 738
BfmI CTRYAG 1 cut(s) 499
BfoI RGCGCY 1 cut(s) 301
BglII AGATCT 1 cut(s) 554
BisI GCNGC 6 cut(s) 301, 463, 620, 625, 685, 847
BlsI GCNGC 6 cut(s) 302, 464, 621, 626, 686, 848
Bme1390I CCNGG 4 cut(s) 67, 259, 260, 288
Bme18I GGWCC 3 cut(s) 82, 278, 513
BmeT110I CYCGRG 3 cut(s) 258, 635, 799
BmgT120I GGNCC 4 cut(s) 82, 278, 513, 692
BmiI GGNNCC 5 cut(s) 246, 256, 515, 563, 694
BmrFI CCNGG 4 cut(s) 67, 259, 260, 288
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 2 cut(s) 157, 166
BmuI ACTGGG 1 cut(s) 337
Bpu10I CCTNAGC 2 cut(s) 237, 688
BpuMI CCSGG 3 cut(s) 67, 259, 260
Bsa29I ATCGAT 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 251
BsaJI CCNNGG 5 cut(s) 258, 463, 521, 636, 800
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 1 cut(s) 833
Bse1I ACTGG 2 cut(s) 332, 599
BseBI CCWGG 1 cut(s) 288
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 5 cut(s) 258, 463, 521, 636, 800
BseGI GGATG 1 cut(s) 646
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 2 cut(s) 332, 599
BseRI GAGGAG 1 cut(s) 447
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 4 cut(s) 287, 631, 636, 696
BseYI CCCAGC 1 cut(s) 794
Bsh1236I CGCG 5 cut(s) 34, 73, 132, 163, 465
BshFI GGCC 3 cut(s) 324, 390, 693
BshVI ATCGAT 1 cut(s) 19
BsiHKCI CYCGRG 3 cut(s) 258, 635, 799
BsiSI CCGG 3 cut(s) 67, 85, 259
BslFI GGGAC 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 3 cut(s) 324, 390, 693
BsoBI CYCGRG 3 cut(s) 258, 635, 799
Bsp1286I GDGCHC 5 cut(s) 247, 334, 566, 606, 818
Bsp143I GATC 7 cut(s) 16, 76, 157, 290, 506, 554, 583
BspACI CCGC 6 cut(s) 161, 439, 463, 465, 844, 847
BspANI GGCC 3 cut(s) 324, 390, 693
BspCNI CTCAG 1 cut(s) 579
BspDI ATCGAT 1 cut(s) 19
BspFNI CGCG 5 cut(s) 34, 73, 132, 163, 465
BspLI GGNNCC 5 cut(s) 246, 256, 515, 563, 694
BspPI GGATC 2 cut(s) 152, 298
BsrBI CCGCTC 2 cut(s) 439, 849
BsrI ACTGG 2 cut(s) 332, 599
BssECI CCNNGG 5 cut(s) 258, 463, 521, 636, 800
BssMI GATC 7 cut(s) 16, 76, 157, 290, 506, 554, 583
BssSI CACGAG 2 cut(s) 333, 651
BssT1I CCWWGG 1 cut(s) 521
Bst2BI CACGAG 2 cut(s) 333, 651
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 749
BstBAI YACGTR 1 cut(s) 251
BstDEI CTNAG 5 cut(s) 190, 237, 587, 688, 723
BstDSI CCRYGG 1 cut(s) 463
BstF5I GGATG 1 cut(s) 646
BstFNI CGCG 5 cut(s) 34, 73, 132, 163, 465
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 3 cut(s) 132, 300, 624
BstKTI GATC 7 cut(s) 19, 79, 160, 293, 509, 557, 586
BstMBI GATC 7 cut(s) 16, 76, 157, 290, 506, 554, 583
BstMWI GCNNNNNNNGC 5 cut(s) 176, 242, 414, 690, 768
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 4 cut(s) 65, 257, 258, 286
BstSFI CTRYAG 1 cut(s) 499
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 5 cut(s) 34, 73, 132, 163, 465
BstV1I GCAGC 4 cut(s) 287, 631, 636, 696
BstX2I RGATCY 2 cut(s) 290, 554
BstYI RGATCY 2 cut(s) 290, 554
Bsu15I ATCGAT 1 cut(s) 19
BsuRI GGCC 3 cut(s) 324, 390, 693
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 463
BtsCI GGATG 1 cut(s) 646
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 3 cut(s) 325, 410, 606
CfoI GCGC 3 cut(s) 132, 300, 624
Cfr13I GGNCC 4 cut(s) 82, 278, 513, 692
Cfr42I CCGCGG 1 cut(s) 466
Cfr9I CCCGGG 1 cut(s) 258
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 2 cut(s) 23, 79
Csp6I GTAC 1 cut(s) 110
CviAII CATG 3 cut(s) 124, 268, 592
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 5 cut(s) 190, 237, 587, 688, 723
DpnI GATC 7 cut(s) 18, 78, 159, 292, 508, 556, 585
DpnII GATC 7 cut(s) 16, 76, 157, 290, 506, 554, 583
EaeI YGGCCR 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 521
Eco24I GRGCYC 4 cut(s) 247, 334, 566, 818
Eco47I GGWCC 3 cut(s) 82, 278, 513
Eco72I CACGTG 1 cut(s) 251
Eco88I CYCGRG 3 cut(s) 258, 635, 799
EcoO109I RGGNCCY 2 cut(s) 513, 692
EcoRI GAATTC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 521
EcoT38I GRGCYC 4 cut(s) 247, 334, 566, 818
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 3 cut(s) 127, 271, 595
FaqI GGGAC 1 cut(s) 499
FatI CATG 3 cut(s) 123, 267, 591
Fnu4HI GCNGC 6 cut(s) 301, 463, 620, 625, 685, 847
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 4 cut(s) 247, 334, 566, 818
Fsp4HI GCNGC 6 cut(s) 301, 463, 620, 625, 685, 847
FspBI CTAG 2 cut(s) 675, 738
GlaI GCGC 3 cut(s) 131, 299, 623
GluI GCNGC 6 cut(s) 301, 463, 620, 625, 685, 847
GsaI CCCAGC 1 cut(s) 798
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 3 cut(s) 324, 390, 693
HapII CCGG 3 cut(s) 67, 85, 259
HgaI GACGC 2 cut(s) 23, 79
HhaI GCGC 3 cut(s) 132, 300, 624
Hin1II CATG 3 cut(s) 127, 271, 595
Hin6I GCGC 3 cut(s) 130, 298, 622
HinP1I GCGC 3 cut(s) 130, 298, 622
HindIII AAGCTT 1 cut(s) 535
HinfI GANTC 2 cut(s) 442, 595
HpaII CCGG 3 cut(s) 67, 85, 259
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 3 cut(s) 121, 281, 449
Hpy188I TCNGA 3 cut(s) 222, 561, 588
Hpy188III TCNNGA 2 cut(s) 80, 335
Hpy8I GTNNAC 3 cut(s) 121, 281, 449
Hpy99I CGWCG 1 cut(s) 836
HpyAV CCTTC 3 cut(s) 576, 651, 783
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4IV ACGT 2 cut(s) 250, 451
HpyCH4V TGCA 3 cut(s) 140, 179, 408
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 242, 414, 690, 768
HpyF3I CTNAG 5 cut(s) 190, 237, 587, 688, 723
HpySE526I ACGT 2 cut(s) 250, 451
Hsp92II CATG 3 cut(s) 127, 271, 595
HspAI GCGC 3 cut(s) 130, 298, 622
KspI CCGCGG 1 cut(s) 466
Kzo9I GATC 7 cut(s) 16, 76, 157, 290, 506, 554, 583
LmnI GCTCC 3 cut(s) 250, 561, 854
Lsp1109I GCAGC 4 cut(s) 287, 631, 636, 696
LweI GCATC 2 cut(s) 157, 166
MaeI CTAG 2 cut(s) 675, 738
MaeII ACGT 2 cut(s) 250, 451
MaeIII GTNAC 2 cut(s) 485, 788
MalI GATC 7 cut(s) 18, 78, 159, 292, 508, 556, 585
MbiI CCGCTC 2 cut(s) 439, 849
MboI GATC 7 cut(s) 16, 76, 157, 290, 506, 554, 583
MboII GAAGA 1 cut(s) 370
MflI RGATCY 2 cut(s) 290, 554
MhlI GDGCHC 5 cut(s) 247, 334, 566, 606, 818
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 4 cut(s) 28, 149, 307, 425
MluI ACGCGT 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 2 cut(s) 451, 604
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
MseI TTAA 2 cut(s) 306, 428
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 465
MspI CCGG 3 cut(s) 67, 85, 259
MspR9I CCNGG 4 cut(s) 67, 259, 260, 288
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 5 cut(s) 34, 73, 132, 163, 465
MwoI GCNNNNNNNGC 5 cut(s) 176, 242, 414, 690, 768
NciI CCSGG 3 cut(s) 67, 259, 260
NdeII GATC 7 cut(s) 16, 76, 157, 290, 506, 554, 583
NlaIII CATG 3 cut(s) 127, 271, 595
NlaIV GGNNCC 5 cut(s) 246, 256, 515, 563, 694
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 6 cut(s) 302, 464, 621, 626, 686, 848
PleI GAGTC 2 cut(s) 450, 603
PmaCI CACGTG 1 cut(s) 251
PmlI CACGTG 1 cut(s) 251
PpsI GAGTC 2 cut(s) 450, 603
Ppu21I YACGTR 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 286
PspCI CACGTG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 794
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 5 cut(s) 246, 256, 515, 563, 694
PspPI GGNCC 4 cut(s) 82, 278, 513, 692
PspPPI RGGWCCY 1 cut(s) 513
PsuI RGATCY 2 cut(s) 290, 554
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SacII CCGCGG 1 cut(s) 466
SaqAI TTAA 2 cut(s) 306, 428
SatI GCNGC 6 cut(s) 301, 463, 620, 625, 685, 847
Sau3AI GATC 7 cut(s) 16, 76, 157, 290, 506, 554, 583
Sau96I GGNCC 4 cut(s) 82, 278, 513, 692
SchI GAGTC 2 cut(s) 451, 604
ScrFI CCNGG 4 cut(s) 67, 259, 260, 288
SduI GDGCHC 5 cut(s) 247, 334, 566, 606, 818
SetI ASST 9 cut(s) 191, 253, 280, 289, 454, 500, 515, 539, 689
SfaNI GCATC 2 cut(s) 157, 166
SfcI CTRYAG 1 cut(s) 499
Sfr303I CCGCGG 1 cut(s) 466
SgrBI CCGCGG 1 cut(s) 466
SinI GGWCC 3 cut(s) 82, 278, 513
SmaI CCCGGG 1 cut(s) 260
Sse9I AATT 4 cut(s) 28, 149, 307, 425
SsiI CCGC 6 cut(s) 161, 439, 463, 465, 844, 847
SspMI CTAG 2 cut(s) 675, 738
StyD4I CCNGG 4 cut(s) 65, 257, 258, 286
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 1 cut(s) 749
TaiI ACGT 2 cut(s) 253, 454
TaqI TCGA 1 cut(s) 19
TasI AATT 4 cut(s) 28, 149, 307, 425
TauI GCSGC 2 cut(s) 465, 849
Tru1I TTAA 2 cut(s) 306, 428
Tru9I TTAA 2 cut(s) 306, 428
TscAI CASTG 3 cut(s) 332, 410, 606
TseI GCWGC 4 cut(s) 300, 619, 624, 684
TspDTI ATGAA 1 cut(s) 140
TspMI CCCGGG 1 cut(s) 258
TspRI CASTG 3 cut(s) 332, 410, 606
Van91I CCANNNNNTGG 1 cut(s) 287
VpaK11BI GGWCC 3 cut(s) 82, 278, 513
XapI RAATTY 2 cut(s) 28, 149
XmaI CCCGGG 1 cut(s) 258
XspI CTAG 2 cut(s) 675, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.