Rh3DG161700

serine arginine-rich splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005963
Physical Location & Seq
Forward (+)
14063820 .. 14066565
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG161700.1

Sequence Viewer

Length: 768 bp
ATGATAGCCTTACTGTTTCTGGTTTCTGGCAACCGTTTACGCAGAGTACGAGATGTGGACATGAAGCGAGAGTTTGCATTTGTTGAATTTTATGATCCGCGAGATGCTGATGATGCAAGATATAGCTTAGATGGTAGGGAAGTTGATGGTAGTCGTCTGATTGTGGAGTTCGCTAAGGGGGCTCCACGTGGTTCCCGGGAATACATGGGCAGAGGTCCTCCACCTGGATCTGGGCGCTGCTTTAATTGTGGCATTGATGGCCACTGGGCTCGTGATTGTAAGGCTGGGGATTGGAAGAATAAATGCTATCGCTGTGGAGAAAGAGGCCATATAGAAAGGCAGTGCAAAAATAGCCCAAAAGAACTAAGGCGTGAGCGGAGTCGTTCACGGTCTCCTCGCCGCAGAAGTCGTAGCCCAAGTTACAGCCGAAGCTACAGCCGATCAAGGTCCCCGGTCAGGAGAGGACGGAGCTTGGAAAGGGATGATAGATCTCGGAGCCCTTCTTACAGGAGCCGTGATGTGAGCATGAGTCCATTGCCCAGGAAGCGAAGCCTTACACCTGAGGATTATAGCCCCCGTGGAAGGGGTAGCCCTTCTCCCAGAAATGGTAGCAAAAGCCCTAGCCCTAAGAGCAGAAGTCCGATTAGCCCTGACCGCGAGATTGATAGCCCTGTTCGCCCTTCTGAAGCTAATGGTCGTAGCCCCAGTCCAAGGGAGGATAGGAGCCCTGTCGATGAGGATGATTATGACAACCGCCGCTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034622 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 zf-CCHC

Protein Analysis

255

Amino Acids

29.28

Weight (kDa)

10.52

Isoelectric Point (pI)

110.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 19 - 53 1e-05 RNA recognition motif
zf-CCHC PF00098 79 - 94 2.3e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 376, 759
AccII CGCG 2 cut(s) 100, 657
AciI CCGC 6 cut(s) 98, 376, 400, 655, 754, 757
AclWI GGATC 2 cut(s) 89, 235
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 705
AcvI CACGTG 1 cut(s) 188
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 7 cut(s) 224, 230, 456, 582, 583, 605, 711
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 2 cut(s) 223, 539
AluBI AGCT 4 cut(s) 126, 432, 471, 689
AluI AGCT 4 cut(s) 126, 432, 471, 689
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 2 cut(s) 89, 235
Ama87I CYCGRG 1 cut(s) 195
AoxI GGCC 2 cut(s) 259, 325
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 215, 447
AsuC2I CCSGG 3 cut(s) 196, 197, 452
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 2 cut(s) 215, 447
AxyI CCTNAGG 1 cut(s) 561
BalI TGGCCA 1 cut(s) 261
BanII GRGCYC 4 cut(s) 184, 271, 500, 728
BauI CACGAG 1 cut(s) 270
BbrPI CACGTG 1 cut(s) 188
BbvI GCAGC 1 cut(s) 224
BccI CCATC 3 cut(s) 125, 140, 251
BceAI ACGGC 1 cut(s) 498
BciT130I CCWGG 2 cut(s) 225, 541
BcnI CCSGG 3 cut(s) 196, 197, 452
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 1 cut(s) 433
BfoI RGCGCY 1 cut(s) 238
BglII AGATCT 1 cut(s) 488
BisI GCNGC 3 cut(s) 238, 400, 757
BlsI GCNGC 3 cut(s) 239, 401, 758
Bme1390I CCNGG 5 cut(s) 196, 197, 225, 452, 541
Bme18I GGWCC 2 cut(s) 215, 447
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 215, 447
BmiI GGNNCC 6 cut(s) 183, 193, 449, 497, 512, 725
BmrFI CCNGG 5 cut(s) 196, 197, 225, 452, 541
BmrI ACTGGG 2 cut(s) 274, 699
BmsI GCATC 2 cut(s) 94, 103
BmuI ACTGGG 2 cut(s) 274, 699
Bpu10I CCTNAGC 1 cut(s) 174
BpuMI CCSGG 3 cut(s) 196, 197, 452
BsaAI YACGTR 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 5 cut(s) 195, 450, 539, 577, 710
Bsc4I CCNNNNNNNGG 7 cut(s) 224, 230, 456, 582, 583, 605, 711
Bse1I ACTGG 2 cut(s) 269, 705
Bse21I CCTNAGG 1 cut(s) 561
Bse3DI GCAATG 1 cut(s) 533
BseBI CCWGG 2 cut(s) 225, 541
BseDI CCNNGG 5 cut(s) 195, 450, 539, 577, 710
BseGI GGATG 2 cut(s) 487, 745
BseLI CCNNNNNNNGG 7 cut(s) 224, 230, 456, 582, 583, 605, 711
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 2 cut(s) 269, 705
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 284
Bsh1236I CGCG 2 cut(s) 100, 657
BshFI GGCC 2 cut(s) 261, 327
BsiHKCI CYCGRG 1 cut(s) 195
BsiSI CCGG 2 cut(s) 196, 452
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 7 cut(s) 224, 230, 456, 582, 583, 605, 711
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 2 cut(s) 261, 327
Bso31I GGTCTC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 195
Bsp1286I GDGCHC 4 cut(s) 184, 271, 500, 728
Bsp143I GATC 4 cut(s) 94, 227, 440, 488
BspACI CCGC 6 cut(s) 98, 376, 400, 655, 754, 757
BspANI GGCC 2 cut(s) 261, 327
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 2 cut(s) 100, 657
BspLI GGNNCC 6 cut(s) 183, 193, 449, 497, 512, 725
BspPI GGATC 2 cut(s) 89, 235
BspTNI GGTCTC 1 cut(s) 396
BsrBI CCGCTC 2 cut(s) 376, 759
BsrDI GCAATG 1 cut(s) 533
BsrI ACTGG 2 cut(s) 269, 705
BssECI CCNNGG 5 cut(s) 195, 450, 539, 577, 710
BssMI GATC 4 cut(s) 94, 227, 440, 488
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 710
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 225, 541
Bst4CI ACNGT 3 cut(s) 15, 35, 390
BstBAI YACGTR 1 cut(s) 188
BstDEI CTNAG 5 cut(s) 127, 174, 365, 561, 627
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 2 cut(s) 487, 745
BstFNI CGCG 2 cut(s) 100, 657
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 4 cut(s) 97, 230, 443, 491
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 4 cut(s) 94, 227, 440, 488
BstMWI GCNNNNNNNGC 8 cut(s) 113, 179, 258, 351, 544, 630, 654, 675
BstNI CCWGG 2 cut(s) 225, 541
BstSCI CCNGG 5 cut(s) 194, 195, 223, 450, 539
BstSFI CTRYAG 1 cut(s) 433
BstUI CGCG 2 cut(s) 100, 657
BstV1I GCAGC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 227, 488
BstYI RGATCY 2 cut(s) 227, 488
Bsu36I CCTNAGG 1 cut(s) 561
BsuRI GGCC 2 cut(s) 261, 327
BtgI CCRYGG 1 cut(s) 577
BtsCI GGATG 2 cut(s) 487, 745
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 2 cut(s) 262, 347
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 215, 447
Cfr9I CCCGGG 1 cut(s) 195
Csp6I GTAC 1 cut(s) 47
CviAII CATG 3 cut(s) 61, 205, 526
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 5 cut(s) 127, 174, 365, 561, 627
DpnI GATC 4 cut(s) 96, 229, 442, 490
DpnII GATC 4 cut(s) 94, 227, 440, 488
EaeI YGGCCR 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 710
Eco24I GRGCYC 4 cut(s) 184, 271, 500, 728
Eco31I GGTCTC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 215, 447
Eco57I CTGAAG 1 cut(s) 705
Eco72I CACGTG 1 cut(s) 188
Eco81I CCTNAGG 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 195
EcoO109I RGGNCCY 2 cut(s) 215, 447
EcoRII CCWGG 2 cut(s) 223, 539
EcoT14I CCWWGG 1 cut(s) 710
EcoT38I GRGCYC 4 cut(s) 184, 271, 500, 728
ErhI CCWWGG 1 cut(s) 710
FaeI CATG 3 cut(s) 64, 208, 529
FaiI YATR 9 cut(s) 62, 93, 123, 206, 330, 332, 527, 570, 747
FaqI GGGAC 1 cut(s) 433
FatI CATG 3 cut(s) 60, 204, 525
Fnu4HI GCNGC 3 cut(s) 238, 400, 757
FokI GGATG 2 cut(s) 494, 752
FriOI GRGCYC 4 cut(s) 184, 271, 500, 728
Fsp4HI GCNGC 3 cut(s) 238, 400, 757
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 236
GluI GCNGC 3 cut(s) 238, 400, 757
GsaI CCCAGC 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 261, 327
HapII CCGG 2 cut(s) 196, 452
HhaI GCGC 1 cut(s) 237
Hin1II CATG 3 cut(s) 64, 208, 529
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HinfI GANTC 2 cut(s) 379, 529
HpaII CCGG 2 cut(s) 196, 452
Hpy166II GTNNAC 3 cut(s) 38, 58, 386
Hpy188I TCNGA 4 cut(s) 159, 495, 642, 685
Hpy188III TCNNGA 2 cut(s) 272, 457
Hpy8I GTNNAC 3 cut(s) 38, 58, 386
HpyAV CCTTC 4 cut(s) 510, 576, 603, 690
HpyCH4III ACNGT 3 cut(s) 15, 35, 390
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 77, 116, 345
HpyF10VI GCNNNNNNNGC 8 cut(s) 113, 179, 258, 351, 544, 630, 654, 675
HpyF3I CTNAG 5 cut(s) 127, 174, 365, 561, 627
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 3 cut(s) 64, 208, 529
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 4 cut(s) 94, 227, 440, 488
LmnI GCTCC 5 cut(s) 187, 468, 495, 510, 723
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 2 cut(s) 94, 103
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 419
MalI GATC 4 cut(s) 96, 229, 442, 490
MbiI CCGCTC 2 cut(s) 376, 759
MboI GATC 4 cut(s) 94, 227, 440, 488
MboII GAAGA 1 cut(s) 307
MflI RGATCY 2 cut(s) 227, 488
MhlI GDGCHC 4 cut(s) 184, 271, 500, 728
MlsI TGGCCA 1 cut(s) 261
MluCI AATT 2 cut(s) 86, 244
MluNI TGGCCA 1 cut(s) 261
MlyI GAGTC 2 cut(s) 388, 538
MnlI CCTC 8 cut(s) 206, 228, 317, 405, 455, 556, 709, 730
Mox20I TGGCCA 1 cut(s) 261
MscI TGGCCA 1 cut(s) 261
MseI TTAA 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 261
MspI CCGG 2 cut(s) 196, 452
MspR9I CCNGG 5 cut(s) 196, 197, 225, 452, 541
MvaI CCWGG 2 cut(s) 225, 541
MvnI CGCG 2 cut(s) 100, 657
MwoI GCNNNNNNNGC 8 cut(s) 113, 179, 258, 351, 544, 630, 654, 675
NciI CCSGG 3 cut(s) 196, 197, 452
NdeII GATC 4 cut(s) 94, 227, 440, 488
NlaIII CATG 3 cut(s) 64, 208, 529
NlaIV GGNNCC 6 cut(s) 183, 193, 449, 497, 512, 725
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PkrI GCNGC 3 cut(s) 239, 401, 758
PleI GAGTC 2 cut(s) 387, 537
PmaCI CACGTG 1 cut(s) 188
PmlI CACGTG 1 cut(s) 188
PpsI GAGTC 2 cut(s) 387, 537
Ppu21I YACGTR 1 cut(s) 188
PpuMI RGGWCCY 2 cut(s) 215, 447
Psp5II RGGWCCY 2 cut(s) 215, 447
Psp6I CCWGG 2 cut(s) 223, 539
PspCI CACGTG 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 2 cut(s) 223, 539
PspN4I GGNNCC 6 cut(s) 183, 193, 449, 497, 512, 725
PspPI GGNCC 2 cut(s) 215, 447
PspPPI RGGWCCY 2 cut(s) 215, 447
PsuI RGATCY 2 cut(s) 227, 488
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 3 cut(s) 238, 400, 757
Sau3AI GATC 4 cut(s) 94, 227, 440, 488
Sau96I GGNCC 2 cut(s) 215, 447
SchI GAGTC 2 cut(s) 388, 538
ScrFI CCNGG 5 cut(s) 196, 197, 225, 452, 541
SduI GDGCHC 4 cut(s) 184, 271, 500, 728
SetI ASST 9 cut(s) 128, 190, 217, 226, 434, 449, 473, 562, 691
SfaNI GCATC 2 cut(s) 94, 103
SfcI CTRYAG 1 cut(s) 433
SinI GGWCC 2 cut(s) 215, 447
SmaI CCCGGG 1 cut(s) 197
Sse9I AATT 2 cut(s) 86, 244
SsiI CCGC 6 cut(s) 98, 376, 400, 655, 754, 757
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 5 cut(s) 194, 195, 223, 450, 539
StyI CCWWGG 1 cut(s) 710
TaaI ACNGT 3 cut(s) 15, 35, 390
TaiI ACGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 732
TasI AATT 2 cut(s) 86, 244
TauI GCSGC 2 cut(s) 402, 759
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 269, 347
TseI GCWGC 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 481
TspMI CCCGGG 1 cut(s) 195
TspRI CASTG 2 cut(s) 269, 347
VpaK11BI GGWCC 2 cut(s) 215, 447
XapI RAATTY 1 cut(s) 86
XmaI CCCGGG 1 cut(s) 195
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.