Rroxscaffold_6G00413220

serine arginine-rich splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005963
Physical Location & Seq
Reverse (-)
35627701 .. 35630316
2616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413220.1

Sequence Viewer

Length: 711 bp
ATGAAGCGAGAGTTTGCATTTGTTGAATTTTATGATCCGCGAGATGCTGATGATGCAAGATATAGCTTAGATGGTAGGGAAGTTGATGGTAGTCGTCTGATTGTTGAGTTCGCTAAGGGGGCTCCACGTGGTTCCCGGGAATACATGGGCAGAGGTCCTCCACCTGGATCTGGGCGCTGCTTTAATTGTGGCATTGATGGCCACTGGGCTCGTGATTGTAAGGCTGGGGATTGGAAGAATAAATGCTATCGCTGTGGAGAAAGAGGCCATATAGAAAGGCAGTGCAAAAATAGCCCAAAAGAACTAAGGCGTGAGCGGAGTCGTTCACGTTCTCCTCGCCGCGGCAGAAGTCGTAGCCCAAGTTACAGCCGAAGCTACAGCCGATCAAGGTCCCCGGTCAGGAGAGGACGGAGCTTGGAAAGGGATGACAGATCTCGGAGCCCTTCTTACAGAAGCCGTGATGTGAGCATGAGTCCATTGCCCAGGAAGCGAAGCCTTACACCTGAGGATTATAGCCCCCGTGGGAGGGGTAGCCCTTCTCCCAGAAATGATAGCAAAAGCCCTAGCCCTAAGAGCAGAAGTCCTATTAGCCCTGACCGCGAGATTGATAGCCCTGTTCGCCCTTCTGAAGCTAATGGTCGTAGCCCCAGTCCAAGGGAGGATAGGAGCCCTGTTGATGAGGATGATTATGACAACCGCCGCTCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034622 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 zf-CCHC

Protein Analysis

236

Amino Acids

27.07

Weight (kDa)

10.28

Isoelectric Point (pI)

115.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 59 - 74 2.1e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 316, 702
AccII CGCG 3 cut(s) 40, 342, 600
AciI CCGC 7 cut(s) 38, 316, 340, 342, 598, 697, 700
AclWI GGATC 2 cut(s) 29, 175
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 648
AcvI CACGTG 1 cut(s) 128
AfiI CCNNNNNNNGG 7 cut(s) 164, 170, 341, 399, 525, 526, 654
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 2 cut(s) 163, 482
AluBI AGCT 4 cut(s) 66, 375, 414, 632
AluI AGCT 4 cut(s) 66, 375, 414, 632
AlwI GGATC 2 cut(s) 29, 175
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 2 cut(s) 199, 265
ApeKI GCWGC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 26
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 155, 390
AsuC2I CCSGG 3 cut(s) 136, 137, 395
AsuHPI GGTGA 1 cut(s) 696
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 2 cut(s) 155, 390
AxyI CCTNAGG 1 cut(s) 504
BalI TGGCCA 1 cut(s) 201
BanII GRGCYC 4 cut(s) 124, 211, 443, 671
BauI CACGAG 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 128
BbvI GCAGC 1 cut(s) 164
BccI CCATC 3 cut(s) 65, 80, 191
BceAI ACGGC 1 cut(s) 441
BciT130I CCWGG 2 cut(s) 165, 484
BcnI CCSGG 3 cut(s) 136, 137, 395
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 376
BfoI RGCGCY 1 cut(s) 178
BglII AGATCT 1 cut(s) 431
BisI GCNGC 4 cut(s) 178, 340, 343, 700
BlsI GCNGC 4 cut(s) 179, 341, 344, 701
Bme1390I CCNGG 5 cut(s) 136, 137, 165, 395, 484
Bme18I GGWCC 2 cut(s) 155, 390
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 155, 390
BmiI GGNNCC 5 cut(s) 123, 133, 392, 440, 668
BmrFI CCNGG 5 cut(s) 136, 137, 165, 395, 484
BmrI ACTGGG 2 cut(s) 214, 642
BmsI GCATC 2 cut(s) 34, 43
BmuI ACTGGG 2 cut(s) 214, 642
Bpu10I CCTNAGC 1 cut(s) 114
BpuMI CCSGG 3 cut(s) 136, 137, 395
BsaAI YACGTR 1 cut(s) 128
BsaJI CCNNGG 6 cut(s) 135, 340, 393, 482, 520, 653
Bsc4I CCNNNNNNNGG 7 cut(s) 164, 170, 341, 399, 525, 526, 654
Bse1I ACTGG 2 cut(s) 209, 648
Bse21I CCTNAGG 1 cut(s) 504
Bse3DI GCAATG 1 cut(s) 476
BseBI CCWGG 2 cut(s) 165, 484
BseDI CCNNGG 6 cut(s) 135, 340, 393, 482, 520, 653
BseGI GGATG 2 cut(s) 430, 688
BseLI CCNNNNNNNGG 7 cut(s) 164, 170, 341, 399, 525, 526, 654
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 2 cut(s) 209, 648
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 224
Bsh1236I CGCG 3 cut(s) 40, 342, 600
BshFI GGCC 2 cut(s) 201, 267
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 2 cut(s) 136, 395
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 7 cut(s) 164, 170, 341, 399, 525, 526, 654
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 2 cut(s) 201, 267
BsoBI CYCGRG 1 cut(s) 135
Bsp1286I GDGCHC 4 cut(s) 124, 211, 443, 671
Bsp143I GATC 4 cut(s) 34, 167, 383, 431
BspACI CCGC 7 cut(s) 38, 316, 340, 342, 598, 697, 700
BspANI GGCC 2 cut(s) 201, 267
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 3 cut(s) 40, 342, 600
BspLI GGNNCC 5 cut(s) 123, 133, 392, 440, 668
BspPI GGATC 2 cut(s) 29, 175
BsrBI CCGCTC 2 cut(s) 316, 702
BsrDI GCAATG 1 cut(s) 476
BsrI ACTGG 2 cut(s) 209, 648
BssECI CCNNGG 6 cut(s) 135, 340, 393, 482, 520, 653
BssMI GATC 4 cut(s) 34, 167, 383, 431
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 653
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 165, 484
BstBAI YACGTR 1 cut(s) 128
BstDEI CTNAG 5 cut(s) 67, 114, 305, 504, 570
BstDSI CCRYGG 2 cut(s) 340, 520
BstF5I GGATG 2 cut(s) 430, 688
BstFNI CGCG 3 cut(s) 40, 342, 600
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 4 cut(s) 37, 170, 386, 434
BstMBI GATC 4 cut(s) 34, 167, 383, 431
BstMWI GCNNNNNNNGC 8 cut(s) 53, 119, 198, 291, 487, 573, 597, 618
BstNI CCWGG 2 cut(s) 165, 484
BstSCI CCNGG 5 cut(s) 134, 135, 163, 393, 482
BstSFI CTRYAG 1 cut(s) 376
BstUI CGCG 3 cut(s) 40, 342, 600
BstV1I GCAGC 1 cut(s) 164
BstX2I RGATCY 2 cut(s) 167, 431
BstYI RGATCY 2 cut(s) 167, 431
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 2 cut(s) 201, 267
BtgI CCRYGG 2 cut(s) 340, 520
BtsCI GGATG 2 cut(s) 430, 688
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 202, 287
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 155, 390
Cfr42I CCGCGG 1 cut(s) 343
Cfr9I CCCGGG 1 cut(s) 135
CviAII CATG 2 cut(s) 145, 469
DdeI CTNAG 5 cut(s) 67, 114, 305, 504, 570
DpnI GATC 4 cut(s) 36, 169, 385, 433
DpnII GATC 4 cut(s) 34, 167, 383, 431
EaeI YGGCCR 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 653
Eco24I GRGCYC 4 cut(s) 124, 211, 443, 671
Eco47I GGWCC 2 cut(s) 155, 390
Eco57I CTGAAG 1 cut(s) 648
Eco72I CACGTG 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 135
EcoO109I RGGNCCY 2 cut(s) 155, 390
EcoRII CCWGG 2 cut(s) 163, 482
EcoT14I CCWWGG 1 cut(s) 653
EcoT38I GRGCYC 4 cut(s) 124, 211, 443, 671
ErhI CCWWGG 1 cut(s) 653
FaeI CATG 2 cut(s) 148, 472
FaiI YATR 8 cut(s) 33, 63, 146, 270, 272, 470, 513, 690
FaqI GGGAC 1 cut(s) 376
FatI CATG 2 cut(s) 144, 468
Fnu4HI GCNGC 4 cut(s) 178, 340, 343, 700
FokI GGATG 2 cut(s) 437, 695
FriOI GRGCYC 4 cut(s) 124, 211, 443, 671
Fsp4HI GCNGC 4 cut(s) 178, 340, 343, 700
FspBI CTAG 1 cut(s) 564
GlaI GCGC 1 cut(s) 176
GluI GCNGC 4 cut(s) 178, 340, 343, 700
GsaI CCCAGC 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 2 cut(s) 201, 267
HapII CCGG 2 cut(s) 136, 395
HhaI GCGC 1 cut(s) 177
Hin1II CATG 2 cut(s) 148, 472
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 2 cut(s) 319, 472
HpaII CCGG 2 cut(s) 136, 395
HphI GGTGA 1 cut(s) 696
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 3 cut(s) 99, 438, 628
Hpy188III TCNNGA 2 cut(s) 212, 400
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 453, 546, 633
HpyCH4IV ACGT 2 cut(s) 127, 328
HpyCH4V TGCA 3 cut(s) 17, 56, 285
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 119, 198, 291, 487, 573, 597, 618
HpyF3I CTNAG 5 cut(s) 67, 114, 305, 504, 570
HpySE526I ACGT 2 cut(s) 127, 328
Hsp92II CATG 2 cut(s) 148, 472
HspAI GCGC 1 cut(s) 175
KspI CCGCGG 1 cut(s) 343
Kzo9I GATC 4 cut(s) 34, 167, 383, 431
LmnI GCTCC 4 cut(s) 127, 411, 438, 666
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 2 cut(s) 34, 43
MaeI CTAG 1 cut(s) 564
MaeII ACGT 2 cut(s) 127, 328
MaeIII GTNAC 1 cut(s) 362
MalI GATC 4 cut(s) 36, 169, 385, 433
MbiI CCGCTC 2 cut(s) 316, 702
MboI GATC 4 cut(s) 34, 167, 383, 431
MboII GAAGA 1 cut(s) 247
MflI RGATCY 2 cut(s) 167, 431
MhlI GDGCHC 4 cut(s) 124, 211, 443, 671
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 2 cut(s) 26, 184
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 2 cut(s) 328, 481
MnlI CCTC 9 cut(s) 146, 168, 257, 345, 398, 499, 519, 652, 673
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MseI TTAA 1 cut(s) 183
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 2 cut(s) 136, 395
MspR9I CCNGG 5 cut(s) 136, 137, 165, 395, 484
MvaI CCWGG 2 cut(s) 165, 484
MvnI CGCG 3 cut(s) 40, 342, 600
MwoI GCNNNNNNNGC 8 cut(s) 53, 119, 198, 291, 487, 573, 597, 618
NciI CCSGG 3 cut(s) 136, 137, 395
NdeII GATC 4 cut(s) 34, 167, 383, 431
NlaIII CATG 2 cut(s) 148, 472
NlaIV GGNNCC 5 cut(s) 123, 133, 392, 440, 668
PkrI GCNGC 4 cut(s) 179, 341, 344, 701
PleI GAGTC 2 cut(s) 327, 480
PmaCI CACGTG 1 cut(s) 128
PmlI CACGTG 1 cut(s) 128
PpsI GAGTC 2 cut(s) 327, 480
Ppu21I YACGTR 1 cut(s) 128
PpuMI RGGWCCY 2 cut(s) 155, 390
Psp5II RGGWCCY 2 cut(s) 155, 390
Psp6I CCWGG 2 cut(s) 163, 482
PspCI CACGTG 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 2 cut(s) 163, 482
PspN4I GGNNCC 5 cut(s) 123, 133, 392, 440, 668
PspPI GGNCC 2 cut(s) 155, 390
PspPPI RGGWCCY 2 cut(s) 155, 390
PsuI RGATCY 2 cut(s) 167, 431
SacII CCGCGG 1 cut(s) 343
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 4 cut(s) 178, 340, 343, 700
Sau3AI GATC 4 cut(s) 34, 167, 383, 431
Sau96I GGNCC 2 cut(s) 155, 390
SchI GAGTC 2 cut(s) 328, 481
ScrFI CCNGG 5 cut(s) 136, 137, 165, 395, 484
SduI GDGCHC 4 cut(s) 124, 211, 443, 671
SfaNI GCATC 2 cut(s) 34, 43
SfcI CTRYAG 1 cut(s) 376
Sfr303I CCGCGG 1 cut(s) 343
SgrBI CCGCGG 1 cut(s) 343
SinI GGWCC 2 cut(s) 155, 390
SmaI CCCGGG 1 cut(s) 137
Sse9I AATT 2 cut(s) 26, 184
SsiI CCGC 7 cut(s) 38, 316, 340, 342, 598, 697, 700
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 5 cut(s) 134, 135, 163, 393, 482
StyI CCWWGG 1 cut(s) 653
TaiI ACGT 2 cut(s) 130, 331
TasI AATT 2 cut(s) 26, 184
TauI GCSGC 3 cut(s) 342, 345, 702
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 2 cut(s) 209, 287
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 424
TspMI CCCGGG 1 cut(s) 135
TspRI CASTG 2 cut(s) 209, 287
VpaK11BI GGWCC 2 cut(s) 155, 390
XapI RAATTY 1 cut(s) 26
XmaI CCCGGG 1 cut(s) 135
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.