MD12G1131700.v1.1

serine arginine-rich splicing factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
20677551 .. 20680759
3209 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1131700.v1.1.491

Sequence Viewer

Length: 930 bp
ATGCCTCGTTATGATGATCGATATGGCAACACCCGTCTTTATGTTGGTCGGTTGTCTTCACGCACGCGTTCACGTGATCTAGAACGGCTGTTCAACAGATATGGAAGAGTACGTGATGTGGACATGAAGCGGGAGTTTGCTTTTGTTGACTTTAGTGATCCTCGAGATGCTGATGATGCAAGATATAGCTTAGATGGTCGGGAATTTGATGGAAGTCGTCTCATTGTGGAATTTGCAAAAGGGGCACCACGTGGTTCGCGGGAATATTTAGGCAGAGGTCCTACTCCTGGATCTGGACGTTGCTTTAATTGTGGCATTGACGGCCACTGGGCTCGTGATTGCAAGGCTGGGGACTGGAAGAATAAGTGCTATCGCTGTGGAGAAAGAGGCCATATTGAAAGGCAGTGCAAAAATAGTCCAAAGGAATTAAGTCGCGGGCGGAGTCGCTCACCAGTTGGATCACGTTCTCGCCGTGGAAGAAGCCGTAGCCCAAGTTACAGCCGAAGCCGCAGCTATAGCCGTTCAAGGTCCCCAGCAAGGAGAGGGCGAAGTGAGGATCGCTATGACAGATCACGGAGCCCTTCTTACAGGAAGAGTCCACTGCCCTCAAAAGGAGGGAGGAAGCGCAGCCTGACACCTGATGTAGACAGTCCTCGTGGGAGACGTAGCCCTTCCCCCAGAAATGGTAGAATGGAAATGGAGAAAGAGGGCTCTGATTACAGCCCCAGGGTAAGAAGTAGAAGTCCGGTTAGCCCCAGGTTAAGGAGCAGAAGTCCTGTTAGCCCTGGTAGAGACAGCCCTGTTGTCAGGAAGTATCCAAGCCCTTCTGAAGCCGATGGTCGCGGTCGCAGTCCCAGTCCCGATCGGAGCCCCGTCGCTGATTATGATGATGACAACCGTCGCACTCCCAGAGGCAGCGAGTCACCATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

310

Amino Acids

35.33

Weight (kDa)

10.92

Isoelectric Point (pI)

96.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 13 - 74 6.6e-14 RNA recognition motif
zf-CCHC PF00098 100 - 115 3e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccI GTMKAC 1 cut(s) 645
AccII CGCG 4 cut(s) 67, 259, 435, 843
AciI CCGC 6 cut(s) 130, 259, 435, 439, 508, 843
AclWI GGATC 4 cut(s) 152, 298, 466, 564
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 2 cut(s) 203, 230
AcuI CTGAAG 1 cut(s) 849
AcvI CACGTG 2 cut(s) 74, 251
AdeI CACNNNGTG 1 cut(s) 251
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 6 cut(s) 287, 293, 537, 611, 683, 762
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 3 cut(s) 94, 398, 525
AjnI CCWGG 4 cut(s) 286, 725, 755, 784
AluBI AGCT 2 cut(s) 189, 513
AluI AGCT 2 cut(s) 189, 513
Alw26I GTCTC 3 cut(s) 224, 655, 786
AlwI GGATC 4 cut(s) 152, 298, 466, 564
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 2 cut(s) 322, 388
ApeKI GCWGC 3 cut(s) 510, 627, 915
ApoI RAATTY 2 cut(s) 203, 230
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 2 cut(s) 278, 528
AsuHPI GGTGA 2 cut(s) 441, 915
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 2 cut(s) 278, 528
BaeGI GKGCMC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 4 cut(s) 334, 581, 713, 872
BauI CACGAG 2 cut(s) 333, 654
BbrPI CACGTG 2 cut(s) 74, 251
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 522, 639
BccI CCATC 3 cut(s) 188, 203, 830
BceAI ACGGC 5 cut(s) 101, 337, 456, 468, 504
BciT130I CCWGG 4 cut(s) 288, 727, 757, 786
BciVI GTATCC 1 cut(s) 825
BcoDI GTCTC 3 cut(s) 224, 655, 786
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 514
BfuI GTATCC 1 cut(s) 825
BisI GCNGC 4 cut(s) 508, 511, 628, 916
BlsI GCNGC 4 cut(s) 509, 512, 629, 917
Bme1390I CCNGG 4 cut(s) 288, 727, 757, 786
Bme18I GGWCC 2 cut(s) 278, 528
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 278, 528
BmiI GGNNCC 4 cut(s) 246, 530, 578, 869
BmrFI CCNGG 4 cut(s) 288, 727, 757, 786
BmrI ACTGGG 2 cut(s) 337, 849
BmsI GCATC 2 cut(s) 157, 166
BmuI ACTGGG 2 cut(s) 337, 849
BoxI GACNNNNGTC 1 cut(s) 897
BpiI GAAGAC 1 cut(s) 48
Bsa29I ATCGAT 1 cut(s) 19
BsaAI YACGTR 3 cut(s) 74, 113, 251
BsaJI CCNNGG 5 cut(s) 472, 725, 726, 755, 784
BsaWI WCCGGW 1 cut(s) 745
BsaXI ACNNNNNCTCC 2 cut(s) 757, 787
Bsc4I CCNNNNNNNGG 6 cut(s) 287, 293, 537, 611, 683, 762
Bse1I ACTGG 4 cut(s) 332, 359, 452, 855
BseBI CCWGG 4 cut(s) 288, 727, 757, 786
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 5 cut(s) 472, 725, 726, 755, 784
BseLI CCNNNNNNNGG 6 cut(s) 287, 293, 537, 611, 683, 762
BseNI ACTGG 4 cut(s) 332, 359, 452, 855
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 2 cut(s) 522, 639
BseYI CCCAGC 2 cut(s) 347, 532
Bsh1236I CGCG 4 cut(s) 67, 259, 435, 843
Bsh1285I CGRYCG 2 cut(s) 847, 865
BshFI GGCC 2 cut(s) 324, 390
BshNI GGYRCC 1 cut(s) 244
BshVI ATCGAT 1 cut(s) 19
BsiEI CGRYCG 2 cut(s) 847, 865
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 1 cut(s) 746
BslFI GGGAC 4 cut(s) 365, 514, 837, 843
BslI CCNNNNNNNGG 6 cut(s) 287, 293, 537, 611, 683, 762
BsmAI GTCTC 3 cut(s) 224, 655, 786
BsmBI CGTCTC 2 cut(s) 224, 655
BsmFI GGGAC 4 cut(s) 365, 514, 837, 843
BsnI GGCC 2 cut(s) 324, 390
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 5 cut(s) 247, 334, 581, 713, 872
Bsp143I GATC 8 cut(s) 16, 76, 157, 290, 458, 556, 569, 862
BspACI CCGC 6 cut(s) 130, 259, 435, 439, 508, 843
BspANI GGCC 2 cut(s) 324, 390
BspDI ATCGAT 1 cut(s) 19
BspFNI CGCG 4 cut(s) 67, 259, 435, 843
BspLI GGNNCC 4 cut(s) 246, 530, 578, 869
BspPI GGATC 4 cut(s) 152, 298, 466, 564
BspT107I GGYRCC 1 cut(s) 244
BsrI ACTGG 4 cut(s) 332, 359, 452, 855
BssECI CCNNGG 5 cut(s) 472, 725, 726, 755, 784
BssMI GATC 8 cut(s) 16, 76, 157, 290, 458, 556, 569, 862
BssSI CACGAG 2 cut(s) 333, 654
Bst2BI CACGAG 2 cut(s) 333, 654
Bst2UI CCWGG 4 cut(s) 288, 727, 757, 786
Bst4CI ACNGT 2 cut(s) 650, 899
Bst6I CTCTTC 2 cut(s) 100, 587
BstBAI YACGTR 3 cut(s) 74, 113, 251
BstC8I GCNNGC 2 cut(s) 65, 437
BstDEI CTNAG 1 cut(s) 190
BstDSI CCRYGG 1 cut(s) 472
BstFNI CGCG 4 cut(s) 67, 259, 435, 843
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 8 cut(s) 19, 79, 160, 293, 461, 559, 572, 865
BstMAI GTCTC 3 cut(s) 224, 655, 786
BstMBI GATC 8 cut(s) 16, 76, 157, 290, 458, 556, 569, 862
BstMCI CGRYCG 2 cut(s) 847, 865
BstMWI GCNNNNNNNGC 5 cut(s) 176, 242, 321, 507, 516
BstNI CCWGG 4 cut(s) 288, 727, 757, 786
BstPAI GACNNNNGTC 1 cut(s) 897
BstSCI CCNGG 4 cut(s) 286, 725, 755, 784
BstSFI CTRYAG 1 cut(s) 514
BstSLI GKGCMC 1 cut(s) 247
BstUI CGCG 4 cut(s) 67, 259, 435, 843
BstV1I GCAGC 2 cut(s) 522, 639
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
Bsu15I ATCGAT 1 cut(s) 19
BsuI GTATCC 1 cut(s) 825
BsuRI GGCC 2 cut(s) 324, 390
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 472
BtsI GCAGTG 2 cut(s) 410, 599
BtsIMutI CAGTG 3 cut(s) 325, 410, 599
Cac8I GCNNGC 2 cut(s) 65, 437
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 2 cut(s) 278, 528
ClaI ATCGAT 1 cut(s) 19
Csp6I GTAC 1 cut(s) 110
CviAII CATG 1 cut(s) 124
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 190
DpnI GATC 8 cut(s) 18, 78, 159, 292, 460, 558, 571, 864
DpnII GATC 8 cut(s) 16, 76, 157, 290, 458, 556, 569, 862
DraIII CACNNNGTG 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 100, 587
EarI CTCTTC 2 cut(s) 100, 587
EciI GGCGGA 1 cut(s) 454
Eco24I GRGCYC 4 cut(s) 334, 581, 713, 872
Eco47I GGWCC 2 cut(s) 278, 528
Eco57I CTGAAG 1 cut(s) 849
Eco72I CACGTG 2 cut(s) 74, 251
Eco88I CYCGRG 1 cut(s) 162
EcoO109I RGGNCCY 2 cut(s) 278, 528
EcoRII CCWGG 4 cut(s) 286, 725, 755, 784
EcoT38I GRGCYC 4 cut(s) 334, 581, 713, 872
Esp3I CGTCTC 2 cut(s) 224, 655
FaeI CATG 1 cut(s) 127
FaqI GGGAC 4 cut(s) 365, 514, 837, 843
FatI CATG 1 cut(s) 123
FauI CCCGC 3 cut(s) 123, 252, 428
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 4 cut(s) 508, 511, 628, 916
FriOI GRGCYC 4 cut(s) 334, 581, 713, 872
Fsp4HI GCNGC 4 cut(s) 508, 511, 628, 916
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 626
GluI GCNGC 4 cut(s) 508, 511, 628, 916
GsaI CCCAGC 2 cut(s) 351, 536
HaeIII GGCC 2 cut(s) 324, 390
HapII CCGG 1 cut(s) 746
HhaI GCGC 1 cut(s) 627
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 442, 595, 920
HpaII CCGG 1 cut(s) 746
HphI GGTGA 2 cut(s) 441, 915
Hpy166II GTNNAC 5 cut(s) 71, 121, 148, 599, 646
Hpy188I TCNGA 3 cut(s) 715, 829, 867
Hpy188III TCNNGA 7 cut(s) 80, 164, 200, 294, 335, 808, 860
Hpy8I GTNNAC 5 cut(s) 71, 121, 148, 599, 646
Hpy99I CGWCG 2 cut(s) 878, 903
HpyAV CCTTC 3 cut(s) 591, 681, 834
HpyCH4III ACNGT 2 cut(s) 650, 899
HpyCH4IV ACGT 6 cut(s) 73, 112, 250, 298, 463, 664
HpyCH4V TGCA 4 cut(s) 179, 236, 342, 408
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 242, 321, 507, 516
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 6 cut(s) 73, 112, 250, 298, 463, 664
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 625
Kzo9I GATC 8 cut(s) 16, 76, 157, 290, 458, 556, 569, 862
LmnI GCTCC 3 cut(s) 576, 765, 867
Lsp1109I GCAGC 2 cut(s) 522, 639
LweI GCATC 2 cut(s) 157, 166
MaeI CTAG 1 cut(s) 80
MaeII ACGT 6 cut(s) 73, 112, 250, 298, 463, 664
MaeIII GTNAC 2 cut(s) 494, 921
MalI GATC 8 cut(s) 18, 78, 159, 292, 460, 558, 571, 864
MboI GATC 8 cut(s) 16, 76, 157, 290, 458, 556, 569, 862
MboII GAAGA 5 cut(s) 48, 117, 370, 489, 604
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 5 cut(s) 247, 334, 581, 713, 872
MluCI AATT 4 cut(s) 203, 230, 307, 425
MluI ACGCGT 1 cut(s) 65
MlyI GAGTC 3 cut(s) 451, 604, 929
MmeI TCCRAC 1 cut(s) 436
MseI TTAA 3 cut(s) 306, 428, 761
MspI CCGG 1 cut(s) 746
MspR9I CCNGG 4 cut(s) 288, 727, 757, 786
MvaI CCWGG 4 cut(s) 288, 727, 757, 786
MvnI CGCG 4 cut(s) 67, 259, 435, 843
MwoI GCNNNNNNNGC 5 cut(s) 176, 242, 321, 507, 516
NdeII GATC 8 cut(s) 16, 76, 157, 290, 458, 556, 569, 862
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 4 cut(s) 246, 530, 578, 869
NmuCI GTSAC 1 cut(s) 921
PaeR7I CTCGAG 1 cut(s) 162
PasI CCCWGGG 1 cut(s) 726
PcsI WCGNNNNNNNCGW 2 cut(s) 469, 661
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 4 cut(s) 509, 512, 629, 917
Ple19I CGATCG 1 cut(s) 865
PleI GAGTC 3 cut(s) 450, 603, 928
PmaCI CACGTG 2 cut(s) 74, 251
PmlI CACGTG 2 cut(s) 74, 251
PpsI GAGTC 3 cut(s) 450, 603, 928
Ppu21I YACGTR 3 cut(s) 74, 113, 251
PpuMI RGGWCCY 2 cut(s) 278, 528
PshAI GACNNNNGTC 1 cut(s) 897
Psp5II RGGWCCY 2 cut(s) 278, 528
Psp6I CCWGG 4 cut(s) 286, 725, 755, 784
PspCI CACGTG 2 cut(s) 74, 251
PspFI CCCAGC 2 cut(s) 347, 532
PspGI CCWGG 4 cut(s) 286, 725, 755, 784
PspN4I GGNNCC 4 cut(s) 246, 530, 578, 869
PspPI GGNCC 2 cut(s) 278, 528
PspPPI RGGWCCY 2 cut(s) 278, 528
PsuI RGATCY 1 cut(s) 290
PvuI CGATCG 1 cut(s) 865
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 3 cut(s) 306, 428, 761
SatI GCNGC 4 cut(s) 508, 511, 628, 916
Sau3AI GATC 8 cut(s) 16, 76, 157, 290, 458, 556, 569, 862
Sau96I GGNCC 2 cut(s) 278, 528
SchI GAGTC 3 cut(s) 451, 604, 929
ScrFI CCNGG 4 cut(s) 288, 727, 757, 786
SduI GDGCHC 5 cut(s) 247, 334, 581, 713, 872
SfaNI GCATC 2 cut(s) 157, 166
SfcI CTRYAG 1 cut(s) 514
Sfr274I CTCGAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 278, 528
SlaI CTCGAG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
Sse9I AATT 4 cut(s) 203, 230, 307, 425
SsiI CCGC 6 cut(s) 130, 259, 435, 439, 508, 843
SspI AATATT 1 cut(s) 266
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 4 cut(s) 286, 725, 755, 784
TaaI ACNGT 2 cut(s) 650, 899
TaiI ACGT 6 cut(s) 76, 115, 253, 301, 466, 667
TaqI TCGA 2 cut(s) 19, 163
TasI AATT 4 cut(s) 203, 230, 307, 425
TauI GCSGC 1 cut(s) 510
Tru1I TTAA 3 cut(s) 306, 428, 761
Tru9I TTAA 3 cut(s) 306, 428, 761
TscAI CASTG 3 cut(s) 332, 410, 606
TseFI GTSAC 1 cut(s) 921
TseI GCWGC 3 cut(s) 510, 627, 915
Tsp45I GTSAC 1 cut(s) 921
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 589
TspRI CASTG 3 cut(s) 332, 410, 606
VpaK11BI GGWCC 2 cut(s) 278, 528
XapI RAATTY 2 cut(s) 203, 230
XbaI TCTAGA 1 cut(s) 79
XhoI CTCGAG 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.