AT3G53500

Serine arginine-rich splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005963
Physical Location & Seq
Reverse (-)
19834240 .. 19837088
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53500.1

Sequence Viewer

Length: 732 bp
ATGAAGCGTGATTATGCCTTTGTTGAATTTAGTGATCCTCGTGATGCTGATGACGCAAGATATTACTTGGATGGACGGGATTTCGATGGAAGTCGCATCACTGTGGAGGCATCAAGAGGGGCTCCTCGTGGTTCGCGGGACAATGGTAGCAGAGGCCCACCTCCTGGTTCTGGTCGCTGTTTTAATTGTGGTGTCGATGGCCACTGGGCCCGAGACTGCACAGCAGGAGACTGGAAGAATAAATGTTACCGCTGTGGTGAAAGAGGACACATTGAGAGAAACTGCAAAAACAGTCCTAGTCCAAAGAAGGCCAGGCAGGGTGGAAGCTATTCCAGGTCACCAGTCAAATCCCGCTCCCCTCGTCGCCGAAGGAGCCCAAGCCGTAGCCGTAGTTACAGTCGAGGTCGCAGCTACAGTCGATCGCGATCCCCAGTGAGAAGAGAGAAAAGCGTGGAGGACAGATCACGCAGTCCTAAGGCAATGGAGCGATCTGTATCTCCCAAAGGTAGGGACCAAAGCCTGAGTCCAGACCGAAAAGTGATAGATGCAAGCCCAAAGCGTGGATCAGACTATGATGGTAGCCCAAAAGAGAATGGTAATGGCAGGAACTCTGCGAGTCCCATTGTTGGAGGTGGTGAAAGTCCTGTTGGACTTAATGGTCAAGACAGGAGCCCGATTGATGATGAGGCTGAGCTTAGCCGTCCTTCCCCTAAAGGCAGTGAGTCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033119 GO:0034613 GO:0034622 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0045934 GO:0046483 GO:0046907 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050657 GO:0050658 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 zf-CCHC

Protein Analysis

243

Amino Acids

26.77

Weight (kDa)

10.08

Isoelectric Point (pI)

95.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 59 - 74 5.2e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 657
AccB7I CCANNNNNTGG 2 cut(s) 164, 560
AccBSI CCGCTC 1 cut(s) 354
AccII CGCG 2 cut(s) 136, 424
AciI CCGC 3 cut(s) 136, 250, 352
AclWI GGATC 3 cut(s) 29, 420, 571
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 1 cut(s) 26
AfiI CCNNNNNNNGG 5 cut(s) 164, 170, 507, 560, 626
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 3 cut(s) 163, 311, 332
AjuI GAANNNNNNNTTGG 2 cut(s) 630, 662
AluBI AGCT 3 cut(s) 327, 411, 694
AluI AGCT 3 cut(s) 327, 411, 694
Alw26I GTCTC 2 cut(s) 207, 222
AlwI GGATC 3 cut(s) 29, 420, 571
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 4 cut(s) 154, 199, 207, 309
ApaI GGGCCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 408
ApoI RAATTY 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 508, 540
Asp700I GAANNNNTTC 1 cut(s) 328
AspS9I GGNCC 4 cut(s) 155, 207, 208, 511
AsuHPI GGTGA 4 cut(s) 269, 330, 647, 717
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 1 cut(s) 511
AxyI CCTNAGG 1 cut(s) 474
BaeGI GKGCMC 1 cut(s) 211
BalI TGGCCA 1 cut(s) 201
BanII GRGCYC 4 cut(s) 124, 211, 377, 674
BauI CACGAG 2 cut(s) 39, 126
BbvI GCAGC 1 cut(s) 420
BccI CCATC 4 cut(s) 65, 80, 191, 569
BceAI ACGGC 3 cut(s) 366, 372, 684
BciT130I CCWGG 3 cut(s) 165, 313, 334
BcoDI GTCTC 2 cut(s) 207, 222
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 412
BisI GCNGC 1 cut(s) 409
BlpI GCTNAGC 2 cut(s) 690, 695
BlsI GCNGC 1 cut(s) 410
Bme1390I CCNGG 3 cut(s) 165, 313, 334
Bme18I GGWCC 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 4 cut(s) 155, 207, 208, 511
BmiI GGNNCC 5 cut(s) 123, 209, 374, 512, 671
BmrFI CCNGG 3 cut(s) 165, 313, 334
BmrI ACTGGG 2 cut(s) 214, 425
BmsI GCATC 4 cut(s) 34, 105, 119, 535
BmuI ACTGGG 2 cut(s) 214, 425
Bpu1102I GCTNAGC 2 cut(s) 690, 695
BsaBI GATNNNNATC 2 cut(s) 424, 493
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 170, 507, 560, 626
Bse1I ACTGG 4 cut(s) 209, 236, 341, 431
Bse21I CCTNAGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 486
Bse8I GATNNNNATC 2 cut(s) 424, 493
BseBI CCWGG 3 cut(s) 165, 313, 334
BseGI GGATG 1 cut(s) 76
BseJI GATNNNNATC 2 cut(s) 424, 493
BseLI CCNNNNNNNGG 5 cut(s) 164, 170, 507, 560, 626
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 2 cut(s) 512, 681
BseNI ACTGG 4 cut(s) 209, 236, 341, 431
BseRI GAGGAG 1 cut(s) 114
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 1 cut(s) 420
BsgI GTGCAG 1 cut(s) 202
Bsh1236I CGCG 2 cut(s) 136, 424
Bsh1285I CGRYCG 1 cut(s) 422
BshFI GGCC 4 cut(s) 156, 201, 209, 311
BsiEI CGRYCG 1 cut(s) 422
BsiHKCI CYCGRG 1 cut(s) 210
BslFI GGGAC 3 cut(s) 152, 524, 603
BslI CCNNNNNNNGG 5 cut(s) 164, 170, 507, 560, 626
BsmAI GTCTC 2 cut(s) 207, 222
BsmFI GGGAC 3 cut(s) 152, 524, 603
BsnI GGCC 4 cut(s) 156, 201, 209, 311
BsoBI CYCGRG 1 cut(s) 210
Bsp120I GGGCCC 1 cut(s) 207
Bsp1286I GDGCHC 4 cut(s) 124, 211, 377, 674
Bsp143I GATC 6 cut(s) 34, 419, 425, 461, 488, 563
Bsp1720I GCTNAGC 2 cut(s) 690, 695
Bsp68I TCGCGA 1 cut(s) 424
BspACI CCGC 3 cut(s) 136, 250, 352
BspANI GGCC 4 cut(s) 156, 201, 209, 311
BspCNI CTCAG 2 cut(s) 513, 682
BspFNI CGCG 2 cut(s) 136, 424
BspLI GGNNCC 5 cut(s) 123, 209, 374, 512, 671
BspPI GGATC 3 cut(s) 29, 420, 571
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 4 cut(s) 209, 236, 341, 431
BssMI GATC 6 cut(s) 34, 419, 425, 461, 488, 563
BssSI CACGAG 2 cut(s) 39, 126
Bst2BI CACGAG 2 cut(s) 39, 126
Bst2UI CCWGG 3 cut(s) 165, 313, 334
Bst4CI ACNGT 4 cut(s) 103, 293, 398, 416
Bst6I CTCTTC 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 4 cut(s) 474, 521, 690, 695
BstEII GGTNACC 1 cut(s) 336
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 2 cut(s) 136, 424
BstKTI GATC 6 cut(s) 37, 422, 428, 464, 491, 566
BstMAI GTCTC 2 cut(s) 207, 222
BstMBI GATC 6 cut(s) 34, 419, 425, 461, 488, 563
BstMCI CGRYCG 1 cut(s) 422
BstMWI GCNNNNNNNGC 2 cut(s) 53, 372
BstNI CCWGG 3 cut(s) 165, 313, 334
BstPI GGTNACC 1 cut(s) 336
BstSCI CCNGG 3 cut(s) 163, 311, 332
BstSFI CTRYAG 1 cut(s) 412
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 2 cut(s) 136, 424
BstV1I GCAGC 1 cut(s) 420
Bsu36I CCTNAGG 1 cut(s) 474
BsuRI GGCC 4 cut(s) 156, 201, 209, 311
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 724
BtsIMutI CAGTG 4 cut(s) 99, 202, 438, 724
BtuMI TCGCGA 1 cut(s) 424
Cac8I GCNNGC 1 cut(s) 550
Cfr13I GGNCC 4 cut(s) 155, 207, 208, 511
CseI GACGC 1 cut(s) 62
DdeI CTNAG 4 cut(s) 474, 521, 690, 695
DpnI GATC 6 cut(s) 36, 421, 427, 463, 490, 565
DpnII GATC 6 cut(s) 34, 419, 425, 461, 488, 563
DrdI GACNNNNNNGTC 1 cut(s) 657
DseDI GACNNNNNNGTC 1 cut(s) 657
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco24I GRGCYC 4 cut(s) 124, 211, 377, 674
Eco47I GGWCC 1 cut(s) 511
Eco81I CCTNAGG 1 cut(s) 474
Eco88I CYCGRG 1 cut(s) 210
Eco91I GGTNACC 1 cut(s) 336
EcoO65I GGTNACC 1 cut(s) 336
EcoRII CCWGG 3 cut(s) 163, 311, 332
EcoT38I GRGCYC 4 cut(s) 124, 211, 377, 674
FaiI YATR 2 cut(s) 15, 573
FaqI GGGAC 3 cut(s) 152, 524, 603
FauI CCCGC 2 cut(s) 129, 359
Fnu4HI GCNGC 1 cut(s) 409
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 4 cut(s) 124, 211, 377, 674
Fsp4HI GCNGC 1 cut(s) 409
FspBI CTAG 1 cut(s) 297
GluI GCNGC 1 cut(s) 409
HaeIII GGCC 4 cut(s) 156, 201, 209, 311
HgaI GACGC 1 cut(s) 62
HinfI GANTC 3 cut(s) 523, 616, 722
HphI GGTGA 4 cut(s) 269, 330, 647, 717
Hpy188I TCNGA 1 cut(s) 568
Hpy188III TCNNGA 5 cut(s) 41, 114, 423, 527, 662
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 3 cut(s) 301, 363, 714
HpyCH4III ACNGT 4 cut(s) 103, 293, 398, 416
HpyCH4V TGCA 3 cut(s) 219, 285, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 372
HpyF3I CTNAG 4 cut(s) 474, 521, 690, 695
Kzo9I GATC 6 cut(s) 34, 419, 425, 461, 488, 563
LmnI GCTCC 5 cut(s) 127, 359, 372, 484, 669
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 4 cut(s) 34, 105, 119, 535
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 4 cut(s) 245, 336, 392, 723
MalI GATC 6 cut(s) 36, 421, 427, 463, 490, 565
MbiI CCGCTC 1 cut(s) 354
MboI GATC 6 cut(s) 34, 419, 425, 461, 488, 563
MboII GAAGA 2 cut(s) 247, 450
MhlI GDGCHC 4 cut(s) 124, 211, 377, 674
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 2 cut(s) 26, 184
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 3 cut(s) 532, 625, 731
MmeI TCCRAC 2 cut(s) 607, 628
Mox20I TGGCCA 1 cut(s) 201
MroXI GAANNNNTTC 1 cut(s) 328
MscI TGGCCA 1 cut(s) 201
MseI TTAA 2 cut(s) 183, 654
MslI CAYNNNNRTG 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 252
MspR9I CCNGG 3 cut(s) 165, 313, 334
MvaI CCWGG 3 cut(s) 165, 313, 334
MvnI CGCG 2 cut(s) 136, 424
MwoI GCNNNNNNNGC 2 cut(s) 53, 372
NdeII GATC 6 cut(s) 34, 419, 425, 461, 488, 563
NlaIV GGNNCC 5 cut(s) 123, 209, 374, 512, 671
NmuCI GTSAC 2 cut(s) 336, 723
NruI TCGCGA 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 328
PflMI CCANNNNNTGG 2 cut(s) 164, 560
PkrI GCNGC 1 cut(s) 410
Ple19I CGATCG 1 cut(s) 422
PleI GAGTC 3 cut(s) 531, 624, 730
PpsI GAGTC 3 cut(s) 531, 624, 730
Psp6I CCWGG 3 cut(s) 163, 311, 332
PspEI GGTNACC 1 cut(s) 336
PspGI CCWGG 3 cut(s) 163, 311, 332
PspN4I GGNNCC 5 cut(s) 123, 209, 374, 512, 671
PspOMI GGGCCC 1 cut(s) 207
PspPI GGNCC 4 cut(s) 155, 207, 208, 511
PvuI CGATCG 1 cut(s) 422
RruI TCGCGA 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 2 cut(s) 183, 654
SatI GCNGC 1 cut(s) 409
Sau3AI GATC 6 cut(s) 34, 419, 425, 461, 488, 563
Sau96I GGNCC 4 cut(s) 155, 207, 208, 511
SchI GAGTC 3 cut(s) 532, 625, 731
ScrFI CCNGG 3 cut(s) 165, 313, 334
SduI GDGCHC 4 cut(s) 124, 211, 377, 674
SetI ASST 9 cut(s) 163, 329, 338, 406, 413, 508, 634, 696, 730
SfaNI GCATC 4 cut(s) 34, 105, 119, 535
SfcI CTRYAG 1 cut(s) 412
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 2 cut(s) 26, 184
SsiI CCGC 3 cut(s) 136, 250, 352
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 163, 311, 332
TaaI ACNGT 4 cut(s) 103, 293, 398, 416
TaqI TCGA 4 cut(s) 84, 195, 400, 418
TaqII GACCGA 1 cut(s) 546
TasI AATT 2 cut(s) 26, 184
Tru1I TTAA 2 cut(s) 183, 654
Tru9I TTAA 2 cut(s) 183, 654
TscAI CASTG 4 cut(s) 106, 209, 438, 724
TseFI GTSAC 2 cut(s) 336, 723
TseI GCWGC 1 cut(s) 408
Tsp45I GTSAC 2 cut(s) 336, 723
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 4 cut(s) 106, 209, 438, 724
Van91I CCANNNNNTGG 2 cut(s) 164, 560
VpaK11BI GGWCC 1 cut(s) 511
XapI RAATTY 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.