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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37370 AT2G37370 AT2G37370 AT2G37370 |
| fragaria_vesca | FvH4_6g14710 |
| malus_domestica | MD04G1116900.v1.1 MD04G1117000.v1.1 MD12G1132600.v1.1 |
| prunus_persica | Prupe.6G246700_v2.0.a1 Prupe.6G246700_v2.0.a1 |
| pyrus_communis | pycom04g10680 pycom12g12840 |
| rosa_chinensis | RchiOBHm_Chr3g0467931 |
| rosa_laevigata | RLG00000024467 |
| rosa_multiflora | Rmu_sc0001793.1_g000053 |
| rosa_roxburghii | Rroxscaffold_6G00413300 |
| rosa_rugosa | Rorug03G0090600 |
| rosa_samantha | Rh3AG139000 Rh3BG160600 Rh3CG160500 Rh3DG161100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1923 |
| AccB1I | GGYRCC | 1 cut(s) | 125 |
| AccI | GTMKAC | 1 cut(s) | 1923 |
| AccII | CGCG | 2 cut(s) | 182, 618 |
| AciI | CCGC | 6 cut(s) | 20, 45, 64, 102, 182, 1727 |
| AclWI | GGATC | 7 cut(s) | 150, 160, 371, 981, 1292, 1424, 1437 |
| AcsI | RAATTY | 5 cut(s) | 804, 1197, 1289, 1322, 1964 |
| AcuI | CTGAAG | 4 cut(s) | 340, 1047, 1232, 1854 |
| AcyI | GRCGYC | 2 cut(s) | 126, 1920 |
| AfaI | GTAC | 1 cut(s) | 361 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1261, 1481 |
| AjnI | CCWGG | 3 cut(s) | 138, 379, 1646 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1544, 1576 |
| AleI | CACNNNNGTG | 1 cut(s) | 873 |
| Alw26I | GTCTC | 3 cut(s) | 182, 1749, 1793 |
| AlwI | GGATC | 7 cut(s) | 150, 160, 371, 981, 1292, 1424, 1437 |
| Ama87I | CYCGRG | 3 cut(s) | 743, 1137, 1904 |
| ApeKI | GCWGC | 3 cut(s) | 493, 779, 1055 |
| ApoI | RAATTY | 5 cut(s) | 804, 1197, 1289, 1322, 1964 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1949, 1981 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 627 |
| AspLEI | GCGC | 2 cut(s) | 128, 618 |
| AspS9I | GGNCC | 1 cut(s) | 1564 |
| AsuC2I | CCSGG | 5 cut(s) | 390, 800, 1138, 1139, 1889 |
| AsuHPI | GGTGA | 9 cut(s) | 34, 52, 196, 404, 887, 1367, 1767, 1839, 1850 |
| AvaI | CYCGRG | 3 cut(s) | 743, 1137, 1904 |
| AvaII | GGWCC | 1 cut(s) | 1564 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 343, 376 |
| BamHI | GGATCC | 1 cut(s) | 1429 |
| BanI | GGYRCC | 1 cut(s) | 125 |
| BanII | GRGCYC | 2 cut(s) | 516, 1144 |
| BbsI | GAAGAC | 4 cut(s) | 377, 1758, 1860, 1890 |
| BbvI | GCAGC | 3 cut(s) | 480, 766, 1042 |
| BccI | CCATC | 4 cut(s) | 243, 439, 703, 1354 |
| BceAI | ACGGC | 1 cut(s) | 98 |
| BciT130I | CCWGG | 3 cut(s) | 140, 381, 1648 |
| BciVI | GTATCC | 1 cut(s) | 1510 |
| BclI | TGATCA | 1 cut(s) | 322 |
| BcnI | CCSGG | 5 cut(s) | 390, 800, 1138, 1139, 1889 |
| BcoDI | GTCTC | 3 cut(s) | 182, 1749, 1793 |
| BfaI | CTAG | 5 cut(s) | 719, 836, 1536, 1733, 1752 |
| BfmI | CTRYAG | 1 cut(s) | 1056 |
| BfoI | RGCGCY | 1 cut(s) | 129 |
| BfuI | GTATCC | 1 cut(s) | 1510 |
| BglII | AGATCT | 1 cut(s) | 1090 |
| BisI | GCNGC | 3 cut(s) | 494, 780, 1056 |
| BlpI | GCTNAGC | 1 cut(s) | 1101 |
| BlsI | GCNGC | 3 cut(s) | 495, 781, 1057 |
| Bme1390I | CCNGG | 8 cut(s) | 140, 381, 390, 800, 1138, 1139, 1648, 1889 |
| Bme18I | GGWCC | 1 cut(s) | 1564 |
| BmeT110I | CYCGRG | 3 cut(s) | 743, 1137, 1904 |
| BmgT120I | GGNCC | 1 cut(s) | 1564 |
| BmiI | GGNNCC | 3 cut(s) | 127, 1431, 1473 |
| BmrFI | CCNGG | 8 cut(s) | 140, 381, 390, 800, 1138, 1139, 1648, 1889 |
| BmrI | ACTGGG | 1 cut(s) | 1969 |
| BmsI | GCATC | 4 cut(s) | 156, 754, 791, 1594 |
| BmuI | ACTGGG | 1 cut(s) | 1969 |
| BoxI | GACNNNNGTC | 1 cut(s) | 731 |
| BpiI | GAAGAC | 4 cut(s) | 377, 1758, 1860, 1890 |
| BpmI | CTGGAG | 3 cut(s) | 1061, 1298, 1630 |
| Bpu10I | CCTNAGC | 1 cut(s) | 851 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1101 |
| BpuEI | CTTGAG | 4 cut(s) | 830, 1094, 1143, 1568 |
| BpuMI | CCSGG | 5 cut(s) | 390, 800, 1138, 1139, 1889 |
| BsaHI | GRCGYC | 2 cut(s) | 126, 1920 |
| BsaJI | CCNNGG | 3 cut(s) | 640, 1137, 1450 |
| BsaWI | WCCGGW | 1 cut(s) | 1832 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1261, 1481 |
| Bse118I | RCCGGY | 1 cut(s) | 104 |
| Bse1I | ACTGG | 3 cut(s) | 1315, 1920, 1964 |
| Bse3DI | GCAATG | 3 cut(s) | 115, 1159, 1614 |
| BseBI | CCWGG | 3 cut(s) | 140, 381, 1648 |
| BseDI | CCNNGG | 3 cut(s) | 640, 1137, 1450 |
| BseGI | GGATG | 5 cut(s) | 135, 285, 450, 1054, 1609 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1261, 1481 |
| BseMI | GCAATG | 3 cut(s) | 115, 1159, 1614 |
| BseMII | CTCAG | 1 cut(s) | 1092 |
| BseNI | ACTGG | 3 cut(s) | 1315, 1920, 1964 |
| BseRI | GAGGAG | 2 cut(s) | 259, 1467 |
| BseXI | GCAGC | 3 cut(s) | 480, 766, 1042 |
| BsgI | GTGCAG | 2 cut(s) | 254, 584 |
| Bsh1236I | CGCG | 2 cut(s) | 182, 618 |
| BshNI | GGYRCC | 1 cut(s) | 125 |
| BsiHKCI | CYCGRG | 3 cut(s) | 743, 1137, 1904 |
| BsiSI | CCGG | 6 cut(s) | 105, 390, 799, 1138, 1833, 1889 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1261, 1481 |
| BsmAI | GTCTC | 3 cut(s) | 182, 1749, 1793 |
| BsoBI | CYCGRG | 3 cut(s) | 743, 1137, 1904 |
| Bsp1286I | GDGCHC | 2 cut(s) | 516, 1144 |
| Bsp143I | GATC | 9 cut(s) | 14, 142, 152, 322, 376, 973, 1090, 1284, 1429 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1101 |
| BspACI | CCGC | 6 cut(s) | 20, 45, 64, 102, 182, 1727 |
| BspCNI | CTCAG | 1 cut(s) | 1093 |
| BspFNI | CGCG | 2 cut(s) | 182, 618 |
| BspHI | TCATGA | 2 cut(s) | 541, 1795 |
| BspLI | GGNNCC | 3 cut(s) | 127, 1431, 1473 |
| BspMAI | CTGCAG | 1 cut(s) | 1060 |
| BspPI | GGATC | 7 cut(s) | 150, 160, 371, 981, 1292, 1424, 1437 |
| BspQI | GCTCTTC | 2 cut(s) | 161, 1221 |
| BspT107I | GGYRCC | 1 cut(s) | 125 |
| BsrDI | GCAATG | 3 cut(s) | 115, 1159, 1614 |
| BsrFI | RCCGGY | 1 cut(s) | 104 |
| BsrI | ACTGG | 3 cut(s) | 1315, 1920, 1964 |
| BssAI | RCCGGY | 1 cut(s) | 104 |
| BssECI | CCNNGG | 3 cut(s) | 640, 1137, 1450 |
| BssMI | GATC | 9 cut(s) | 14, 142, 152, 322, 376, 973, 1090, 1284, 1429 |
| BssNI | GRCGYC | 2 cut(s) | 126, 1920 |
| BssT1I | CCWWGG | 1 cut(s) | 640 |
| Bst2UI | CCWGG | 3 cut(s) | 140, 381, 1648 |
| Bst4CI | ACNGT | 6 cut(s) | 70, 364, 580, 1779, 1819, 1856 |
| Bst6I | CTCTTC | 5 cut(s) | 161, 182, 192, 1221, 1926 |
| BstACI | GRCGYC | 2 cut(s) | 126, 1920 |
| BstC8I | GCNNGC | 4 cut(s) | 106, 750, 1144, 1727 |
| BstDEI | CTNAG | 6 cut(s) | 571, 729, 851, 1001, 1101, 1575 |
| BstF5I | GGATG | 5 cut(s) | 135, 285, 450, 1054, 1609 |
| BstFNI | CGCG | 2 cut(s) | 182, 618 |
| BstH2I | RGCGCY | 1 cut(s) | 129 |
| BstHHI | GCGC | 2 cut(s) | 128, 618 |
| BstKTI | GATC | 9 cut(s) | 17, 145, 155, 325, 379, 976, 1093, 1287, 1432 |
| BstMAI | GTCTC | 3 cut(s) | 182, 1749, 1793 |
| BstMBI | GATC | 9 cut(s) | 14, 142, 152, 322, 376, 973, 1090, 1284, 1429 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 72, 110, 677 |
| BstNI | CCWGG | 3 cut(s) | 140, 381, 1648 |
| BstNSI | RCATGY | 1 cut(s) | 752 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 731 |
| BstSCI | CCNGG | 8 cut(s) | 138, 379, 388, 798, 1136, 1137, 1646, 1887 |
| BstSFI | CTRYAG | 1 cut(s) | 1056 |
| BstUI | CGCG | 2 cut(s) | 182, 618 |
| BstV1I | GCAGC | 3 cut(s) | 480, 766, 1042 |
| BstV2I | GAAGAC | 4 cut(s) | 377, 1758, 1860, 1890 |
| BstX2I | RGATCY | 2 cut(s) | 1090, 1429 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1352 |
| BstYI | RGATCY | 2 cut(s) | 1090, 1429 |
| BsuI | GTATCC | 1 cut(s) | 1510 |
| BtsCI | GGATG | 5 cut(s) | 135, 285, 450, 1054, 1609 |
| BtsI | GCAGTG | 1 cut(s) | 555 |
| BtsIMutI | CAGTG | 1 cut(s) | 555 |
| Cac8I | GCNNGC | 4 cut(s) | 106, 750, 1144, 1727 |
| CciI | TCATGA | 2 cut(s) | 541, 1795 |
| CfoI | GCGC | 2 cut(s) | 128, 618 |
| Cfr10I | RCCGGY | 1 cut(s) | 104 |
| Cfr13I | GGNCC | 1 cut(s) | 1564 |
| Cfr9I | CCCGGG | 1 cut(s) | 1137 |
| CseI | GACGC | 1 cut(s) | 1979 |
| Csp6I | GTAC | 1 cut(s) | 360 |
| CviAII | CATG | 6 cut(s) | 542, 749, 970, 1251, 1305, 1796 |
| CviQI | GTAC | 1 cut(s) | 360 |
| DdeI | CTNAG | 6 cut(s) | 571, 729, 851, 1001, 1101, 1575 |
| DinI | GGCGCC | 1 cut(s) | 127 |
| DpnI | GATC | 9 cut(s) | 16, 144, 154, 324, 378, 975, 1092, 1286, 1431 |
| DpnII | GATC | 9 cut(s) | 14, 142, 152, 322, 376, 973, 1090, 1284, 1429 |
| Eam1104I | CTCTTC | 5 cut(s) | 161, 182, 192, 1221, 1926 |
| EarI | CTCTTC | 5 cut(s) | 161, 182, 192, 1221, 1926 |
| Eco130I | CCWWGG | 1 cut(s) | 640 |
| Eco24I | GRGCYC | 2 cut(s) | 516, 1144 |
| Eco47I | GGWCC | 1 cut(s) | 1564 |
| Eco57I | CTGAAG | 4 cut(s) | 340, 1047, 1232, 1854 |
| Eco88I | CYCGRG | 3 cut(s) | 743, 1137, 1904 |
| EcoRI | GAATTC | 1 cut(s) | 1964 |
| EcoRII | CCWGG | 3 cut(s) | 138, 379, 1646 |
| EcoT14I | CCWWGG | 1 cut(s) | 640 |
| EcoT38I | GRGCYC | 2 cut(s) | 516, 1144 |
| EgeI | GGCGCC | 1 cut(s) | 127 |
| EheI | GGCGCC | 1 cut(s) | 127 |
| ErhI | CCWWGG | 1 cut(s) | 640 |
| FaeI | CATG | 6 cut(s) | 545, 752, 973, 1254, 1308, 1799 |
| FatI | CATG | 6 cut(s) | 541, 748, 969, 1250, 1304, 1795 |
| FauI | CCCGC | 3 cut(s) | 38, 71, 1734 |
| FbaI | TGATCA | 1 cut(s) | 322 |
| FblI | GTMKAC | 1 cut(s) | 1923 |
| Fnu4HI | GCNGC | 3 cut(s) | 494, 780, 1056 |
| FokI | GGATG | 5 cut(s) | 122, 292, 457, 1061, 1616 |
| FriOI | GRGCYC | 2 cut(s) | 516, 1144 |
| Fsp4HI | GCNGC | 3 cut(s) | 494, 780, 1056 |
| FspBI | CTAG | 5 cut(s) | 719, 836, 1536, 1733, 1752 |
| GlaI | GCGC | 2 cut(s) | 127, 617 |
| GluI | GCNGC | 3 cut(s) | 494, 780, 1056 |
| GsuI | CTGGAG | 3 cut(s) | 1061, 1298, 1630 |
| HaeII | RGCGCY | 1 cut(s) | 129 |
| HapII | CCGG | 6 cut(s) | 105, 390, 799, 1138, 1833, 1889 |
| HgaI | GACGC | 1 cut(s) | 1979 |
| HhaI | GCGC | 2 cut(s) | 128, 618 |
| Hin1I | GRCGYC | 2 cut(s) | 126, 1920 |
| Hin1II | CATG | 6 cut(s) | 545, 752, 973, 1254, 1308, 1799 |
| Hin6I | GCGC | 2 cut(s) | 126, 616 |
| HinP1I | GCGC | 2 cut(s) | 126, 616 |
| HincII | GTYRAC | 2 cut(s) | 1117, 1924 |
| HindII | GTYRAC | 2 cut(s) | 1117, 1924 |
| HpaII | CCGG | 6 cut(s) | 105, 390, 799, 1138, 1833, 1889 |
| HphI | GGTGA | 9 cut(s) | 34, 52, 196, 404, 887, 1367, 1767, 1839, 1850 |
| Hpy166II | GTNNAC | 3 cut(s) | 25, 1117, 1924 |
| Hpy188I | TCNGA | 8 cut(s) | 121, 152, 337, 708, 928, 1451, 1813, 1989 |
| Hpy8I | GTNNAC | 3 cut(s) | 25, 1117, 1924 |
| Hpy99I | CGWCG | 4 cut(s) | 95, 1925, 1928, 1973 |
| HpyCH4III | ACNGT | 6 cut(s) | 70, 364, 580, 1779, 1819, 1856 |
| HpyCH4IV | ACGT | 2 cut(s) | 372, 1920 |
| HpyCH4V | TGCA | 7 cut(s) | 235, 565, 680, 782, 1058, 1207, 1607 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 72, 110, 677 |
| HpyF3I | CTNAG | 6 cut(s) | 571, 729, 851, 1001, 1101, 1575 |
| HpySE526I | ACGT | 2 cut(s) | 372, 1920 |
| Hsp92I | GRCGYC | 2 cut(s) | 126, 1920 |
| Hsp92II | CATG | 6 cut(s) | 545, 752, 973, 1254, 1308, 1799 |
| HspAI | GCGC | 2 cut(s) | 126, 616 |
| KasI | GGCGCC | 1 cut(s) | 125 |
| KroI | GCCGGC | 1 cut(s) | 104 |
| KroNI | GCCGGC | 1 cut(s) | 106 |
| Ksp22I | TGATCA | 1 cut(s) | 322 |
| Kzo9I | GATC | 9 cut(s) | 14, 142, 152, 322, 376, 973, 1090, 1284, 1429 |
| LguI | GCTCTTC | 2 cut(s) | 161, 1221 |
| Lsp1109I | GCAGC | 3 cut(s) | 480, 766, 1042 |
| LweI | GCATC | 4 cut(s) | 156, 754, 791, 1594 |
| MaeI | CTAG | 5 cut(s) | 719, 836, 1536, 1733, 1752 |
| MaeII | ACGT | 2 cut(s) | 372, 1920 |
| MaeIII | GTNAC | 3 cut(s) | 1190, 1373, 1582 |
| MalI | GATC | 9 cut(s) | 16, 144, 154, 324, 378, 975, 1092, 1286, 1431 |
| MboI | GATC | 9 cut(s) | 14, 142, 152, 322, 376, 973, 1090, 1284, 1429 |
| MfeI | CAATTG | 1 cut(s) | 1424 |
| MflI | RGATCY | 2 cut(s) | 1090, 1429 |
| MhlI | GDGCHC | 2 cut(s) | 516, 1144 |
| Mly113I | GGCGCC | 1 cut(s) | 126 |
| MlyI | GAGTC | 5 cut(s) | 1228, 1464, 1751, 1786, 1795 |
| MmeI | TCCRAC | 1 cut(s) | 1890 |
| MroNI | GCCGGC | 1 cut(s) | 104 |
| MroXI | GAANNNNTTC | 1 cut(s) | 627 |
| MseI | TTAA | 3 cut(s) | 659, 1064, 1592 |
| MslI | CAYNNNNRTG | 1 cut(s) | 873 |
| MspA1I | CMGCKG | 2 cut(s) | 493, 1039 |
| MspI | CCGG | 6 cut(s) | 105, 390, 799, 1138, 1833, 1889 |
| MspR9I | CCNGG | 8 cut(s) | 140, 381, 390, 800, 1138, 1139, 1648, 1889 |
| MunI | CAATTG | 1 cut(s) | 1424 |
| MvaI | CCWGG | 3 cut(s) | 140, 381, 1648 |
| MvnI | CGCG | 2 cut(s) | 182, 618 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 72, 110, 677 |
| NaeI | GCCGGC | 1 cut(s) | 106 |
| NarI | GGCGCC | 1 cut(s) | 126 |
| NciI | CCSGG | 5 cut(s) | 390, 800, 1138, 1139, 1889 |
| NdeII | GATC | 9 cut(s) | 14, 142, 152, 322, 376, 973, 1090, 1284, 1429 |
| NgoMIV | GCCGGC | 1 cut(s) | 104 |
| NlaIII | CATG | 6 cut(s) | 545, 752, 973, 1254, 1308, 1799 |
| NlaIV | GGNNCC | 3 cut(s) | 127, 1431, 1473 |
| NmeAIII | GCCGAG | 2 cut(s) | 1280, 1519 |
| NmuCI | GTSAC | 1 cut(s) | 1373 |
| NspI | RCATGY | 1 cut(s) | 752 |
| OliI | CACNNNNGTG | 1 cut(s) | 873 |
| PaeI | GCATGC | 1 cut(s) | 752 |
| PaeR7I | CTCGAG | 2 cut(s) | 743, 1904 |
| PagI | TCATGA | 2 cut(s) | 541, 1795 |
| PciSI | GCTCTTC | 2 cut(s) | 161, 1221 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 87 |
| PdiI | GCCGGC | 1 cut(s) | 106 |
| PdmI | GAANNNNTTC | 1 cut(s) | 627 |
| PfeI | GAWTC | 9 cut(s) | 86, 341, 553, 929, 966, 1309, 1532, 1641, 1844 |
| PfoI | TCCNGGA | 3 cut(s) | 138, 798, 1646 |
| PkrI | GCNGC | 3 cut(s) | 495, 781, 1057 |
| PleI | GAGTC | 5 cut(s) | 1228, 1463, 1750, 1786, 1795 |
| PluTI | GGCGCC | 1 cut(s) | 129 |
| PpsI | GAGTC | 5 cut(s) | 1228, 1463, 1750, 1786, 1795 |
| PshAI | GACNNNNGTC | 1 cut(s) | 731 |
| Psp6I | CCWGG | 3 cut(s) | 138, 379, 1646 |
| PspGI | CCWGG | 3 cut(s) | 138, 379, 1646 |
| PspN4I | GGNNCC | 3 cut(s) | 127, 1431, 1473 |
| PspPI | GGNCC | 1 cut(s) | 1564 |
| PspXI | VCTCGAGB | 1 cut(s) | 1904 |
| PstI | CTGCAG | 1 cut(s) | 1060 |
| PsuI | RGATCY | 2 cut(s) | 1090, 1429 |
| PvuII | CAGCTG | 2 cut(s) | 493, 1039 |
| RsaI | GTAC | 1 cut(s) | 361 |
| RsaNI | GTAC | 1 cut(s) | 360 |
| RseI | CAYNNNNRTG | 1 cut(s) | 873 |
| SalI | GTCGAC | 1 cut(s) | 1922 |
| SapI | GCTCTTC | 2 cut(s) | 161, 1221 |
| SaqAI | TTAA | 3 cut(s) | 659, 1064, 1592 |
| SatI | GCNGC | 3 cut(s) | 494, 780, 1056 |
| Sau3AI | GATC | 9 cut(s) | 14, 142, 152, 322, 376, 973, 1090, 1284, 1429 |
| Sau96I | GGNCC | 1 cut(s) | 1564 |
| SchI | GAGTC | 5 cut(s) | 1228, 1464, 1751, 1786, 1795 |
| ScrFI | CCNGG | 8 cut(s) | 140, 381, 390, 800, 1138, 1139, 1648, 1889 |
| SduI | GDGCHC | 2 cut(s) | 516, 1144 |
| SfaNI | GCATC | 4 cut(s) | 156, 754, 791, 1594 |
| SfcI | CTRYAG | 1 cut(s) | 1056 |
| SfoI | GGCGCC | 1 cut(s) | 127 |
| Sfr274I | CTCGAG | 2 cut(s) | 743, 1904 |
| SgrDI | CGTCGACG | 1 cut(s) | 1922 |
| SinI | GGWCC | 1 cut(s) | 1564 |
| SlaI | CTCGAG | 2 cut(s) | 743, 1904 |
| SmaI | CCCGGG | 1 cut(s) | 1139 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 873 |
| SmlI | CTYRAG | 6 cut(s) | 743, 809, 1073, 1158, 1547, 1904 |
| SmoI | CTYRAG | 6 cut(s) | 743, 809, 1073, 1158, 1547, 1904 |
| SphI | GCATGC | 1 cut(s) | 752 |
| SrfI | GCCCGGGC | 1 cut(s) | 1139 |
| SsiI | CCGC | 6 cut(s) | 20, 45, 64, 102, 182, 1727 |
| SspDI | GGCGCC | 1 cut(s) | 125 |
| SspMI | CTAG | 5 cut(s) | 719, 836, 1536, 1733, 1752 |
| StyD4I | CCNGG | 8 cut(s) | 138, 379, 388, 798, 1136, 1137, 1646, 1887 |
| StyI | CCWWGG | 1 cut(s) | 640 |
| TaaI | ACNGT | 6 cut(s) | 70, 364, 580, 1779, 1819, 1856 |
| TaiI | ACGT | 2 cut(s) | 375, 1923 |
| TfiI | GAWTC | 9 cut(s) | 86, 341, 553, 929, 966, 1309, 1532, 1641, 1844 |
| Tru1I | TTAA | 3 cut(s) | 659, 1064, 1592 |
| Tru9I | TTAA | 3 cut(s) | 659, 1064, 1592 |
| TscAI | CASTG | 1 cut(s) | 555 |
| TseFI | GTSAC | 1 cut(s) | 1373 |
| TseI | GCWGC | 3 cut(s) | 493, 779, 1055 |
| Tsp45I | GTSAC | 1 cut(s) | 1373 |
| TspDTI | ATGAA | 9 cut(s) | 413, 530, 558, 615, 1239, 1372, 1625, 1962, 1995 |
| TspGWI | ACGGA | 2 cut(s) | 79, 1941 |
| TspMI | CCCGGG | 1 cut(s) | 1137 |
| TspRI | CASTG | 1 cut(s) | 555 |
| VpaK11BI | GGWCC | 1 cut(s) | 1564 |
| XapI | RAATTY | 5 cut(s) | 804, 1197, 1289, 1322, 1964 |
| XbaI | TCTAGA | 3 cut(s) | 1535, 1732, 1751 |
| XceI | RCATGY | 1 cut(s) | 752 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 647 |
| XhoI | CTCGAG | 2 cut(s) | 743, 1904 |
| XmaI | CCCGGG | 1 cut(s) | 1137 |
| XmiI | GTMKAC | 1 cut(s) | 1923 |
| XmnI | GAANNNNTTC | 1 cut(s) | 627 |
| XspI | CTAG | 5 cut(s) | 719, 836, 1536, 1733, 1752 |
| ZraI | GACGTC | 1 cut(s) | 1921 |