Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009822

Physical Location & Seq

Genomic Coordinates Forward (+)

20222756 .. 20225804

Gene Structure 3049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1117000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGCGTTTTCTTAATCTGGTTGGCTTTTATTTTGGTAAAATGTTTTTCTTTGTTTTGTCCTTCAATACTTCAAGCAGGTTTCAGGAAGAAGAAGCACTCAGCTTTCGTGTAGCTAAAGCTAACGAAGTAAGCCAAGTTGAGAAGGAACTGGTGGCGGAGATCGGAAAACTTGAGAGGCAAAGAGAAGAACTCCAAAATGAACTGAAAAAGGTGATTATCGCATTGAAGGCCGTTCGTGCACGCCTTCACAATGCAAGGGAAGAAAGAGAACAATTTGATGAAGCAAGCAATCAGATTCTTGTACACATAAAAGCAAAGGAAGATGAGCTATCAAAATCTATTGATTCATGTAAAGCAGAAGCTGATGTTGTAAATACGTGGGTTAGTTTTTTGGAAGATACCTGGGTTCTGCAGTCTTCGTACACAGAGCACAAAGAGAAGCAGGTCAATGGCGAACTGGAGAGATATGGAGACTATTTTGTGAATTTGGTAATCCAACTTCTCTTTACTTACAAGGCAAACTTGGGATCGTCAATCACTCGCATAAGGACTCTCGTGGAGTGCTTGAACTCAAGTAAAGGAGCAAATATACCGGGCATAGATGATGGAAGTTCAAAAGAAAGCAACCCGAGGAAAAATCTTGTAGAGGATTATGTGGACATGGAAGCCAAGTTTCTGACCACCTTAAGTGTAGTAGATACCATGAAAAAGCAGTTCTACGTTCAAAGCGAAGGCATTTTCAGGAGAGATGATGAGAAGGTCAAAGAACTCTTTGATGCCATCAAAAATTTAAACGACGAATTTGAATCCATTGACAGACCAATATTGGAAACTGAAGCTTCGCCGCGAAGACCAGAGACGCCTTCTAGTGATAGGGCCATTACAAGTCCATCTCCTACCGCTACCTCTCCTTTGACAACCGGGACTCCAGAACTCAAACAGGATGCCAATTCTTCTTTGATTAAGGGAGAGAAGAAACTGGACCCAAAGGAAGATACAAAACTAGGGCAGGAACTTGGTAAGACTGCCCCATTGTCCACCGGGACTCCAGAACTCAAACAGGATACCAATTCTTCCTTGACTAAGAGGGAGAAGGCACTGGACCCAAAGGAAGATACAAAACTAGGGCCGGAACTTGGTAAAACTGCCCCATTGACCACCGGGAGTCCAGAACTCAAGCAGGATACCAATTCTTCCTTGACTAAGGGGGAGAAGACACTGGACCCAAAGGAAGATACAAAACTAGGACCGGAACTTGGTAAGACTGCCCCATTGACCACCGGGACTCCAGAACTCAAACAGGGTACCAATGCTTCCTTGACTAAGGGGGAGAAGACTCTGTACATAAAGGAAGACACAAAACTAGGGCCGCAACTTGGTAAGACTGCCCCATCGACCACCGGGACTCCAGAACTCAAACAGGATACCAATTCTTCCTTGACTAAGGGGGGAAGAGACATTGGACCCAAAGGAAGATACAAAACTAGGGCCGGAACTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

501

Amino Acids

55.65

Weight (kDa)

5.73

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37370 AT2G37370 AT2G37370 AT2G37370
fragaria_vesca	FvH4_6g14710
malus_domestica	MD04G1116900.v1.1 MD04G1117000.v1.1 MD12G1132600.v1.1
prunus_persica	Prupe.6G246700_v2.0.a1 Prupe.6G246700_v2.0.a1
pyrus_communis	pycom04g10680 pycom12g12840
rosa_chinensis	RchiOBHm_Chr3g0467931
rosa_laevigata	RLG00000024467
rosa_multiflora	Rmu_sc0001793.1_g000053
rosa_roxburghii	Rroxscaffold_6G00413300
rosa_rugosa	Rorug03G0090600
rosa_samantha	Rh3AG139000 Rh3BG160600 Rh3CG160500 Rh3DG161100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	66, 433
Acc65I	GGTACC	1 cut(s)	1304
AccB1I	GGYRCC	1 cut(s)	1304
AccII	CGCG	1 cut(s)	847
AciI	CCGC	4 cut(s)	155, 845, 900, 1370
AclWI	GGATC	1 cut(s)	535
AcsI	RAATTY	3 cut(s)	484, 787, 800
AcuI	CTGAAG	1 cut(s)	855
AcyI	GRCGYC	1 cut(s)	860
AfaI	GTAC	4 cut(s)	303, 422, 1306, 1343
AfiI	CCNNNNNNNGG	4 cut(s)	1136, 1256, 1376, 1497
AflII	CTTAAG	1 cut(s)	685
AgsI	TTSAA	7 cut(s)	64, 72, 226, 568, 615, 725, 806
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	6 cut(s)	102, 113, 119, 328, 362, 839
AluI	AGCT	6 cut(s)	102, 113, 119, 328, 362, 839
Alw21I	GWGCWC	2 cut(s)	241, 432
Alw26I	GTCTC	3 cut(s)	465, 851, 1449
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	535
AlwNI	CAGNNNCTG	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	5 cut(s)	228, 876, 1127, 1367, 1488
ApaLI	GTGCAC	1 cut(s)	237
ApoI	RAATTY	3 cut(s)	484, 787, 800
Asp718I	GGTACC	1 cut(s)	1304
AspS9I	GGNCC	9 cut(s)	876, 982, 1102, 1127, 1222, 1247, 1367, 1463, 1488
AsuC2I	CCSGG	6 cut(s)	594, 922, 1042, 1162, 1282, 1402
AsuHPI	GGTGA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	5 cut(s)	982, 1102, 1222, 1247, 1463
BaeGI	GKGCMC	1 cut(s)	241
BaeI	ACNNNNGTAYC	2 cut(s)	390, 423
BanI	GGYRCC	1 cut(s)	1304
BarI	GAAGNNNNNNTAC	6 cut(s)	483, 515, 1297, 1325, 1329, 1357
BauI	CACGAG	1 cut(s)	554
BbsI	GAAGAC	5 cut(s)	408, 856, 1220, 1340, 1359
Bbv12I	GWGCWC	2 cut(s)	241, 432
BccI	CCATC	4 cut(s)	599, 788, 898, 1399
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	403
BciVI	GTATCC	3 cut(s)	1057, 1177, 1417
BcnI	CCSGG	6 cut(s)	594, 922, 1042, 1162, 1282, 1402
BcoDI	GTCTC	3 cut(s)	465, 851, 1449
BfaI	CTAG	6 cut(s)	867, 1004, 1124, 1244, 1364, 1485
BfmI	CTRYAG	1 cut(s)	410
BfrI	CTTAAG	1 cut(s)	685
BfuAI	ACCTGC	2 cut(s)	66, 433
BfuI	GTATCC	3 cut(s)	1057, 1177, 1417
BisI	GCNGC	2 cut(s)	845, 1370
BlsI	GCNGC	2 cut(s)	846, 1371
Bme1390I	CCNGG	7 cut(s)	403, 594, 922, 1042, 1162, 1282, 1402
Bme18I	GGWCC	5 cut(s)	982, 1102, 1222, 1247, 1463
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	9 cut(s)	876, 982, 1102, 1127, 1222, 1247, 1367, 1463, 1488
BmiI	GGNNCC	5 cut(s)	984, 1104, 1224, 1306, 1465
BmrFI	CCNGG	7 cut(s)	403, 594, 922, 1042, 1162, 1282, 1402
BmsI	GCATC	2 cut(s)	766, 934
BpiI	GAAGAC	5 cut(s)	408, 856, 1220, 1340, 1359
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BpmI	CTGGAG	5 cut(s)	479, 912, 1032, 1272, 1392
BpuEI	CTTGAG	3 cut(s)	191, 556, 1160
BpuMI	CCSGG	6 cut(s)	594, 922, 1042, 1162, 1282, 1402
BsaAI	YACGTR	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	860
BsaJI	CCNNGG	2 cut(s)	402, 629
BsaWI	WCCGGW	1 cut(s)	1249
BsaXI	ACNNNNNCTCC	8 cut(s)	910, 940, 1030, 1060, 1270, 1300, 1390, 1420
Bsc4I	CCNNNNNNNGG	4 cut(s)	1136, 1256, 1376, 1497
Bse1I	ACTGG	5 cut(s)	153, 462, 984, 1104, 1224
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	2 cut(s)	402, 629
BseGI	GGATG	1 cut(s)	949
BseLI	CCNNNNNNNGG	4 cut(s)	1136, 1256, 1376, 1497
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	5 cut(s)	153, 462, 984, 1104, 1224
BseSI	GKGCMC	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	847
BshFI	GGCC	5 cut(s)	230, 878, 1129, 1369, 1490
BshNI	GGYRCC	1 cut(s)	1304
BsiHKAI	GWGCWC	2 cut(s)	241, 432
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	9 cut(s)	593, 921, 1041, 1130, 1161, 1250, 1281, 1401, 1491
BslFI	GGGAC	4 cut(s)	937, 1057, 1297, 1417
BslI	CCNNNNNNNGG	4 cut(s)	1136, 1256, 1376, 1497
BsmAI	GTCTC	3 cut(s)	465, 851, 1449
BsmBI	CGTCTC	1 cut(s)	851
BsmFI	GGGAC	4 cut(s)	937, 1057, 1297, 1417
BsnI	GGCC	5 cut(s)	230, 878, 1129, 1369, 1490
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	2 cut(s)	241, 432
Bsp1407I	TGTACA	2 cut(s)	301, 1341
Bsp143I	GATC	2 cut(s)	159, 527
BspACI	CCGC	4 cut(s)	155, 845, 900, 1370
BspANI	GGCC	5 cut(s)	230, 878, 1129, 1369, 1490
BspCNI	CTCAG	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	847
BspLI	GGNNCC	5 cut(s)	984, 1104, 1224, 1306, 1465
BspMAI	CTGCAG	1 cut(s)	414
BspMI	ACCTGC	2 cut(s)	66, 433
BspPI	GGATC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	1304
BspTI	CTTAAG	1 cut(s)	685
BsrGI	TGTACA	2 cut(s)	301, 1341
BsrI	ACTGG	5 cut(s)	153, 462, 984, 1104, 1224
BssECI	CCNNGG	2 cut(s)	402, 629
BssMI	GATC	2 cut(s)	159, 527
BssNI	GRCGYC	1 cut(s)	860
BssSI	CACGAG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	1447
BstACI	GRCGYC	1 cut(s)	860
BstAFI	CTTAAG	1 cut(s)	685
BstAUI	TGTACA	2 cut(s)	301, 1341
BstBAI	YACGTR	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	241, 286
BstDEI	CTNAG	5 cut(s)	98, 1083, 1203, 1323, 1443
BstF5I	GGATG	1 cut(s)	949
BstFNI	CGCG	1 cut(s)	847
BstKTI	GATC	2 cut(s)	162, 530
BstMAI	GTCTC	3 cut(s)	465, 851, 1449
BstMBI	GATC	2 cut(s)	159, 527
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 236
BstNI	CCWGG	1 cut(s)	403
BstSCI	CCNGG	7 cut(s)	401, 592, 920, 1040, 1160, 1280, 1400
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	847
BstV2I	GAAGAC	5 cut(s)	408, 856, 1220, 1340, 1359
BsuI	GTATCC	3 cut(s)	1057, 1177, 1417
BsuRI	GGCC	5 cut(s)	230, 878, 1129, 1369, 1490
BtsCI	GGATG	1 cut(s)	949
BtsIMutI	CAGTG	2 cut(s)	1097, 1217
BveI	ACCTGC	2 cut(s)	66, 433
Cac8I	GCNNGC	2 cut(s)	241, 286
CaiI	CAGNNNCTG	1 cut(s)	362
Cfr13I	GGNCC	9 cut(s)	876, 982, 1102, 1127, 1222, 1247, 1367, 1463, 1488
CseI	GACGC	1 cut(s)	868
Csp6I	GTAC	4 cut(s)	302, 421, 1305, 1342
CviAII	CATG	3 cut(s)	348, 661, 703
CviQI	GTAC	4 cut(s)	302, 421, 1305, 1342
DdeI	CTNAG	5 cut(s)	98, 1083, 1203, 1323, 1443
DpnI	GATC	2 cut(s)	161, 529
DpnII	GATC	2 cut(s)	159, 527
DraI	TTTAAA	1 cut(s)	792
Eam1104I	CTCTTC	1 cut(s)	1447
EarI	CTCTTC	1 cut(s)	1447
EciI	GGCGGA	1 cut(s)	170
Eco47I	GGWCC	5 cut(s)	982, 1102, 1222, 1247, 1463
Eco57I	CTGAAG	1 cut(s)	855
Eco88I	CYCGRG	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	401
Esp3I	CGTCTC	1 cut(s)	851
FaeI	CATG	3 cut(s)	351, 664, 706
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	4 cut(s)	937, 1057, 1297, 1417
FatI	CATG	3 cut(s)	347, 660, 702
Fnu4HI	GCNGC	2 cut(s)	845, 1370
FokI	GGATG	1 cut(s)	956
Fsp4HI	GCNGC	2 cut(s)	845, 1370
FspBI	CTAG	6 cut(s)	867, 1004, 1124, 1244, 1364, 1485
GluI	GCNGC	2 cut(s)	845, 1370
GsuI	CTGGAG	5 cut(s)	479, 912, 1032, 1272, 1392
HaeIII	GGCC	5 cut(s)	230, 878, 1129, 1369, 1490
HapII	CCGG	9 cut(s)	593, 921, 1041, 1130, 1161, 1250, 1281, 1401, 1491
HgaI	GACGC	1 cut(s)	868
Hin1I	GRCGYC	1 cut(s)	860
Hin1II	CATG	3 cut(s)	351, 664, 706
HindIII	AAGCTT	1 cut(s)	837
HpaII	CCGG	9 cut(s)	593, 921, 1041, 1130, 1161, 1250, 1281, 1401, 1491
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	5 cut(s)	239, 304, 423, 658, 1038
Hpy188I	TCNGA	3 cut(s)	164, 294, 678
Hpy188III	TCNNGA	7 cut(s)	83, 742, 929, 1049, 1169, 1289, 1409
Hpy8I	GTNNAC	5 cut(s)	239, 304, 423, 658, 1038
Hpy99I	CGWCG	1 cut(s)	800
HpyAV	CCTTC	8 cut(s)	70, 136, 220, 254, 725, 751, 873, 1087
HpyCH4IV	ACGT	2 cut(s)	377, 720
HpyCH4V	TGCA	3 cut(s)	239, 254, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 236
HpyF3I	CTNAG	5 cut(s)	98, 1083, 1203, 1323, 1443
HpySE526I	ACGT	2 cut(s)	377, 720
Hsp92I	GRCGYC	1 cut(s)	860
Hsp92II	CATG	3 cut(s)	351, 664, 706
KpnI	GGTACC	1 cut(s)	1308
Kzo9I	GATC	2 cut(s)	159, 527
LmnI	GCTCC	1 cut(s)	581
LweI	GCATC	2 cut(s)	766, 934
MaeI	CTAG	6 cut(s)	867, 1004, 1124, 1244, 1364, 1485
MaeII	ACGT	2 cut(s)	377, 720
MalI	GATC	2 cut(s)	161, 529
MboI	GATC	2 cut(s)	159, 527
MhlI	GDGCHC	2 cut(s)	241, 432
MluCI	AATT	8 cut(s)	272, 484, 787, 800, 949, 1069, 1189, 1429
MlyI	GAGTC	7 cut(s)	544, 919, 1039, 1174, 1279, 1330, 1399
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	5 cut(s)	168, 624, 640, 916, 1080
MseI	TTAA	4 cut(s)	12, 686, 791, 963
MspCI	CTTAAG	1 cut(s)	685
MspI	CCGG	9 cut(s)	593, 921, 1041, 1130, 1161, 1250, 1281, 1401, 1491
MspR9I	CCNGG	7 cut(s)	403, 594, 922, 1042, 1162, 1282, 1402
MvaI	CCWGG	1 cut(s)	403
MvnI	CGCG	1 cut(s)	847
MwoI	GCNNNNNNNGC	2 cut(s)	227, 236
NciI	CCSGG	6 cut(s)	594, 922, 1042, 1162, 1282, 1402
NdeII	GATC	2 cut(s)	159, 527
NlaIII	CATG	3 cut(s)	351, 664, 706
NlaIV	GGNNCC	5 cut(s)	984, 1104, 1224, 1306, 1465
PcsI	WCGNNNNNNNCGW	1 cut(s)	726
PfeI	GAWTC	3 cut(s)	295, 344, 806
PkrI	GCNGC	2 cut(s)	846, 1371
PleI	GAGTC	7 cut(s)	544, 919, 1039, 1173, 1279, 1330, 1399
PpsI	GAGTC	7 cut(s)	544, 919, 1039, 1173, 1279, 1330, 1399
Ppu21I	YACGTR	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	5 cut(s)	984, 1104, 1224, 1306, 1465
PspPI	GGNCC	9 cut(s)	876, 982, 1102, 1127, 1222, 1247, 1367, 1463, 1488
PstI	CTGCAG	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	362
RsaI	GTAC	4 cut(s)	303, 422, 1306, 1343
RsaNI	GTAC	4 cut(s)	302, 421, 1305, 1342
SaqAI	TTAA	4 cut(s)	12, 686, 791, 963
SatI	GCNGC	2 cut(s)	845, 1370
Sau3AI	GATC	2 cut(s)	159, 527
Sau96I	GGNCC	9 cut(s)	876, 982, 1102, 1127, 1222, 1247, 1367, 1463, 1488
SchI	GAGTC	7 cut(s)	544, 919, 1039, 1174, 1279, 1330, 1399
ScrFI	CCNGG	7 cut(s)	403, 594, 922, 1042, 1162, 1282, 1402
SduI	GDGCHC	2 cut(s)	241, 432
SfaNI	GCATC	2 cut(s)	766, 934
SfcI	CTRYAG	1 cut(s)	410
SinI	GGWCC	5 cut(s)	982, 1102, 1222, 1247, 1463
SmlI	CTYRAG	4 cut(s)	170, 571, 685, 1175
SmoI	CTYRAG	4 cut(s)	170, 571, 685, 1175
Sse9I	AATT	8 cut(s)	272, 484, 787, 800, 949, 1069, 1189, 1429
SsiI	CCGC	4 cut(s)	155, 845, 900, 1370
SspI	AATATT	1 cut(s)	825
SspMI	CTAG	6 cut(s)	867, 1004, 1124, 1244, 1364, 1485
StyD4I	CCNGG	7 cut(s)	401, 592, 920, 1040, 1160, 1280, 1400
TaiI	ACGT	2 cut(s)	380, 723
TaqI	TCGA	1 cut(s)	1394
TasI	AATT	8 cut(s)	272, 484, 787, 800, 949, 1069, 1189, 1429
TatI	WGTACW	2 cut(s)	301, 1341
TauI	GCSGC	2 cut(s)	847, 1372
TfiI	GAWTC	3 cut(s)	295, 344, 806
Tru1I	TTAA	4 cut(s)	12, 686, 791, 963
Tru9I	TTAA	4 cut(s)	12, 686, 791, 963
TscAI	CASTG	2 cut(s)	1104, 1224
TspDTI	ATGAA	4 cut(s)	213, 294, 336, 719
TspRI	CASTG	2 cut(s)	1104, 1224
Vha464I	CTTAAG	1 cut(s)	685
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	5 cut(s)	982, 1102, 1222, 1247, 1463
XapI	RAATTY	3 cut(s)	484, 787, 800
XspI	CTAG	6 cut(s)	867, 1004, 1124, 1244, 1364, 1485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.