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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37370 AT2G37370 AT2G37370 AT2G37370 |
| fragaria_vesca | FvH4_6g14710 |
| malus_domestica | MD04G1116900.v1.1 MD04G1117000.v1.1 MD12G1132600.v1.1 |
| prunus_persica | Prupe.6G246700_v2.0.a1 Prupe.6G246700_v2.0.a1 |
| pyrus_communis | pycom04g10680 pycom12g12840 |
| rosa_chinensis | RchiOBHm_Chr3g0467931 |
| rosa_laevigata | RLG00000024467 |
| rosa_multiflora | Rmu_sc0001793.1_g000053 |
| rosa_roxburghii | Rroxscaffold_6G00413300 |
| rosa_rugosa | Rorug03G0090600 |
| rosa_samantha | Rh3AG139000 Rh3BG160600 Rh3CG160500 Rh3DG161100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 92 |
| AccB1I | GGYRCC | 1 cut(s) | 122 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1910 |
| AccII | CGCG | 1 cut(s) | 83 |
| AciI | CCGC | 7 cut(s) | 20, 64, 83, 145, 244, 1575, 1937 |
| AclWI | GGATC | 2 cut(s) | 819, 1210 |
| AcsI | RAATTY | 5 cut(s) | 160, 763, 786, 1462, 1475 |
| AcuI | CTGAAG | 1 cut(s) | 675 |
| AcyI | GRCGYC | 1 cut(s) | 1535 |
| AfaI | GTAC | 3 cut(s) | 72, 549, 1176 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 34, 1694, 1823, 1910 |
| AflII | CTTAAG | 1 cut(s) | 1360 |
| AjnI | CCWGG | 3 cut(s) | 27, 369, 800 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 818, 850, 1745, 1777 |
| AluBI | AGCT | 9 cut(s) | 238, 443, 859, 926, 986, 992, 1514, 1681, 1995 |
| AluI | AGCT | 9 cut(s) | 238, 443, 859, 926, 986, 992, 1514, 1681, 1995 |
| Alw21I | GWGCWC | 1 cut(s) | 1114 |
| Alw26I | GTCTC | 6 cut(s) | 533, 1526, 1572, 1646, 1753, 1844 |
| Alw44I | GTGCAC | 1 cut(s) | 1110 |
| AlwI | GGATC | 2 cut(s) | 819, 1210 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 241 |
| Ama87I | CYCGRG | 1 cut(s) | 854 |
| AoxI | GGCC | 4 cut(s) | 45, 1551, 1685, 1830 |
| ApaLI | GTGCAC | 1 cut(s) | 1110 |
| ApeKI | GCWGC | 5 cut(s) | 238, 241, 567, 859, 1025 |
| ApoI | RAATTY | 5 cut(s) | 160, 763, 786, 1462, 1475 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 231 |
| AspLEI | GCGC | 2 cut(s) | 778, 936 |
| AspS9I | GGNCC | 5 cut(s) | 45, 314, 1551, 1660, 1685 |
| AsuC2I | CCSGG | 2 cut(s) | 1597, 1720 |
| AsuHPI | GGTGA | 6 cut(s) | 34, 52, 410, 843, 1096, 1509 |
| AvaI | CYCGRG | 1 cut(s) | 854 |
| AvaII | GGWCC | 2 cut(s) | 314, 1660 |
| BaeGI | GKGCMC | 1 cut(s) | 1114 |
| BanI | GGYRCC | 1 cut(s) | 122 |
| BanII | GRGCYC | 1 cut(s) | 525 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 486, 518 |
| BbsI | GAAGAC | 2 cut(s) | 327, 1531 |
| Bbv12I | GWGCWC | 1 cut(s) | 1114 |
| BbvI | GCAGC | 5 cut(s) | 225, 228, 579, 846, 1037 |
| BccI | CCATC | 3 cut(s) | 685, 1274, 1463 |
| BceAI | ACGGC | 2 cut(s) | 98, 1088 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 97, 131 |
| BciT130I | CCWGG | 3 cut(s) | 29, 371, 802 |
| BciVI | GTATCC | 1 cut(s) | 1366 |
| BclI | TGATCA | 1 cut(s) | 1426 |
| BcnI | CCSGG | 2 cut(s) | 1597, 1720 |
| BcoDI | GTCTC | 6 cut(s) | 533, 1526, 1572, 1646, 1753, 1844 |
| BfaI | CTAG | 6 cut(s) | 1542, 1682, 1784, 1811, 1856, 1992 |
| BfmI | CTRYAG | 2 cut(s) | 661, 1898 |
| BfrI | CTTAAG | 1 cut(s) | 1360 |
| BfuI | GTATCC | 1 cut(s) | 1366 |
| BglII | AGATCT | 1 cut(s) | 634 |
| BisI | GCNGC | 5 cut(s) | 239, 242, 568, 860, 1026 |
| BlsI | GCNGC | 5 cut(s) | 240, 243, 569, 861, 1027 |
| Bme1390I | CCNGG | 5 cut(s) | 29, 371, 802, 1597, 1720 |
| Bme18I | GGWCC | 2 cut(s) | 314, 1660 |
| BmeT110I | CYCGRG | 1 cut(s) | 854 |
| BmgT120I | GGNCC | 5 cut(s) | 45, 314, 1551, 1660, 1685 |
| BmiI | GGNNCC | 5 cut(s) | 46, 124, 315, 316, 1662 |
| BmrFI | CCNGG | 5 cut(s) | 29, 371, 802, 1597, 1720 |
| BmsI | GCATC | 5 cut(s) | 382, 640, 763, 1227, 1441 |
| BpiI | GAAGAC | 2 cut(s) | 327, 1531 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1047, 1079, 1523, 1555 |
| BpmI | CTGGAG | 2 cut(s) | 1587, 1710 |
| BpuEI | CTTGAG | 3 cut(s) | 585, 1064, 1231 |
| BpuMI | CCSGG | 2 cut(s) | 1597, 1720 |
| BsaAI | YACGTR | 1 cut(s) | 382 |
| BsaHI | GRCGYC | 1 cut(s) | 1535 |
| BsaJI | CCNNGG | 3 cut(s) | 369, 1197, 1304 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 120, 150, 800, 830, 1585, 1615, 1708, 1738 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 34, 1694, 1823, 1910 |
| Bse118I | RCCGGY | 2 cut(s) | 104, 119 |
| Bse1I | ACTGG | 5 cut(s) | 1026, 1273, 1554, 1662, 1893 |
| Bse3DI | GCAATG | 2 cut(s) | 115, 847 |
| BseBI | CCWGG | 3 cut(s) | 29, 371, 802 |
| BseDI | CCNNGG | 3 cut(s) | 369, 1197, 1304 |
| BseGI | GGATG | 3 cut(s) | 1624, 1747, 1945 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 34, 1694, 1823, 1910 |
| BseMI | GCAATG | 2 cut(s) | 115, 847 |
| BseMII | CTCAG | 5 cut(s) | 701, 726, 985, 1839, 1947 |
| BseNI | ACTGG | 5 cut(s) | 1026, 1273, 1554, 1662, 1893 |
| BseRI | GAGGAG | 2 cut(s) | 122, 125 |
| BseSI | GKGCMC | 1 cut(s) | 1114 |
| BseXI | GCAGC | 5 cut(s) | 225, 228, 579, 846, 1037 |
| Bsh1236I | CGCG | 1 cut(s) | 83 |
| Bsh1285I | CGRYCG | 1 cut(s) | 155 |
| BshFI | GGCC | 4 cut(s) | 47, 1553, 1687, 1832 |
| BshNI | GGYRCC | 1 cut(s) | 122 |
| BsiEI | CGRYCG | 1 cut(s) | 155 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1114 |
| BsiHKCI | CYCGRG | 1 cut(s) | 854 |
| BsiSI | CCGG | 5 cut(s) | 105, 120, 1596, 1688, 1719 |
| BsiWI | CGTACG | 1 cut(s) | 70 |
| BslFI | GGGAC | 4 cut(s) | 300, 860, 1612, 1735 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 34, 1694, 1823, 1910 |
| BsmAI | GTCTC | 6 cut(s) | 533, 1526, 1572, 1646, 1753, 1844 |
| BsmBI | CGTCTC | 1 cut(s) | 1526 |
| BsmFI | GGGAC | 4 cut(s) | 300, 860, 1612, 1735 |
| BsmI | GAATGC | 3 cut(s) | 147, 862, 1105 |
| BsnI | GGCC | 4 cut(s) | 47, 1553, 1687, 1832 |
| BsoBI | CYCGRG | 1 cut(s) | 854 |
| Bsp1286I | GDGCHC | 2 cut(s) | 525, 1114 |
| Bsp1407I | TGTACA | 1 cut(s) | 1174 |
| Bsp143I | GATC | 5 cut(s) | 634, 811, 1032, 1202, 1426 |
| BspACI | CCGC | 7 cut(s) | 20, 64, 83, 145, 244, 1575, 1937 |
| BspANI | GGCC | 4 cut(s) | 47, 1553, 1687, 1832 |
| BspCNI | CTCAG | 5 cut(s) | 702, 727, 984, 1840, 1946 |
| BspFNI | CGCG | 1 cut(s) | 83 |
| BspLI | GGNNCC | 5 cut(s) | 46, 124, 315, 316, 1662 |
| BspMAI | CTGCAG | 1 cut(s) | 665 |
| BspPI | GGATC | 2 cut(s) | 819, 1210 |
| BspT107I | GGYRCC | 1 cut(s) | 122 |
| BspTI | CTTAAG | 1 cut(s) | 1360 |
| BsrDI | GCAATG | 2 cut(s) | 115, 847 |
| BsrFI | RCCGGY | 2 cut(s) | 104, 119 |
| BsrGI | TGTACA | 1 cut(s) | 1174 |
| BsrI | ACTGG | 5 cut(s) | 1026, 1273, 1554, 1662, 1893 |
| BssAI | RCCGGY | 2 cut(s) | 104, 119 |
| BssECI | CCNNGG | 3 cut(s) | 369, 1197, 1304 |
| BssMI | GATC | 5 cut(s) | 634, 811, 1032, 1202, 1426 |
| BssNI | GRCGYC | 1 cut(s) | 1535 |
| BssT1I | CCWWGG | 2 cut(s) | 1197, 1304 |
| Bst2UI | CCWGG | 3 cut(s) | 29, 371, 802 |
| Bst4CI | ACNGT | 2 cut(s) | 70, 91 |
| Bst6I | CTCTTC | 2 cut(s) | 1314, 1791 |
| BstACI | GRCGYC | 1 cut(s) | 1535 |
| BstAFI | CTTAAG | 1 cut(s) | 1360 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 638 |
| BstAUI | TGTACA | 1 cut(s) | 1174 |
| BstBAI | YACGTR | 1 cut(s) | 382 |
| BstC8I | GCNNGC | 4 cut(s) | 106, 661, 1114, 1159 |
| BstDEI | CTNAG | 6 cut(s) | 710, 735, 971, 1644, 1848, 1933 |
| BstF5I | GGATG | 3 cut(s) | 1624, 1747, 1945 |
| BstFNI | CGCG | 1 cut(s) | 83 |
| BstHHI | GCGC | 2 cut(s) | 778, 936 |
| BstKTI | GATC | 5 cut(s) | 637, 814, 1035, 1205, 1429 |
| BstMAI | GTCTC | 6 cut(s) | 533, 1526, 1572, 1646, 1753, 1844 |
| BstMBI | GATC | 5 cut(s) | 634, 811, 1032, 1202, 1426 |
| BstMCI | CGRYCG | 1 cut(s) | 155 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 38, 110, 605, 638, 1109 |
| BstNI | CCWGG | 3 cut(s) | 29, 371, 802 |
| BstSCI | CCNGG | 5 cut(s) | 27, 369, 800, 1595, 1718 |
| BstSFI | CTRYAG | 2 cut(s) | 661, 1898 |
| BstSLI | GKGCMC | 1 cut(s) | 1114 |
| BstSNI | TACGTA | 1 cut(s) | 382 |
| BstUI | CGCG | 1 cut(s) | 83 |
| BstV1I | GCAGC | 5 cut(s) | 225, 228, 579, 846, 1037 |
| BstV2I | GAAGAC | 2 cut(s) | 327, 1531 |
| BstX2I | RGATCY | 3 cut(s) | 634, 811, 1202 |
| BstYI | RGATCY | 3 cut(s) | 634, 811, 1202 |
| BsuI | GTATCC | 1 cut(s) | 1366 |
| BsuRI | GGCC | 4 cut(s) | 47, 1553, 1687, 1832 |
| BtsCI | GGATG | 3 cut(s) | 1624, 1747, 1945 |
| BtsI | GCAGTG | 2 cut(s) | 39, 180 |
| BtsIMutI | CAGTG | 5 cut(s) | 39, 87, 180, 1655, 1845 |
| Cac8I | GCNNGC | 4 cut(s) | 106, 661, 1114, 1159 |
| CaiI | CAGNNNCTG | 1 cut(s) | 241 |
| CfoI | GCGC | 2 cut(s) | 778, 936 |
| Cfr10I | RCCGGY | 2 cut(s) | 104, 119 |
| Cfr13I | GGNCC | 5 cut(s) | 45, 314, 1551, 1660, 1685 |
| CseI | GACGC | 1 cut(s) | 1543 |
| Csp6I | GTAC | 3 cut(s) | 71, 548, 1175 |
| CviAII | CATG | 4 cut(s) | 466, 1336, 1378, 1789 |
| CviQI | GTAC | 3 cut(s) | 71, 548, 1175 |
| DdeI | CTNAG | 6 cut(s) | 710, 735, 971, 1644, 1848, 1933 |
| DpnI | GATC | 5 cut(s) | 636, 813, 1034, 1204, 1428 |
| DpnII | GATC | 5 cut(s) | 634, 811, 1032, 1202, 1426 |
| DraI | TTTAAA | 1 cut(s) | 768 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 92 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 92 |
| Eam1104I | CTCTTC | 2 cut(s) | 1314, 1791 |
| EarI | CTCTTC | 2 cut(s) | 1314, 1791 |
| Eco105I | TACGTA | 1 cut(s) | 382 |
| Eco130I | CCWWGG | 2 cut(s) | 1197, 1304 |
| Eco24I | GRGCYC | 1 cut(s) | 525 |
| Eco47I | GGWCC | 2 cut(s) | 314, 1660 |
| Eco57I | CTGAAG | 1 cut(s) | 675 |
| Eco88I | CYCGRG | 1 cut(s) | 854 |
| EcoO109I | RGGNCCY | 1 cut(s) | 314 |
| EcoRII | CCWGG | 3 cut(s) | 27, 369, 800 |
| EcoT14I | CCWWGG | 2 cut(s) | 1197, 1304 |
| EcoT38I | GRGCYC | 1 cut(s) | 525 |
| ErhI | CCWWGG | 2 cut(s) | 1197, 1304 |
| Esp3I | CGTCTC | 1 cut(s) | 1526 |
| FaeI | CATG | 4 cut(s) | 469, 1339, 1381, 1792 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 312, 344, 762, 794, 1181, 1213 |
| FaqI | GGGAC | 4 cut(s) | 300, 860, 1612, 1735 |
| FatI | CATG | 4 cut(s) | 465, 1335, 1377, 1788 |
| FauI | CCCGC | 1 cut(s) | 71 |
| FbaI | TGATCA | 1 cut(s) | 1426 |
| Fnu4HI | GCNGC | 5 cut(s) | 239, 242, 568, 860, 1026 |
| FokI | GGATG | 3 cut(s) | 1631, 1754, 1952 |
| FriOI | GRGCYC | 1 cut(s) | 525 |
| Fsp4HI | GCNGC | 5 cut(s) | 239, 242, 568, 860, 1026 |
| FspBI | CTAG | 6 cut(s) | 1542, 1682, 1784, 1811, 1856, 1992 |
| GlaI | GCGC | 2 cut(s) | 777, 935 |
| GluI | GCNGC | 5 cut(s) | 239, 242, 568, 860, 1026 |
| GsuI | CTGGAG | 2 cut(s) | 1587, 1710 |
| HaeIII | GGCC | 4 cut(s) | 47, 1553, 1687, 1832 |
| HapII | CCGG | 5 cut(s) | 105, 120, 1596, 1688, 1719 |
| HgaI | GACGC | 1 cut(s) | 1543 |
| HhaI | GCGC | 2 cut(s) | 778, 936 |
| Hin1I | GRCGYC | 1 cut(s) | 1535 |
| Hin1II | CATG | 4 cut(s) | 469, 1339, 1381, 1792 |
| Hin6I | GCGC | 2 cut(s) | 776, 934 |
| HinP1I | GCGC | 2 cut(s) | 776, 934 |
| HincII | GTYRAC | 1 cut(s) | 1713 |
| HindII | GTYRAC | 1 cut(s) | 1713 |
| HindIII | AAGCTT | 1 cut(s) | 1512 |
| HpaII | CCGG | 5 cut(s) | 105, 120, 1596, 1688, 1719 |
| HphI | GGTGA | 6 cut(s) | 34, 52, 410, 843, 1096, 1509 |
| Hpy166II | GTNNAC | 7 cut(s) | 25, 285, 345, 1112, 1177, 1333, 1713 |
| Hpy8I | GTNNAC | 7 cut(s) | 25, 285, 345, 1112, 1177, 1333, 1713 |
| Hpy99I | CGWCG | 1 cut(s) | 119 |
| HpyCH4III | ACNGT | 2 cut(s) | 70, 91 |
| HpyCH4IV | ACGT | 2 cut(s) | 381, 1395 |
| HpyCH4V | TGCA | 8 cut(s) | 260, 608, 614, 641, 663, 862, 1112, 1127 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 38, 110, 605, 638, 1109 |
| HpyF3I | CTNAG | 6 cut(s) | 710, 735, 971, 1644, 1848, 1933 |
| HpySE526I | ACGT | 2 cut(s) | 381, 1395 |
| Hsp92I | GRCGYC | 1 cut(s) | 1535 |
| Hsp92II | CATG | 4 cut(s) | 469, 1339, 1381, 1792 |
| HspAI | GCGC | 2 cut(s) | 776, 934 |
| KflI | GGGWCCC | 1 cut(s) | 314 |
| KroI | GCCGGC | 1 cut(s) | 104 |
| KroNI | GCCGGC | 1 cut(s) | 106 |
| Ksp22I | TGATCA | 1 cut(s) | 1426 |
| Kzo9I | GATC | 5 cut(s) | 634, 811, 1032, 1202, 1426 |
| LmnI | GCTCC | 2 cut(s) | 594, 1256 |
| Lsp1109I | GCAGC | 5 cut(s) | 225, 228, 579, 846, 1037 |
| LweI | GCATC | 5 cut(s) | 382, 640, 763, 1227, 1441 |
| MaeI | CTAG | 6 cut(s) | 1542, 1682, 1784, 1811, 1856, 1992 |
| MaeII | ACGT | 2 cut(s) | 381, 1395 |
| MaeIII | GTNAC | 2 cut(s) | 816, 1298 |
| MalI | GATC | 5 cut(s) | 636, 813, 1034, 1204, 1428 |
| MboI | GATC | 5 cut(s) | 634, 811, 1032, 1202, 1426 |
| MfeI | CAATTG | 1 cut(s) | 609 |
| MflI | RGATCY | 3 cut(s) | 634, 811, 1202 |
| MhlI | GDGCHC | 2 cut(s) | 525, 1114 |
| MlyI | GAGTC | 8 cut(s) | 123, 350, 842, 1219, 1437, 1594, 1717, 1846 |
| MmeI | TCCRAC | 2 cut(s) | 786, 1862 |
| MroNI | GCCGGC | 1 cut(s) | 104 |
| MroXI | GAANNNNTTC | 1 cut(s) | 231 |
| MseI | TTAA | 6 cut(s) | 174, 264, 330, 767, 1361, 1863 |
| MspA1I | CMGCKG | 2 cut(s) | 238, 1937 |
| MspCI | CTTAAG | 1 cut(s) | 1360 |
| MspI | CCGG | 5 cut(s) | 105, 120, 1596, 1688, 1719 |
| MspR9I | CCNGG | 5 cut(s) | 29, 371, 802, 1597, 1720 |
| MunI | CAATTG | 1 cut(s) | 609 |
| Mva1269I | GAATGC | 3 cut(s) | 147, 862, 1105 |
| MvaI | CCWGG | 3 cut(s) | 29, 371, 802 |
| MvnI | CGCG | 1 cut(s) | 83 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 38, 110, 605, 638, 1109 |
| NaeI | GCCGGC | 1 cut(s) | 106 |
| NciI | CCSGG | 2 cut(s) | 1597, 1720 |
| NdeII | GATC | 5 cut(s) | 634, 811, 1032, 1202, 1426 |
| NgoMIV | GCCGGC | 1 cut(s) | 104 |
| NlaIII | CATG | 4 cut(s) | 469, 1339, 1381, 1792 |
| NlaIV | GGNNCC | 5 cut(s) | 46, 124, 315, 316, 1662 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1401 |
| PctI | GAATGC | 3 cut(s) | 147, 862, 1105 |
| PdiI | GCCGGC | 1 cut(s) | 106 |
| PdmI | GAANNNNTTC | 1 cut(s) | 231 |
| PfeI | GAWTC | 6 cut(s) | 350, 386, 469, 899, 1168, 1481 |
| Pfl23II | CGTACG | 1 cut(s) | 70 |
| PflFI | GACNNNGTC | 1 cut(s) | 89 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1910 |
| PkrI | GCNGC | 5 cut(s) | 240, 243, 569, 861, 1027 |
| PleI | GAGTC | 8 cut(s) | 123, 349, 842, 1219, 1437, 1594, 1717, 1846 |
| PpsI | GAGTC | 8 cut(s) | 123, 349, 842, 1219, 1437, 1594, 1717, 1846 |
| Ppu21I | YACGTR | 1 cut(s) | 382 |
| PpuMI | RGGWCCY | 1 cut(s) | 314 |
| Psp5II | RGGWCCY | 1 cut(s) | 314 |
| Psp6I | CCWGG | 3 cut(s) | 27, 369, 800 |
| PspGI | CCWGG | 3 cut(s) | 27, 369, 800 |
| PspLI | CGTACG | 1 cut(s) | 70 |
| PspN4I | GGNNCC | 5 cut(s) | 46, 124, 315, 316, 1662 |
| PspPI | GGNCC | 5 cut(s) | 45, 314, 1551, 1660, 1685 |
| PspPPI | RGGWCCY | 1 cut(s) | 314 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 216, 248 |
| PstI | CTGCAG | 1 cut(s) | 665 |
| PstNI | CAGNNNCTG | 1 cut(s) | 241 |
| PsuI | RGATCY | 3 cut(s) | 634, 811, 1202 |
| PsyI | GACNNNGTC | 1 cut(s) | 89 |
| PvuII | CAGCTG | 1 cut(s) | 238 |
| RsaI | GTAC | 3 cut(s) | 72, 549, 1176 |
| RsaNI | GTAC | 3 cut(s) | 71, 548, 1175 |
| SaqAI | TTAA | 6 cut(s) | 174, 264, 330, 767, 1361, 1863 |
| SatI | GCNGC | 5 cut(s) | 239, 242, 568, 860, 1026 |
| Sau3AI | GATC | 5 cut(s) | 634, 811, 1032, 1202, 1426 |
| Sau96I | GGNCC | 5 cut(s) | 45, 314, 1551, 1660, 1685 |
| SchI | GAGTC | 8 cut(s) | 123, 350, 842, 1219, 1437, 1594, 1717, 1846 |
| ScrFI | CCNGG | 5 cut(s) | 29, 371, 802, 1597, 1720 |
| SduI | GDGCHC | 2 cut(s) | 525, 1114 |
| SfaNI | GCATC | 5 cut(s) | 382, 640, 763, 1227, 1441 |
| SfcI | CTRYAG | 2 cut(s) | 661, 1898 |
| SgrAI | CRCCGGYG | 1 cut(s) | 119 |
| SinI | GGWCC | 2 cut(s) | 314, 1660 |
| SmlI | CTYRAG | 4 cut(s) | 600, 1043, 1246, 1360 |
| SmoI | CTYRAG | 4 cut(s) | 600, 1043, 1246, 1360 |
| SnaBI | TACGTA | 1 cut(s) | 382 |
| SsiI | CCGC | 7 cut(s) | 20, 64, 83, 145, 244, 1575, 1937 |
| SspI | AATATT | 2 cut(s) | 891, 1500 |
| SspMI | CTAG | 6 cut(s) | 1542, 1682, 1784, 1811, 1856, 1992 |
| StyD4I | CCNGG | 5 cut(s) | 27, 369, 800, 1595, 1718 |
| StyI | CCWWGG | 2 cut(s) | 1197, 1304 |
| TaaI | ACNGT | 2 cut(s) | 70, 91 |
| TaiI | ACGT | 2 cut(s) | 384, 1398 |
| TaqI | TCGA | 2 cut(s) | 151, 1971 |
| TaqII | GACCGA | 1 cut(s) | 169 |
| TatI | WGTACW | 2 cut(s) | 547, 1174 |
| TfiI | GAWTC | 6 cut(s) | 350, 386, 469, 899, 1168, 1481 |
| Tru1I | TTAA | 6 cut(s) | 174, 264, 330, 767, 1361, 1863 |
| Tru9I | TTAA | 6 cut(s) | 174, 264, 330, 767, 1361, 1863 |
| TscAI | CASTG | 5 cut(s) | 39, 94, 187, 1662, 1852 |
| TseI | GCWGC | 5 cut(s) | 238, 241, 567, 859, 1025 |
| TspRI | CASTG | 5 cut(s) | 39, 94, 187, 1662, 1852 |
| Tth111I | GACNNNGTC | 1 cut(s) | 89 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1910 |
| Vha464I | CTTAAG | 1 cut(s) | 1360 |
| VneI | GTGCAC | 1 cut(s) | 1110 |
| VpaK11BI | GGWCC | 2 cut(s) | 314, 1660 |
| XapI | RAATTY | 5 cut(s) | 160, 763, 786, 1462, 1475 |
| XbaI | TCTAGA | 1 cut(s) | 1855 |
| XmnI | GAANNNNTTC | 1 cut(s) | 231 |
| XspI | CTAG | 6 cut(s) | 1542, 1682, 1784, 1811, 1856, 1992 |