Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006552

Physical Location & Seq

Genomic Coordinates Forward (+)

15694038 .. 15695999

Gene Structure 1962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAGGGACGAATGTTTTGCGCTTCGCAAGCATCGACAGCCATATGTTCAAGCATGGACCACGTTCACAAATCAACCACCACCGACGAAGATGAACGAAACAGCGGCCGAGCTATAGACCGCCACAACCCGATCATTAAAGATGGCCGAAGATCATTCGCTGACGACTTCATTAAACTACCAACTTCCGCAGAAGACGGAGAGATGAGTAACAAAAAGCTAGAGATCTATAAAGGCAGGAGAAGCATCACTGGCAGGAGAAGCACGGGCGGTGGCGGTGGAGGCGGAGCAGCGGCGTTGTTGAAGCTGATCACTAATGACATTGGCTTAGCAAGGAAGAGTTTCAGCTGTGTTGCGAGACCCGCATGTGACTTAATCAAAACCCCTGTGGGTTCTACAAGGTATCTTTTGGGATCGGACCCGGATTCTATTACGGGTTCTGTGGATCAGGATCCGGCTAAGACGGTAGAAGCTGAAGCTCCTGCTGGTGAAGACAAAACGTTGACAGAGAAGAAGACAACTTGTGGTGATACAGACCAGCAGGTCGTTGTTCTTAAAGTGTCTCTCCACTGCAGAGGCTGTGAAGGCAAAGTTAGGAAACACTTGGCCAGAATGCAAGGTGTAACATCTTTCAACATAGATTTTGCTGCAAAGAAAGTGACTGTGACTGGAGATATCACTCCCTTGGAAATATTGGATAGCATTTCAAAGGTTAAAAATGCCCAATTTTGGACAAATCCAACAATCCCAAAGCCGAACGTGGAAACACAAAATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010015 GO:0010232 GO:0010233 GO:0019725 GO:0022414 GO:0022622 GO:0030001 GO:0030003 GO:0032501 GO:0032502 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055076 GO:0055078 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0098771 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

259

Amino Acids

27.87

Weight (kDa)

8.92

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	185 - 237	8e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37390 AT2G37390 AT3G53530 AT3G53530
fragaria_vesca	FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630
malus_domestica	MD04G1118300.v1.1 MD12G1133800.v1.1
prunus_persica	Prupe.6G247400_v2.0.a1 Prupe.6G247400_v2.0.a1
pyrus_communis	pycom04g10790 pycom12g12910
rosa_chinensis	RchiOBHm_Chr3g0467751
rosa_laevigata	RLG00000024476
rosa_multiflora	Rmu_sc0001793.1_g000025
rosa_roxburghii	Rroxscaffold_6G00413450
rosa_rugosa	Rorug03G0089600
rosa_samantha	Rh3AG138000 Rh3BG159300 Rh3CG159200 Rh3DG159700
rosa_wichuraiana	Rw3G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	532
AciI	CCGC	8 cut(s)	105, 121, 189, 270, 276, 285, 293, 363
AclI	AACGTT	1 cut(s)	500
AclWI	GGATC	4 cut(s)	421, 446, 453, 459
AcoI	YGGCCR	3 cut(s)	106, 145, 606
AcuI	CTGAAG	1 cut(s)	495
AfiI	CCNNNNNNNGG	1 cut(s)	729
AgsI	TTSAA	4 cut(s)	51, 304, 634, 708
AluBI	AGCT	6 cut(s)	113, 220, 307, 348, 473, 479
AluI	AGCT	6 cut(s)	113, 220, 307, 348, 473, 479
Alw26I	GTCTC	2 cut(s)	352, 567
AlwI	GGATC	4 cut(s)	421, 446, 453, 459
AlwNI	CAGNNNCTG	1 cut(s)	579
AoxI	GGCC	3 cut(s)	106, 145, 606
ApeKI	GCWGC	2 cut(s)	290, 647
ArsI	GACNNNNNNTTYG	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	58, 418
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	500, 539
AvaII	GGWCC	2 cut(s)	58, 418
BalI	TGGCCA	1 cut(s)	608
BamHI	GGATCC	1 cut(s)	451
BbsI	GAAGAC	3 cut(s)	201, 498, 521
BbvI	GCAGC	2 cut(s)	302, 634
BccI	CCATC	1 cut(s)	137
BcgI	CGANNNNNNTGC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	2 cut(s)	352, 567
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	2 cut(s)	114, 571
BfuAI	ACCTGC	1 cut(s)	532
BglII	AGATCT	1 cut(s)	225
BisI	GCNGC	4 cut(s)	106, 291, 294, 648
BlpI	GCTNAGC	1 cut(s)	328
BlsI	GCNGC	4 cut(s)	107, 292, 295, 649
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	2 cut(s)	58, 418
BmgT120I	GGNCC	2 cut(s)	58, 418
BmiI	GGNNCC	2 cut(s)	420, 453
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	41, 255
BpiI	GAAGAC	3 cut(s)	201, 498, 521
BpmI	CTGGAG	1 cut(s)	690
Bpu1102I	GCTNAGC	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	1 cut(s)	729
Bse1I	ACTGG	2 cut(s)	256, 673
Bse8I	GATNNNNATC	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	684
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	729
BseNI	ACTGG	2 cut(s)	256, 673
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	302, 634
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	108, 147, 608
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	422, 455
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	729
BsmAI	GTCTC	2 cut(s)	352, 567
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	3 cut(s)	108, 147, 608
Bso31I	GGTCTC	1 cut(s)	352
Bsp143I	GATC	7 cut(s)	132, 152, 225, 309, 413, 445, 451
Bsp1720I	GCTNAGC	1 cut(s)	328
BspACI	CCGC	8 cut(s)	105, 121, 189, 270, 276, 285, 293, 363
BspANI	GGCC	3 cut(s)	108, 147, 608
BspLI	GGNNCC	2 cut(s)	420, 453
BspMAI	CTGCAG	1 cut(s)	575
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	4 cut(s)	421, 446, 453, 459
BspTNI	GGTCTC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	256, 673
BssECI	CCNNGG	1 cut(s)	684
BssMI	GATC	7 cut(s)	132, 152, 225, 309, 413, 445, 451
BssT1I	CCWWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	466, 664
Bst6I	CTCTTC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	328, 459
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	7 cut(s)	135, 155, 228, 312, 416, 448, 454
BstMAI	GTCTC	2 cut(s)	352, 567
BstMBI	GATC	7 cut(s)	132, 152, 225, 309, 413, 445, 451
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	8 cut(s)	29, 38, 243, 252, 261, 282, 362, 585
BstNSI	RCATGY	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	2 cut(s)	114, 571
BstV1I	GCAGC	2 cut(s)	302, 634
BstV2I	GAAGAC	3 cut(s)	201, 498, 521
BstX2I	RGATCY	2 cut(s)	225, 451
BstYI	RGATCY	2 cut(s)	225, 451
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	108, 147, 608
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	2 cut(s)	249, 568
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	579
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	58, 418
CviAII	CATG	2 cut(s)	55, 366
DdeI	CTNAG	2 cut(s)	328, 459
DpnI	GATC	7 cut(s)	134, 154, 227, 311, 415, 447, 453
DpnII	GATC	7 cut(s)	132, 152, 225, 309, 413, 445, 451
DrdI	GACNNNNNNGTC	1 cut(s)	542
DseDI	GACNNNNNNGTC	1 cut(s)	542
EaeI	YGGCCR	3 cut(s)	106, 145, 606
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	300
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	2 cut(s)	58, 418
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	495
EcoRV	GATATC	1 cut(s)	676
EcoT14I	CCWWGG	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	684
FaeI	CATG	2 cut(s)	58, 369
FaiI	YATR	7 cut(s)	44, 46, 56, 116, 231, 367, 638
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	54, 365
FauI	CCCGC	1 cut(s)	370
FauNDI	CATATG	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	106, 291, 294, 648
Fsp4HI	GCNGC	4 cut(s)	106, 291, 294, 648
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	4 cut(s)	106, 291, 294, 648
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	3 cut(s)	108, 147, 608
HapII	CCGG	2 cut(s)	422, 455
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	58, 369
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	2 cut(s)	422, 455
HphI	GGTGA	2 cut(s)	500, 539
Hpy166II	GTNNAC	2 cut(s)	67, 504
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	2 cut(s)	67, 504
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	578
HpyCH4III	ACNGT	2 cut(s)	466, 664
HpyCH4IV	ACGT	3 cut(s)	63, 500, 759
HpyCH4V	TGCA	3 cut(s)	573, 616, 650
HpyF10VI	GCNNNNNNNGC	8 cut(s)	29, 38, 243, 252, 261, 282, 362, 585
HpyF3I	CTNAG	2 cut(s)	328, 459
HpySE526I	ACGT	3 cut(s)	63, 500, 759
Hsp92II	CATG	2 cut(s)	58, 369
HspAI	GCGC	1 cut(s)	21
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	7 cut(s)	132, 152, 225, 309, 413, 445, 451
LmnI	GCTCC	2 cut(s)	287, 484
Lsp1109I	GCAGC	2 cut(s)	302, 634
LweI	GCATC	2 cut(s)	41, 255
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	3 cut(s)	63, 500, 759
MaeIII	GTNAC	5 cut(s)	209, 368, 622, 658, 664
MalI	GATC	7 cut(s)	134, 154, 227, 311, 415, 447, 453
MboI	GATC	7 cut(s)	132, 152, 225, 309, 413, 445, 451
MboII	GAAGA	7 cut(s)	101, 162, 206, 349, 503, 523, 526
MflI	RGATCY	2 cut(s)	225, 451
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	1 cut(s)	725
MluNI	TGGCCA	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	2 cut(s)	275, 569
Mox20I	TGGCCA	1 cut(s)	608
MroXI	GAANNNNTTC	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	5 cut(s)	138, 174, 374, 555, 714
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	3 cut(s)	105, 293, 348
MspI	CCGG	2 cut(s)	422, 455
MspR9I	CCNGG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	618
MwoI	GCNNNNNNNGC	8 cut(s)	29, 38, 243, 252, 261, 282, 362, 585
NciI	CCSGG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	7 cut(s)	132, 152, 225, 309, 413, 445, 451
NlaIII	CATG	2 cut(s)	58, 369
NlaIV	GGNNCC	2 cut(s)	420, 453
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	3 cut(s)	368, 658, 664
NspI	RCATGY	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	4 cut(s)	107, 292, 295, 649
Psp1406I	AACGTT	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	420, 453
PspPI	GGNCC	2 cut(s)	58, 418
PstI	CTGCAG	1 cut(s)	575
PstNI	CAGNNNCTG	1 cut(s)	579
PsuI	RGATCY	2 cut(s)	225, 451
PvuII	CAGCTG	1 cut(s)	348
SaqAI	TTAA	5 cut(s)	138, 174, 374, 555, 714
SatI	GCNGC	4 cut(s)	106, 291, 294, 648
Sau3AI	GATC	7 cut(s)	132, 152, 225, 309, 413, 445, 451
Sau96I	GGNCC	2 cut(s)	58, 418
ScrFI	CCNGG	1 cut(s)	422
SfaNI	GCATC	2 cut(s)	41, 255
SfcI	CTRYAG	2 cut(s)	114, 571
SinI	GGWCC	2 cut(s)	58, 418
Sse9I	AATT	1 cut(s)	725
SsiI	CCGC	8 cut(s)	105, 121, 189, 270, 276, 285, 293, 363
SspI	AATATT	1 cut(s)	693
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	2 cut(s)	466, 664
TaiI	ACGT	3 cut(s)	66, 503, 762
TaqI	TCGA	1 cut(s)	35
TasI	AATT	1 cut(s)	725
TauI	GCSGC	2 cut(s)	108, 296
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	5 cut(s)	138, 174, 374, 555, 714
Tru9I	TTAA	5 cut(s)	138, 174, 374, 555, 714
TscAI	CASTG	2 cut(s)	256, 575
TseFI	GTSAC	3 cut(s)	368, 658, 664
TseI	GCWGC	2 cut(s)	290, 647
Tsp45I	GTSAC	3 cut(s)	368, 658, 664
TspDTI	ATGAA	3 cut(s)	17, 108, 160
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	256, 575
VpaK11BI	GGWCC	2 cut(s)	58, 418
XceI	RCATGY	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.