Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001793.1

Orthogroup ID

OG0006552

Physical Location & Seq

Genomic Coordinates Reverse (-)

89223 .. 91853

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001793.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgaagctgaaaggcatagatatcttctgtgcatcccaagcttcaacagccatatgtttcagtatggatcaagcctcatcctcctcatcagttttccaacttggtggtcgagccatcgatcgccacaatcccattatccaagattcaagaagatcaagcactagtagtactagtactagatttattaatcctccttgctattctcaaccacccatcaatcccaaaacttaccatcaactccagaagagcaagaaaaacttctcatcttcaaagacaagtagtgatcagagcaagaagaagattgtgagcttctcaaaagaaaagtatgagcaaaagaggaagagtacttcttctaacggtaagaaaccgtctgatgataatgttaagaagcactcttcagtcccaagtggaagtgttgttaggaagagctctactgagccagttgatcttatcagtattactcctcctggatcatccagataccttttgagtgacaaggtgttcttcgatgggttatctgattatgatccggtttcagcattggttccagttggagacaaggaaaaccaaaacacagtgatgaataagcaagaatatgaatctgcttcttcagcaagctcttcctcatctctgtcaaaaccacctcctccttccaaccaggttgtagtgttgagggtgtcactgcactgcaaaggctgtgaaggaaaactgagaaagcatctatcaagaatggaaggagtgacgtctttcaacatagactttgcagcaaagaaggtgactgtaatgggagatgtaaccccagtgagtgtgcttgcaagtgtctcaaaggtgaagaatgctcaccttcaaatcccagaaaccaccgccgcccaccttgaagatctcaactccaggattccagaaccggcggccccatcccctgaaccggccgacaaaccaccgaaccggccaccagaagtagcaaaagtccctctgcccggttcaaagccttcctcaccacctcctgcagccatactcgaccaactgcagcgtctccaccccagaaacccggaaccggaaatttcatcaccggaaccggccaaaattccaccgaacccgccaccagaatcttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010015 GO:0010232 GO:0010233 GO:0019725 GO:0022414 GO:0022622 GO:0030001 GO:0030003 GO:0032501 GO:0032502 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055076 GO:0055078 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0098771 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

371

Amino Acids

40.01

Weight (kDa)

9.48

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37390 AT2G37390 AT3G53530 AT3G53530
fragaria_vesca	FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630
malus_domestica	MD04G1118300.v1.1 MD12G1133800.v1.1
prunus_persica	Prupe.6G247400_v2.0.a1 Prupe.6G247400_v2.0.a1
pyrus_communis	pycom04g10790 pycom12g12910
rosa_chinensis	RchiOBHm_Chr3g0467751
rosa_laevigata	RLG00000024476
rosa_multiflora	Rmu_sc0001793.1_g000025
rosa_roxburghii	Rroxscaffold_6G00413450
rosa_rugosa	Rorug03G0089600
rosa_samantha	Rh3AG138000 Rh3BG159300 Rh3CG159200 Rh3DG159700
rosa_wichuraiana	Rw3G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	746
AciI	CCGC	4 cut(s)	864, 867, 908, 1097
AclWI	GGATC	3 cut(s)	75, 478, 521
AcoI	YGGCCR	3 cut(s)	927, 947, 1077
AcsI	RAATTY	2 cut(s)	1059, 1083
AcuI	CTGAAG	2 cut(s)	381, 594
AcyI	GRCGYC	1 cut(s)	743
AfaI	GTAC	3 cut(s)	169, 175, 346
AfiI	CCNNNNNNNGG	3 cut(s)	925, 977, 1054
AgsI	TTSAA	7 cut(s)	45, 147, 270, 751, 848, 878, 984
AhlI	ACTAGT	2 cut(s)	161, 170
AjnI	CCWGG	3 cut(s)	466, 657, 890
AluBI	AGCT	5 cut(s)	7, 41, 309, 429, 618
AluI	AGCT	5 cut(s)	7, 41, 309, 429, 618
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	3 cut(s)	549, 826, 1037
AlwI	GGATC	3 cut(s)	75, 478, 521
AoxI	GGCC	4 cut(s)	909, 927, 947, 1077
ApeKI	GCWGC	3 cut(s)	764, 1007, 1027
ApoI	RAATTY	2 cut(s)	1059, 1083
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	910
AsuC2I	CCSGG	2 cut(s)	978, 1049
AsuHPI	GGTGA	5 cut(s)	787, 833, 841, 987, 1059
BanII	GRGCYC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	776, 1019, 1039
BccI	CCATC	5 cut(s)	122, 221, 240, 503, 922
BciT130I	CCWGG	3 cut(s)	468, 659, 892
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	2 cut(s)	978, 1049
BcoDI	GTCTC	3 cut(s)	549, 826, 1037
BcuI	ACTAGT	2 cut(s)	161, 170
BfaI	CTAG	3 cut(s)	162, 171, 177
BfmI	CTRYAG	2 cut(s)	1005, 1025
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	5 cut(s)	765, 867, 909, 1008, 1028
BlsI	GCNGC	5 cut(s)	766, 868, 910, 1009, 1029
BmcAI	AGTACT	3 cut(s)	169, 175, 346
Bme1390I	CCNGG	5 cut(s)	468, 659, 892, 978, 1049
BmgT120I	GGNCC	1 cut(s)	910
BmiI	GGNNCC	4 cut(s)	546, 912, 1053, 1074
BmrFI	CCNGG	5 cut(s)	468, 659, 892, 978, 1049
BmrI	ACTGGG	1 cut(s)	794
BmsI	GCATC	2 cut(s)	41, 727
BmuI	ACTGGG	1 cut(s)	794
BpmI	CTGGAG	2 cut(s)	224, 874
BpuMI	CCSGG	2 cut(s)	978, 1049
Bsa29I	ATCGAT	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	743
BsaWI	WCCGGW	3 cut(s)	529, 1054, 1069
Bsc4I	CCNNNNNNNGG	3 cut(s)	925, 977, 1054
Bse118I	RCCGGY	4 cut(s)	904, 925, 945, 1075
Bse1I	ACTGG	3 cut(s)	440, 548, 800
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	3 cut(s)	468, 659, 892
BseCI	ATCGAT	1 cut(s)	117
BseGI	GGATG	4 cut(s)	32, 77, 473, 914
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	3 cut(s)	925, 977, 1054
BseMII	CTCAG	2 cut(s)	426, 701
BseNI	ACTGG	3 cut(s)	440, 548, 800
BseRI	GAGGAG	3 cut(s)	73, 453, 636
BseX3I	CGGCCG	1 cut(s)	927
BseXI	GCAGC	3 cut(s)	776, 1019, 1039
BsgI	GTGCAG	1 cut(s)	668
Bsh1285I	CGRYCG	2 cut(s)	121, 930
BshFI	GGCC	4 cut(s)	911, 929, 949, 1079
BshVI	ATCGAT	1 cut(s)	117
BsiEI	CGRYCG	2 cut(s)	121, 930
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	9 cut(s)	530, 905, 926, 946, 978, 1049, 1055, 1070, 1076
BslFI	GGGAC	2 cut(s)	386, 953
BslI	CCNNNNNNNGG	3 cut(s)	925, 977, 1054
BsmAI	GTCTC	3 cut(s)	549, 826, 1037
BsmBI	CGTCTC	1 cut(s)	1037
BsmFI	GGGAC	2 cut(s)	386, 953
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	4 cut(s)	911, 929, 949, 1079
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	8 cut(s)	67, 118, 152, 283, 445, 470, 526, 880
BspACI	CCGC	4 cut(s)	864, 867, 908, 1097
BspANI	GGCC	4 cut(s)	911, 929, 949, 1079
BspCNI	CTCAG	2 cut(s)	427, 702
BspDI	ATCGAT	1 cut(s)	117
BspLI	GGNNCC	4 cut(s)	546, 912, 1053, 1074
BspMAI	CTGCAG	2 cut(s)	1009, 1029
BspPI	GGATC	3 cut(s)	75, 478, 521
BspQI	GCTCTTC	3 cut(s)	239, 419, 625
BsrFI	RCCGGY	4 cut(s)	904, 925, 945, 1075
BsrI	ACTGG	3 cut(s)	440, 548, 800
BssAI	RCCGGY	4 cut(s)	904, 925, 945, 1075
BssMI	GATC	8 cut(s)	67, 118, 152, 283, 445, 470, 526, 880
BssNI	GRCGYC	1 cut(s)	743
Bst2UI	CCWGG	3 cut(s)	468, 659, 892
Bst4CI	ACNGT	4 cut(s)	359, 369, 577, 781
Bst6I	CTCTTC	5 cut(s)	239, 335, 400, 419, 625
BstACI	GRCGYC	1 cut(s)	743
BstC8I	GCNNGC	2 cut(s)	616, 813
BstDEI	CTNAG	2 cut(s)	435, 710
BstF5I	GGATG	4 cut(s)	32, 77, 473, 914
BstKTI	GATC	8 cut(s)	70, 121, 155, 286, 448, 473, 529, 883
BstMAI	GTCTC	3 cut(s)	549, 826, 1037
BstMBI	GATC	8 cut(s)	67, 118, 152, 283, 445, 470, 526, 880
BstMCI	CGRYCG	2 cut(s)	121, 930
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 611
BstNI	CCWGG	3 cut(s)	468, 659, 892
BstSCI	CCNGG	5 cut(s)	466, 657, 890, 976, 1047
BstSFI	CTRYAG	2 cut(s)	1005, 1025
BstV1I	GCAGC	3 cut(s)	776, 1019, 1039
BstX2I	RGATCY	1 cut(s)	880
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	880
BstZI	CGGCCG	1 cut(s)	927
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	4 cut(s)	911, 929, 949, 1079
BsuTUI	ATCGAT	1 cut(s)	117
BtsCI	GGATG	4 cut(s)	32, 77, 473, 914
BtsI	GCAGTG	2 cut(s)	680, 685
BtsIMutI	CAGTG	4 cut(s)	582, 680, 685, 807
Cac8I	GCNNGC	2 cut(s)	616, 813
Cfr10I	RCCGGY	4 cut(s)	904, 925, 945, 1075
Cfr13I	GGNCC	1 cut(s)	910
ClaI	ATCGAT	1 cut(s)	117
CseI	GACGC	1 cut(s)	1019
CsiI	ACCWGGT	1 cut(s)	657
Csp6I	GTAC	3 cut(s)	168, 174, 345
CviQI	GTAC	3 cut(s)	168, 174, 345
DdeI	CTNAG	2 cut(s)	435, 710
DpnI	GATC	8 cut(s)	69, 120, 154, 285, 447, 472, 528, 882
DpnII	GATC	8 cut(s)	67, 118, 152, 283, 445, 470, 526, 880
EaeI	YGGCCR	3 cut(s)	927, 947, 1077
EagI	CGGCCG	1 cut(s)	927
Eam1104I	CTCTTC	5 cut(s)	239, 335, 400, 419, 625
EarI	CTCTTC	5 cut(s)	239, 335, 400, 419, 625
Ecl136II	GAGCTC	1 cut(s)	429
EclXI	CGGCCG	1 cut(s)	927
Eco24I	GRGCYC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	22
Eco52I	CGGCCG	1 cut(s)	927
Eco53kI	GAGCTC	1 cut(s)	429
Eco57I	CTGAAG	2 cut(s)	381, 594
EcoICRI	GAGCTC	1 cut(s)	429
EcoRII	CCWGG	3 cut(s)	466, 657, 890
EcoRV	GATATC	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	1037
FaiI	YATR	9 cut(s)	17, 53, 55, 65, 327, 525, 597, 755, 1013
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 488, 520
FaqI	GGGAC	2 cut(s)	386, 953
FauI	CCCGC	1 cut(s)	1104
FauNDI	CATATG	1 cut(s)	53
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	5 cut(s)	765, 867, 909, 1008, 1028
FokI	GGATG	4 cut(s)	19, 64, 460, 901
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	5 cut(s)	765, 867, 909, 1008, 1028
FspBI	CTAG	3 cut(s)	162, 171, 177
GluI	GCNGC	5 cut(s)	765, 867, 909, 1008, 1028
GsuI	CTGGAG	2 cut(s)	224, 874
HaeIII	GGCC	4 cut(s)	911, 929, 949, 1079
HapII	CCGG	9 cut(s)	530, 905, 926, 946, 978, 1049, 1055, 1070, 1076
HgaI	GACGC	1 cut(s)	1019
Hin1I	GRCGYC	1 cut(s)	743
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	4 cut(s)	143, 599, 895, 1106
HpaII	CCGG	9 cut(s)	530, 905, 926, 946, 978, 1049, 1055, 1070, 1076
HphI	GGTGA	5 cut(s)	787, 833, 841, 987, 1059
Hpy188I	TCNGA	3 cut(s)	288, 373, 520
Hpy188III	TCNNGA	6 cut(s)	147, 241, 477, 726, 899, 1113
HpyAV	CCTTC	6 cut(s)	660, 695, 728, 766, 854, 999
HpyCH4III	ACNGT	4 cut(s)	359, 369, 577, 781
HpyCH4IV	ACGT	1 cut(s)	743
HpyCH4V	TGCA	7 cut(s)	32, 685, 690, 764, 815, 1007, 1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 611
HpyF3I	CTNAG	2 cut(s)	435, 710
HpySE526I	ACGT	1 cut(s)	743
Hsp92I	GRCGYC	1 cut(s)	743
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	8 cut(s)	67, 118, 152, 283, 445, 470, 526, 880
LguI	GCTCTTC	3 cut(s)	239, 419, 625
Lsp1109I	GCAGC	3 cut(s)	776, 1019, 1039
LweI	GCATC	2 cut(s)	41, 727
MabI	ACCWGGT	1 cut(s)	657
MaeI	CTAG	3 cut(s)	162, 171, 177
MaeII	ACGT	1 cut(s)	743
MaeIII	GTNAC	5 cut(s)	491, 678, 739, 775, 793
MalI	GATC	8 cut(s)	69, 120, 154, 285, 447, 472, 528, 882
MboI	GATC	8 cut(s)	67, 118, 152, 283, 445, 470, 526, 880
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	2 cut(s)	1059, 1083
MmeI	TCCRAC	3 cut(s)	121, 532, 678
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	186, 384
MslI	CAYNNNNRTG	1 cut(s)	578
MspI	CCGG	9 cut(s)	530, 905, 926, 946, 978, 1049, 1055, 1070, 1076
MspR9I	CCNGG	5 cut(s)	468, 659, 892, 978, 1049
Mva1269I	GAATGC	1 cut(s)	841
MvaI	CCWGG	3 cut(s)	468, 659, 892
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 611
NciI	CCSGG	2 cut(s)	978, 1049
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	8 cut(s)	67, 118, 152, 283, 445, 470, 526, 880
NlaIV	GGNNCC	4 cut(s)	546, 912, 1053, 1074
NmuCI	GTSAC	4 cut(s)	491, 678, 739, 775
PciSI	GCTCTTC	3 cut(s)	239, 419, 625
PctI	GAATGC	1 cut(s)	841
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	4 cut(s)	143, 599, 895, 1106
PfoI	TCCNGGA	2 cut(s)	466, 890
PkrI	GCNGC	5 cut(s)	766, 868, 910, 1009, 1029
Ple19I	CGATCG	1 cut(s)	121
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	431
Psp6I	CCWGG	3 cut(s)	466, 657, 890
PspGI	CCWGG	3 cut(s)	466, 657, 890
PspN4I	GGNNCC	4 cut(s)	546, 912, 1053, 1074
PspPI	GGNCC	1 cut(s)	910
PstI	CTGCAG	2 cut(s)	1009, 1029
PsuI	RGATCY	1 cut(s)	880
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	169, 175, 346
RsaNI	GTAC	3 cut(s)	168, 174, 345
RseI	CAYNNNNRTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	431
SapI	GCTCTTC	3 cut(s)	239, 419, 625
SaqAI	TTAA	2 cut(s)	186, 384
SatI	GCNGC	5 cut(s)	765, 867, 909, 1008, 1028
Sau3AI	GATC	8 cut(s)	67, 118, 152, 283, 445, 470, 526, 880
Sau96I	GGNCC	1 cut(s)	910
ScaI	AGTACT	3 cut(s)	169, 175, 346
ScrFI	CCNGG	5 cut(s)	468, 659, 892, 978, 1049
SduI	GDGCHC	1 cut(s)	431
SexAI	ACCWGGT	1 cut(s)	657
SfaNI	GCATC	2 cut(s)	41, 727
SfcI	CTRYAG	2 cut(s)	1005, 1025
SmiMI	CAYNNNNRTG	1 cut(s)	578
SpeI	ACTAGT	2 cut(s)	161, 170
Sse9I	AATT	2 cut(s)	1059, 1083
SsiI	CCGC	4 cut(s)	864, 867, 908, 1097
SspMI	CTAG	3 cut(s)	162, 171, 177
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	5 cut(s)	466, 657, 890, 976, 1047
TaaI	ACNGT	4 cut(s)	359, 369, 577, 781
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	4 cut(s)	109, 117, 507, 1017
TasI	AATT	2 cut(s)	1059, 1083
TatI	WGTACW	3 cut(s)	167, 173, 344
TauI	GCSGC	2 cut(s)	869, 911
TfiI	GAWTC	4 cut(s)	143, 599, 895, 1106
Tru1I	TTAA	2 cut(s)	186, 384
Tru9I	TTAA	2 cut(s)	186, 384
TscAI	CASTG	4 cut(s)	582, 687, 692, 807
TseFI	GTSAC	4 cut(s)	491, 678, 739, 775
TseI	GCWGC	3 cut(s)	764, 1007, 1027
Tsp45I	GTSAC	4 cut(s)	491, 678, 739, 775
TspDTI	ATGAA	4 cut(s)	17, 596, 612, 1053
TspRI	CASTG	4 cut(s)	582, 687, 692, 807
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	2 cut(s)	1059, 1083
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	3 cut(s)	162, 171, 177
ZraI	GACGTC	1 cut(s)	744
ZrmI	AGTACT	3 cut(s)	169, 175, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.