Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006552

Physical Location & Seq

Genomic Coordinates Forward (+)

19845097 .. 19846820

Gene Structure 1724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAAGCCGGTATGTTTTATTGTGCATCGCAAGCATCGACCGCTACGGCTAACGGCGAACGTACCGTCACCGCTCGAGCCATCGACCGTCATAACCCGATTATCAAAGATGGTCGTAGATCTTTCACGGCACCGTGTTCCTCCGGAGACGACTACGTTGCTCCCTACCGTCAGCTTTCGAAAATTACGAGAGTACCCTCCTCCTCCGGCGATGGAAAGAGTGTTCAGGTAGATAAAGGACGGAGAAGCAATTCAGGGTCGTTGATGAAGCTGATTAGCTATGACGTCAGCTTAGCGAGGAAGAGTTTTGGCTGTGTTGTTGCAACACCCAAAACTCCTCCTGGTTCAACTAGGTATCTTCTGGGATCCGACCCTGTTTCTTTAGCCGGGTCTACGGGTCAGGATACGGTTGCAACGGAGGAAAGTGAAGCTTCTGCGCCAAAAAGAGGCTCTTCTGGTCCCGTAGAAGAGAAGAAGAAGTCTTCTGGTTCAGGTTCAGACCAGGTAGTTGTTCTTAGAGTGTCTCTCCACTGTCACTGCAGAGGCTGTCAAGGCAAAGTGAAGAAACATCTATCCAAAATGCAAGGTGTGACATCCTTCAACATAGATTTTGCATCAAAGAAGGTAACTGTGACTGGAGACATCACTCCTTTGGAAGTATTGGGTTGCCTCTCAAAGGTCAAAAATGCCCAATTCTGGACACCACCTCCACCATCAATCCCAAGGGCAAATCCGGAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010015 GO:0010232 GO:0010233 GO:0019725 GO:0022414 GO:0022622 GO:0030001 GO:0030003 GO:0032501 GO:0032502 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055076 GO:0055078 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0098771 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

247

Amino Acids

26.15

Weight (kDa)

9.68

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	179 - 221	1.4e-08	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37390 AT2G37390 AT3G53530 AT3G53530
fragaria_vesca	FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630
malus_domestica	MD04G1118300.v1.1 MD12G1133800.v1.1
prunus_persica	Prupe.6G247400_v2.0.a1 Prupe.6G247400_v2.0.a1
pyrus_communis	pycom04g10790 pycom12g12910
rosa_chinensis	RchiOBHm_Chr3g0467751
rosa_laevigata	RLG00000024476
rosa_multiflora	Rmu_sc0001793.1_g000025
rosa_roxburghii	Rroxscaffold_6G00413450
rosa_rugosa	Rorug03G0089600
rosa_samantha	Rh3AG138000 Rh3BG159300 Rh3CG159200 Rh3DG159700
rosa_wichuraiana	Rw3G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	130
AccBSI	CCGCTC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	392
AccIII	TCCGGA	2 cut(s)	143, 733
AciI	CCGC	2 cut(s)	42, 72
AclWI	GGATC	2 cut(s)	360, 373
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	2 cut(s)	64, 195
AfiI	CCNNNNNNNGG	3 cut(s)	446, 676, 696
AgsI	TTSAA	2 cut(s)	348, 601
AjnI	CCWGG	2 cut(s)	340, 501
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	5 cut(s)	175, 271, 279, 291, 431
AluI	AGCT	5 cut(s)	175, 271, 279, 291, 431
Alw26I	GTCTC	3 cut(s)	141, 528, 633
AlwI	GGATC	2 cut(s)	360, 373
AlwNI	CAGNNNCTG	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	75
Aor13HI	TCCGGA	2 cut(s)	143, 733
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
Asp700I	GAANNNNTTC	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	458
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BamHI	GGATCC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	474
BccI	CCATC	4 cut(s)	89, 104, 206, 721
BceAI	ACGGC	3 cut(s)	63, 70, 144
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	2 cut(s)	342, 503
BciVI	GTATCC	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	3 cut(s)	141, 528, 633
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	538
BfuI	GTATCC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	119
BlpI	GCTNAGC	1 cut(s)	292
Bme1390I	CCNGG	3 cut(s)	342, 388, 503
Bme18I	GGWCC	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	3 cut(s)	132, 367, 460
BmrFI	CCNGG	3 cut(s)	342, 388, 503
BmsI	GCATC	3 cut(s)	35, 44, 623
BpiI	GAAGAC	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	510, 542
BpmI	CTGGAG	1 cut(s)	657
Bpu1102I	GCTNAGC	1 cut(s)	292
Bpu14I	TTCGAA	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	722
BsaWI	WCCGGW	2 cut(s)	143, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 676, 696
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	640
BseAI	TCCGGA	2 cut(s)	143, 733
BseBI	CCWGG	2 cut(s)	342, 503
BseDI	CCNNGG	1 cut(s)	722
BseGI	GGATG	1 cut(s)	593
BseLI	CCNNNNNNNGG	3 cut(s)	446, 676, 696
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	3 cut(s)	190, 193, 327
Bsh1285I	CGRYCG	2 cut(s)	42, 88
BshNI	GGYRCC	1 cut(s)	130
BsiEI	CGRYCG	2 cut(s)	42, 88
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	5 cut(s)	9, 144, 207, 387, 734
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	446, 676, 696
BsmAI	GTCTC	3 cut(s)	141, 528, 633
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	444
BsoBI	CYCGRG	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	179
Bsp13I	TCCGGA	2 cut(s)	143, 733
Bsp143I	GATC	2 cut(s)	119, 365
Bsp1720I	GCTNAGC	1 cut(s)	292
BspACI	CCGC	2 cut(s)	42, 72
BspEI	TCCGGA	2 cut(s)	143, 733
BspLI	GGNNCC	3 cut(s)	132, 367, 460
BspMAI	CTGCAG	1 cut(s)	542
BspPI	GGATC	2 cut(s)	360, 373
BspQI	GCTCTTC	1 cut(s)	457
BspT104I	TTCGAA	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	722
BssMI	GATC	2 cut(s)	119, 365
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	722
Bst2UI	CCWGG	2 cut(s)	342, 503
Bst4CI	ACNGT	7 cut(s)	67, 89, 135, 170, 409, 533, 631
Bst6I	CTCTTC	3 cut(s)	296, 457, 462
BstACI	GRCGYC	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	292, 515
BstENI	CCTNNNNNAGG	1 cut(s)	674
BstF5I	GGATG	1 cut(s)	593
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	2 cut(s)	122, 368
BstMAI	GTCTC	3 cut(s)	141, 528, 633
BstMBI	GATC	2 cut(s)	119, 365
BstMCI	CGRYCG	2 cut(s)	42, 88
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 41, 552
BstNI	CCWGG	2 cut(s)	342, 503
BstSCI	CCNGG	3 cut(s)	340, 386, 501
BstSFI	CTRYAG	1 cut(s)	538
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	119, 365
BstYI	RGATCY	2 cut(s)	119, 365
BsuI	GTATCC	1 cut(s)	397
BtgZI	GCGATG	2 cut(s)	12, 225
BtsCI	GGATG	1 cut(s)	593
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	2 cut(s)	529, 535
Cac8I	GCNNGC	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	546
CfoI	GCGC	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	458
CsiI	ACCWGGT	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	63, 194
CviQI	GTAC	2 cut(s)	63, 194
DdeI	CTNAG	2 cut(s)	292, 515
DpnI	GATC	2 cut(s)	121, 367
DpnII	GATC	2 cut(s)	119, 365
Eam1104I	CTCTTC	3 cut(s)	296, 457, 462
EarI	CTCTTC	3 cut(s)	296, 457, 462
Eco130I	CCWWGG	1 cut(s)	722
Eco47I	GGWCC	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	674
EcoRII	CCWGG	2 cut(s)	340, 501
EcoT14I	CCWWGG	1 cut(s)	722
ErhI	CCWWGG	1 cut(s)	722
Esp3I	CGTCTC	1 cut(s)	141
FaiI	YATR	4 cut(s)	14, 93, 282, 605
FalI	AAGNNNNNCTT	4 cut(s)	415, 447, 436, 468
FaqI	GGGAC	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	392
FokI	GGATG	1 cut(s)	580
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	657
HapII	CCGG	5 cut(s)	9, 144, 207, 387, 734
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HindIII	AAGCTT	1 cut(s)	429
HpaII	CCGG	5 cut(s)	9, 144, 207, 387, 734
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	2 cut(s)	370, 499
Hpy188III	TCNNGA	4 cut(s)	144, 401, 697, 734
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	607, 616
HpyCH4III	ACNGT	7 cut(s)	67, 89, 135, 170, 409, 533, 631
HpyCH4IV	ACGT	3 cut(s)	61, 156, 285
HpyCH4V	TGCA	6 cut(s)	26, 323, 413, 540, 583, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 41, 552
HpyF3I	CTNAG	2 cut(s)	292, 515
HpySE526I	ACGT	3 cut(s)	61, 156, 285
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	1 cut(s)	437
Kpn2I	TCCGGA	2 cut(s)	143, 733
Kzo9I	GATC	2 cut(s)	119, 365
LguI	GCTCTTC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	166
LweI	GCATC	3 cut(s)	35, 44, 623
MabI	ACCWGGT	1 cut(s)	501
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	3 cut(s)	61, 156, 285
MaeIII	GTNAC	5 cut(s)	67, 533, 589, 625, 631
MalI	GATC	2 cut(s)	121, 367
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	2 cut(s)	119, 365
MboII	GAAGA	8 cut(s)	313, 350, 444, 474, 479, 484, 487, 574
MflI	RGATCY	2 cut(s)	119, 365
MluCI	AATT	3 cut(s)	183, 250, 692
MmeI	TCCRAC	1 cut(s)	393
MroI	TCCGGA	2 cut(s)	143, 733
MroXI	GAANNNNTTC	1 cut(s)	250
MspI	CCGG	5 cut(s)	9, 144, 207, 387, 734
MspR9I	CCNGG	3 cut(s)	342, 388, 503
MvaI	CCWGG	2 cut(s)	342, 503
MwoI	GCNNNNNNNGC	3 cut(s)	32, 41, 552
NciI	CCSGG	1 cut(s)	388
NdeII	GATC	2 cut(s)	119, 365
NlaIV	GGNNCC	3 cut(s)	132, 367, 460
NmuCI	GTSAC	4 cut(s)	67, 533, 589, 631
NspV	TTCGAA	1 cut(s)	179
PaeR7I	CTCGAG	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 185
PdmI	GAANNNNTTC	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	340, 501
PspGI	CCWGG	2 cut(s)	340, 501
PspN4I	GGNNCC	3 cut(s)	132, 367, 460
PspPI	GGNCC	1 cut(s)	458
PspXI	VCTCGAGB	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	542
PstNI	CAGNNNCTG	1 cut(s)	546
PsuI	RGATCY	2 cut(s)	119, 365
RsaI	GTAC	2 cut(s)	64, 195
RsaNI	GTAC	2 cut(s)	63, 194
SapI	GCTCTTC	1 cut(s)	457
Sau3AI	GATC	2 cut(s)	119, 365
Sau96I	GGNCC	1 cut(s)	458
ScrFI	CCNGG	3 cut(s)	342, 388, 503
SexAI	ACCWGGT	1 cut(s)	501
SfaNI	GCATC	3 cut(s)	35, 44, 623
SfcI	CTRYAG	1 cut(s)	538
Sfr274I	CTCGAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	179
SinI	GGWCC	1 cut(s)	458
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	183, 250, 692
SsiI	CCGC	2 cut(s)	42, 72
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	3 cut(s)	340, 386, 501
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	7 cut(s)	67, 89, 135, 170, 409, 533, 631
TaiI	ACGT	3 cut(s)	64, 159, 288
TaqI	TCGA	4 cut(s)	38, 76, 84, 179
TasI	AATT	3 cut(s)	183, 250, 692
TscAI	CASTG	2 cut(s)	536, 542
TseFI	GTSAC	4 cut(s)	67, 533, 589, 631
Tsp45I	GTSAC	4 cut(s)	67, 533, 589, 631
TspDTI	ATGAA	2 cut(s)	17, 281
TspGWI	ACGGA	2 cut(s)	256, 431
TspRI	CASTG	2 cut(s)	536, 542
VpaK11BI	GGWCC	1 cut(s)	458
XagI	CCTNNNNNAGG	1 cut(s)	674
XhoI	CTCGAG	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	1 cut(s)	351
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.