Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006552

Physical Location & Seq

Genomic Coordinates Forward (+)

35820406 .. 35822197

Gene Structure 1792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAAGCTGAAAGGCATAGATATCTTCTGTGCATCCCAAGCTTCAACAGCCATATGTTTCAGTATGGATCAAGCCTCATCCTCCTCATCAGTTATCCAACTTGGTGGTCGAGCCATCGATCGCCACAATCCCATTATCCAAGATTCAAGAAGATCAAGCACTAGTAGTACTAGTACAAGATTTATTAATCCTCCTTGCTATTCTCAACCACCCATCAATCCCAAAACTTACCATCAACTCCAGAAGAGCAAGAAAAACTTCTCATCTTCAAAGACAAGCAGTGATCAGAGCAAGAAGAAGATTGTGAGCTTCTCAAAAGAAAAGTATGAGCAAAAGAGGAAGAGTACTTCTTCTAACGGTAAGAAACCGTCTGATGATAATGTTAAGAAGCACTCTTCAGTCCCAAGTGGAAGTGTTGTTAGGAAGAGCTCTGCTGAGCCAGTTGATCTTATCAGTATTACTCCTCCTGGATCATCCAGATACCTTTTGAGTGACAAGGTGTTCTTCGATGGGTTATCTGATTATGATCCGGTTTCAGCATTGGTTCCAGTTGGAGACAAGGAAAACCAAAACACAGTGATGAATAAGCAAGAATATGAATCTGCTTCTTCAGCAAGCTCTTCCTCATCTCTGTCAAAACCACCTCCTCCTTCCAACCAGGTTGTAGTGTTGAGGGTGTCACTGCACTGCAAAGGCTGTGAAGGAAAACTGAGAAAGCATCTATCAAGAATGGAAGGAGTGACATCTTTCAACATAGACTTTGCAGCAAAGAAGGTGACTGTAATGGGAGATGTAACCCCAGTGAGTGTGCTTGCAAGTGTCTCAAAGGTGAAGAATGCTCAGTTTTGGCCAACTGTGTCTGCAACCCCATCTGCATCACCAGCACCTTGTTCTACCAAACTAAAGGCCAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010015 GO:0010232 GO:0010233 GO:0019725 GO:0022414 GO:0022622 GO:0030001 GO:0030003 GO:0032501 GO:0032502 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055076 GO:0055078 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0098771 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

305

Amino Acids

32.89

Weight (kDa)

9.79

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	224 - 276	4.5e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37390 AT2G37390 AT3G53530 AT3G53530
fragaria_vesca	FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630
malus_domestica	MD04G1118300.v1.1 MD12G1133800.v1.1
prunus_persica	Prupe.6G247400_v2.0.a1 Prupe.6G247400_v2.0.a1
pyrus_communis	pycom04g10790 pycom12g12910
rosa_chinensis	RchiOBHm_Chr3g0467751
rosa_laevigata	RLG00000024476
rosa_multiflora	Rmu_sc0001793.1_g000025
rosa_roxburghii	Rroxscaffold_6G00413450
rosa_rugosa	Rorug03G0089600
rosa_samantha	Rh3AG138000 Rh3BG159300 Rh3CG159200 Rh3DG159700
rosa_wichuraiana	Rw3G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	75, 478, 521
AcoI	YGGCCR	1 cut(s)	848
AcuI	CTGAAG	2 cut(s)	381, 594
AfaI	GTAC	3 cut(s)	169, 175, 346
AgsI	TTSAA	4 cut(s)	45, 147, 270, 751
AhlI	ACTAGT	2 cut(s)	161, 170
AjnI	CCWGG	2 cut(s)	466, 657
AluBI	AGCT	5 cut(s)	7, 41, 309, 429, 618
AluI	AGCT	5 cut(s)	7, 41, 309, 429, 618
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	2 cut(s)	549, 826
AlwI	GGATC	3 cut(s)	75, 478, 521
AoxI	GGCC	2 cut(s)	848, 906
ApeKI	GCWGC	1 cut(s)	764
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	257
AsuHPI	GGTGA	3 cut(s)	787, 841, 870
BalI	TGGCCA	1 cut(s)	850
BanII	GRGCYC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	776
BccI	CCATC	5 cut(s)	122, 221, 240, 503, 877
BciT130I	CCWGG	2 cut(s)	468, 659
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	549, 826
BcuI	ACTAGT	2 cut(s)	161, 170
BfaI	CTAG	2 cut(s)	162, 171
BisI	GCNGC	1 cut(s)	765
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	766
BmcAI	AGTACT	2 cut(s)	169, 346
Bme1390I	CCNGG	2 cut(s)	468, 659
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	468, 659
BmrI	ACTGGG	1 cut(s)	794
BmsI	GCATC	3 cut(s)	41, 727, 884
BmuI	ACTGGG	1 cut(s)	794
BpmI	CTGGAG	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	529
Bse1I	ACTGG	3 cut(s)	440, 548, 800
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	468, 659
BseCI	ATCGAT	1 cut(s)	117
BseGI	GGATG	3 cut(s)	32, 77, 473
BseJI	GATNNNNATC	1 cut(s)	525
BseMII	CTCAG	3 cut(s)	426, 701, 854
BseNI	ACTGG	3 cut(s)	440, 548, 800
BseRI	GAGGAG	3 cut(s)	73, 453, 636
BseXI	GCAGC	1 cut(s)	776
BsgI	GTGCAG	1 cut(s)	668
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	850, 908
BshVI	ATCGAT	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	386
BsmAI	GTCTC	2 cut(s)	549, 826
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	2 cut(s)	850, 908
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
Bsp1720I	GCTNAGC	1 cut(s)	435
BspANI	GGCC	2 cut(s)	850, 908
BspCNI	CTCAG	3 cut(s)	427, 702, 853
BspDI	ATCGAT	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	546
BspPI	GGATC	3 cut(s)	75, 478, 521
BspQI	GCTCTTC	3 cut(s)	239, 419, 625
BsrI	ACTGG	3 cut(s)	440, 548, 800
BssMI	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
Bst2UI	CCWGG	2 cut(s)	468, 659
Bst4CI	ACNGT	5 cut(s)	359, 369, 577, 781, 856
Bst6I	CTCTTC	5 cut(s)	239, 335, 400, 419, 625
BstC8I	GCNNGC	2 cut(s)	616, 813
BstDEI	CTNAG	3 cut(s)	435, 710, 840
BstF5I	GGATG	3 cut(s)	32, 77, 473
BstKTI	GATC	7 cut(s)	70, 121, 155, 286, 448, 473, 529
BstMAI	GTCTC	2 cut(s)	549, 826
BstMBI	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 611, 881
BstNI	CCWGG	2 cut(s)	468, 659
BstSCI	CCNGG	2 cut(s)	466, 657
BstV1I	GCAGC	1 cut(s)	776
BstXI	CCANNNNNNTGG	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	850, 908
BsuTUI	ATCGAT	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	32, 77, 473
BtsI	GCAGTG	3 cut(s)	286, 680, 685
BtsIMutI	CAGTG	5 cut(s)	286, 582, 680, 685, 807
Cac8I	GCNNGC	2 cut(s)	616, 813
ClaI	ATCGAT	1 cut(s)	117
CsiI	ACCWGGT	1 cut(s)	657
Csp6I	GTAC	3 cut(s)	168, 174, 345
CviQI	GTAC	3 cut(s)	168, 174, 345
DdeI	CTNAG	3 cut(s)	435, 710, 840
DpnI	GATC	7 cut(s)	69, 120, 154, 285, 447, 472, 528
DpnII	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
EaeI	YGGCCR	1 cut(s)	848
Eam1104I	CTCTTC	5 cut(s)	239, 335, 400, 419, 625
EarI	CTCTTC	5 cut(s)	239, 335, 400, 419, 625
Ecl136II	GAGCTC	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	429
Eco57I	CTGAAG	2 cut(s)	381, 594
EcoICRI	GAGCTC	1 cut(s)	429
EcoRII	CCWGG	2 cut(s)	466, 657
EcoRV	GATATC	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	431
FaiI	YATR	8 cut(s)	17, 53, 55, 65, 327, 525, 597, 755
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 488, 520
FaqI	GGGAC	1 cut(s)	386
FauNDI	CATATG	1 cut(s)	53
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	765
FokI	GGATG	3 cut(s)	19, 64, 460
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	1 cut(s)	765
FspBI	CTAG	2 cut(s)	162, 171
GluI	GCNGC	1 cut(s)	765
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	850, 908
HapII	CCGG	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	2 cut(s)	143, 599
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	3 cut(s)	787, 841, 870
Hpy188I	TCNGA	3 cut(s)	288, 373, 520
Hpy188III	TCNNGA	4 cut(s)	147, 241, 477, 726
HpyAV	CCTTC	4 cut(s)	660, 695, 728, 766
HpyCH4III	ACNGT	5 cut(s)	359, 369, 577, 781, 856
HpyCH4V	TGCA	7 cut(s)	32, 685, 690, 764, 815, 863, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 611, 881
HpyF3I	CTNAG	3 cut(s)	435, 710, 840
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
LguI	GCTCTTC	3 cut(s)	239, 419, 625
Lsp1109I	GCAGC	1 cut(s)	776
LweI	GCATC	3 cut(s)	41, 727, 884
MabI	ACCWGGT	1 cut(s)	657
MaeI	CTAG	2 cut(s)	162, 171
MaeIII	GTNAC	5 cut(s)	491, 678, 739, 775, 793
MalI	GATC	7 cut(s)	69, 120, 154, 285, 447, 472, 528
MboI	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
MhlI	GDGCHC	1 cut(s)	431
MlsI	TGGCCA	1 cut(s)	850
MluNI	TGGCCA	1 cut(s)	850
MmeI	TCCRAC	3 cut(s)	121, 532, 678
Mox20I	TGGCCA	1 cut(s)	850
MroXI	GAANNNNTTC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	850
MseI	TTAA	2 cut(s)	186, 384
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	850
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	468, 659
Mva1269I	GAATGC	1 cut(s)	841
MvaI	CCWGG	2 cut(s)	468, 659
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 611, 881
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	4 cut(s)	491, 678, 739, 775
PciSI	GCTCTTC	3 cut(s)	239, 419, 625
PctI	GAATGC	1 cut(s)	841
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	143, 599
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	766
Ple19I	CGATCG	1 cut(s)	121
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	466, 657
PspGI	CCWGG	2 cut(s)	466, 657
PspN4I	GGNNCC	1 cut(s)	546
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	169, 175, 346
RsaNI	GTAC	3 cut(s)	168, 174, 345
RseI	CAYNNNNRTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	431
SapI	GCTCTTC	3 cut(s)	239, 419, 625
SaqAI	TTAA	2 cut(s)	186, 384
SatI	GCNGC	1 cut(s)	765
Sau3AI	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
ScaI	AGTACT	2 cut(s)	169, 346
ScrFI	CCNGG	2 cut(s)	468, 659
SduI	GDGCHC	1 cut(s)	431
SexAI	ACCWGGT	1 cut(s)	657
SfaNI	GCATC	3 cut(s)	41, 727, 884
SmiMI	CAYNNNNRTG	1 cut(s)	578
SpeI	ACTAGT	2 cut(s)	161, 170
SspMI	CTAG	2 cut(s)	162, 171
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	466, 657
TaaI	ACNGT	5 cut(s)	359, 369, 577, 781, 856
TaqI	TCGA	3 cut(s)	109, 117, 507
TatI	WGTACW	3 cut(s)	167, 173, 344
TfiI	GAWTC	2 cut(s)	143, 599
Tru1I	TTAA	2 cut(s)	186, 384
Tru9I	TTAA	2 cut(s)	186, 384
TscAI	CASTG	5 cut(s)	286, 582, 687, 692, 807
TseFI	GTSAC	4 cut(s)	491, 678, 739, 775
TseI	GCWGC	1 cut(s)	764
Tsp45I	GTSAC	4 cut(s)	491, 678, 739, 775
TspDTI	ATGAA	3 cut(s)	17, 596, 612
TspRI	CASTG	5 cut(s)	286, 582, 687, 692, 807
VspI	ATTAAT	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	2 cut(s)	162, 171
ZrmI	AGTACT	2 cut(s)	169, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.