Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006552

Physical Location & Seq

Genomic Coordinates Reverse (-)

13670140 .. 13672468

Gene Structure 2329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG159300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAGCTGAAAGGCATAGATATCTTCTGTGCATCCCAAGCTTCAACAGCCATATGTTTCAGTATGGATCAAGCCTCATCCTCCTCATCAGTTTTCCAACTTGGTGGTCGAGCCATCGATCGCCACAATCCCATTATCCAAGATTCAAGAAGATCAAGCACTAGTAGTACTAGTACTAGATTTATTAATCCTCCTTGCTATTCTCAACCACCCATCAATCCCAAAACTTACCATCAACTCCAGAAGAGCAAGAAAAACTTCTCATCTTCAAAGACAAGTAGTGATCAGAGCAAGAAGAAGATTGTGAGCTTCTCAAAAGAAAAGTATGAGCAAAAGAGGAAGAGTACTTCTTCTAACGGTAAGAAACCGTCTGATGATAATGTTAAGAAGCACTCTTCAGTCCCAAGTGGAAGTGTTGTTAGGAAGAGCTCTACTGAGCCAGTTGATCTTATCAGTATTACTCCTCCTGGATCATCCAGATACCTTTTGAGTGACAAGGTGTTCTTCGATGGGTTATCTGATTATGATCCGGTTTCAACATTGGTTCCAGTTGGAGACAAGGAAAACCAAAACACAGTGATGAATAAGCAAGAATATGAATCTGCTTCTTCAGCAAGCTCTTCCTCATCTCTGTCAAAACCACCTCCTCCTTCCAACCAGGTTTGTACAAATTCTTTCCTTTATTTTTTCTTTTCAAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010015 GO:0010232 GO:0010233 GO:0019725 GO:0022414 GO:0022622 GO:0030001 GO:0030003 GO:0032501 GO:0032502 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055076 GO:0055078 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0098771 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

234

Amino Acids

25.66

Weight (kDa)

9.6

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37390 AT2G37390 AT3G53530 AT3G53530
fragaria_vesca	FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630
malus_domestica	MD04G1118300.v1.1 MD12G1133800.v1.1
prunus_persica	Prupe.6G247400_v2.0.a1 Prupe.6G247400_v2.0.a1
pyrus_communis	pycom04g10790 pycom12g12910
rosa_chinensis	RchiOBHm_Chr3g0467751
rosa_laevigata	RLG00000024476
rosa_multiflora	Rmu_sc0001793.1_g000025
rosa_roxburghii	Rroxscaffold_6G00413450
rosa_rugosa	Rorug03G0089600
rosa_samantha	Rh3AG138000 Rh3BG159300 Rh3CG159200 Rh3DG159700
rosa_wichuraiana	Rw3G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	75, 478, 521
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	2 cut(s)	381, 594
AfaI	GTAC	4 cut(s)	169, 175, 346, 667
AgsI	TTSAA	5 cut(s)	45, 147, 270, 537, 696
AhlI	ACTAGT	2 cut(s)	161, 170
AjnI	CCWGG	2 cut(s)	466, 657
AluBI	AGCT	5 cut(s)	7, 41, 309, 429, 618
AluI	AGCT	5 cut(s)	7, 41, 309, 429, 618
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	3 cut(s)	75, 478, 521
ApoI	RAATTY	1 cut(s)	670
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	431
BccI	CCATC	4 cut(s)	122, 221, 240, 503
BciT130I	CCWGG	2 cut(s)	468, 659
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	549
BcuI	ACTAGT	2 cut(s)	161, 170
BfaI	CTAG	3 cut(s)	162, 171, 177
BmcAI	AGTACT	3 cut(s)	169, 175, 346
Bme1390I	CCNGG	2 cut(s)	468, 659
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	468, 659
BmsI	GCATC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	440, 548
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	468, 659
BseCI	ATCGAT	1 cut(s)	117
BseGI	GGATG	3 cut(s)	32, 77, 473
BseJI	GATNNNNATC	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	440, 548
BseRI	GAGGAG	3 cut(s)	73, 453, 636
Bsh1285I	CGRYCG	1 cut(s)	121
BshVI	ATCGAT	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp1407I	TGTACA	1 cut(s)	665
Bsp143I	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
BspCNI	CTCAG	1 cut(s)	427
BspDI	ATCGAT	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	546
BspPI	GGATC	3 cut(s)	75, 478, 521
BspQI	GCTCTTC	3 cut(s)	239, 419, 625
BsrGI	TGTACA	1 cut(s)	665
BsrI	ACTGG	2 cut(s)	440, 548
BssMI	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
Bst2UI	CCWGG	2 cut(s)	468, 659
Bst4CI	ACNGT	3 cut(s)	359, 369, 577
Bst6I	CTCTTC	5 cut(s)	239, 335, 400, 419, 625
BstAUI	TGTACA	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	1 cut(s)	435
BstF5I	GGATG	3 cut(s)	32, 77, 473
BstKTI	GATC	7 cut(s)	70, 121, 155, 286, 448, 473, 529
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 611
BstNI	CCWGG	2 cut(s)	468, 659
BstSCI	CCNGG	2 cut(s)	466, 657
BstXI	CCANNNNNNTGG	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	117
BsuTUI	ATCGAT	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	32, 77, 473
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	1 cut(s)	616
ClaI	ATCGAT	1 cut(s)	117
CsiI	ACCWGGT	1 cut(s)	657
Csp6I	GTAC	4 cut(s)	168, 174, 345, 666
CviJI	RGCY	9 cut(s)	7, 41, 50, 74, 113, 309, 429, 439, 618
CviKI_1	RGCY	9 cut(s)	7, 41, 50, 74, 113, 309, 429, 439, 618
CviQI	GTAC	4 cut(s)	168, 174, 345, 666
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	7 cut(s)	69, 120, 154, 285, 447, 472, 528
DpnII	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
Eam1104I	CTCTTC	5 cut(s)	239, 335, 400, 419, 625
EarI	CTCTTC	5 cut(s)	239, 335, 400, 419, 625
Ecl136II	GAGCTC	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	429
Eco57I	CTGAAG	2 cut(s)	381, 594
EcoICRI	GAGCTC	1 cut(s)	429
EcoRII	CCWGG	2 cut(s)	466, 657
EcoRV	GATATC	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	431
FaiI	YATR	7 cut(s)	17, 53, 55, 65, 327, 525, 597
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 488, 520
FaqI	GGGAC	1 cut(s)	386
FauNDI	CATATG	1 cut(s)	53
FbaI	TGATCA	1 cut(s)	283
FokI	GGATG	3 cut(s)	19, 64, 460
FriOI	GRGCYC	1 cut(s)	431
FspBI	CTAG	3 cut(s)	162, 171, 177
GsuI	CTGGAG	1 cut(s)	224
HapII	CCGG	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	2 cut(s)	143, 599
HpaII	CCGG	1 cut(s)	530
Hpy188I	TCNGA	3 cut(s)	288, 373, 520
Hpy188III	TCNNGA	3 cut(s)	147, 241, 477
HpyAV	CCTTC	1 cut(s)	660
HpyCH4III	ACNGT	3 cut(s)	359, 369, 577
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 611
HpyF3I	CTNAG	1 cut(s)	435
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
LguI	GCTCTTC	3 cut(s)	239, 419, 625
LpnPI	CCDG	9 cut(s)	254, 453, 453, 480, 490, 543, 561, 644, 671
LweI	GCATC	1 cut(s)	41
MabI	ACCWGGT	1 cut(s)	657
MaeI	CTAG	3 cut(s)	162, 171, 177
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	7 cut(s)	69, 120, 154, 285, 447, 472, 528
MboI	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	1 cut(s)	670
MmeI	TCCRAC	3 cut(s)	121, 532, 678
MnlI	CCTC	9 cut(s)	85, 91, 94, 201, 330, 474, 634, 654, 657
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	186, 384
MslI	CAYNNNNRTG	1 cut(s)	578
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	468, 659
MvaI	CCWGG	2 cut(s)	468, 659
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 611
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	491
PciSI	GCTCTTC	3 cut(s)	239, 419, 625
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	143, 599
PfoI	TCCNGGA	1 cut(s)	466
Ple19I	CGATCG	1 cut(s)	121
PshBI	ATTAAT	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	466, 657
PspGI	CCWGG	2 cut(s)	466, 657
PspN4I	GGNNCC	1 cut(s)	546
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	4 cut(s)	169, 175, 346, 667
RsaNI	GTAC	4 cut(s)	168, 174, 345, 666
RseI	CAYNNNNRTG	1 cut(s)	578
SacI	GAGCTC	1 cut(s)	431
SapI	GCTCTTC	3 cut(s)	239, 419, 625
SaqAI	TTAA	2 cut(s)	186, 384
Sau3AI	GATC	7 cut(s)	67, 118, 152, 283, 445, 470, 526
ScaI	AGTACT	3 cut(s)	169, 175, 346
ScrFI	CCNGG	2 cut(s)	468, 659
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	9 cut(s)	9, 43, 311, 431, 486, 501, 620, 646, 663
SexAI	ACCWGGT	1 cut(s)	657
SfaNI	GCATC	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	578
SpeI	ACTAGT	2 cut(s)	161, 170
Sse9I	AATT	1 cut(s)	670
SspMI	CTAG	3 cut(s)	162, 171, 177
SstI	GAGCTC	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	466, 657
TaaI	ACNGT	3 cut(s)	359, 369, 577
TaqI	TCGA	3 cut(s)	109, 117, 507
TasI	AATT	1 cut(s)	670
TatI	WGTACW	4 cut(s)	167, 173, 344, 665
TfiI	GAWTC	2 cut(s)	143, 599
Tru1I	TTAA	2 cut(s)	186, 384
Tru9I	TTAA	2 cut(s)	186, 384
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	17, 596, 612
TspRI	CASTG	1 cut(s)	582
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	3 cut(s)	162, 171, 177
ZrmI	AGTACT	3 cut(s)	169, 175, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.