Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006552

Physical Location & Seq

Genomic Coordinates Forward (+)

24380056 .. 24382778

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAAGATGAAGGGGATAGATATCTTCTGTGCATCCCAAGCTTCAACAGCCATATGTTTGAGCATGGATCAAGCATCATCCTCCTCATCCTCATCAATCATTCAACTTGGTGGCAGAGCAATCGACCGCCACAACCCCATTATCAAAGATGCAAGAAGAAGCACAAGCACCAGAACTCTGCCCATTGCTCCATGCTCTTCTTCTCAGTCACCAATCAATCCCAAGGCTTACCATCAACTCCAAAAGAGCAAAAAGAAAAGCTCCCCCTCTTCATCATCAAGACCAAGCACTGACCATCACCAAACCAAGAAGAAGAGCTCCTCTTTTAGCTCCACAAAAGAAAATGACCAGAAGAGGAAGAGCAGTGCTTCTAATCCCAAGCCAGCTGATAATGTTAAGAAATTCTCCTCTGTTCCAAGTGAGAGTGTTACGAAGAGCTCTGCCAACCCAATTGATCTCATCACCCCTCCTGGCTCCTCCAGATACCTTTTGAGTGACACTGTGTACTTTGATGGGTTATCTGATTATGATCCAGTTTTGGCATTGGTTCCAGTTGGGCACAAAAAGAACCCAGCTACAGTGCTGAATCAAGAAAATCAATCTGCCAATAATTCTTCAACAGGCTCATCCTCATCTCTGTCAAAACCACAACCACCACCTCCTCCTTCCAACCAGGTTGTAGTCTTAAGGGTGTCCCTGCACTGCAAAGGCTGTGAAGGAAAACTGAGAAAACATCTATCTAGAATGGAAGGAGTGACATCTTTCAACATAGACTTTGCAGCCAAGAAGGTGACTGTCAGTGGAGATGTAACCCCATTGAGTGTCCTTGCCAGTGTCTCAAAGGTGAAGAATGCTCAATTTTGGCCAACAGTGTCTGCATCATCTACCTCACCAGCTTGTCCTACCAAACTAGAGGCCAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010015 GO:0010232 GO:0010233 GO:0019725 GO:0022414 GO:0022622 GO:0030001 GO:0030003 GO:0032501 GO:0032502 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055076 GO:0055078 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0098771 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

309

Amino Acids

32.8

Weight (kDa)

9.9

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37390 AT2G37390 AT3G53530 AT3G53530
fragaria_vesca	FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630 FvH4_6g14630
malus_domestica	MD04G1118300.v1.1 MD12G1133800.v1.1
prunus_persica	Prupe.6G247400_v2.0.a1 Prupe.6G247400_v2.0.a1
pyrus_communis	pycom04g10790 pycom12g12910
rosa_chinensis	RchiOBHm_Chr3g0467751
rosa_laevigata	RLG00000024476
rosa_multiflora	Rmu_sc0001793.1_g000025
rosa_roxburghii	Rroxscaffold_6G00413450
rosa_rugosa	Rorug03G0089600
rosa_samantha	Rh3AG138000 Rh3BG159300 Rh3CG159200 Rh3DG159700
rosa_wichuraiana	Rw3G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	2 cut(s)	75, 524
AcoI	YGGCCR	1 cut(s)	863
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	1 cut(s)	506
AflII	CTTAAG	1 cut(s)	685
AgsI	TTSAA	4 cut(s)	45, 104, 618, 766
AjnI	CCWGG	2 cut(s)	469, 672
AluBI	AGCT	8 cut(s)	41, 261, 318, 330, 386, 438, 575, 896
AluI	AGCT	8 cut(s)	41, 261, 318, 330, 386, 438, 575, 896
Alw21I	GWGCWC	2 cut(s)	320, 440
Alw26I	GTCTC	1 cut(s)	841
AlwI	GGATC	2 cut(s)	75, 524
AlwNI	CAGNNNCTG	1 cut(s)	875
AoxI	GGCC	2 cut(s)	863, 915
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	1 cut(s)	401
AsuHPI	GGTGA	6 cut(s)	201, 290, 454, 802, 856, 882
BaeGI	GKGCMC	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	865
BanII	GRGCYC	2 cut(s)	320, 440
Bbv12I	GWGCWC	2 cut(s)	320, 440
BbvI	GCAGC	1 cut(s)	791
BccI	CCATC	3 cut(s)	240, 303, 506
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	2 cut(s)	471, 674
BcoDI	GTCTC	1 cut(s)	841
BfaI	CTAG	2 cut(s)	741, 911
BfmI	CTRYAG	1 cut(s)	576
BfrI	CTTAAG	1 cut(s)	685
BisI	GCNGC	1 cut(s)	780
BlsI	GCNGC	1 cut(s)	781
Bme1390I	CCNGG	2 cut(s)	471, 674
BmiI	GGNNCC	2 cut(s)	475, 549
BmrFI	CCNGG	2 cut(s)	471, 674
BmsI	GCATC	4 cut(s)	41, 83, 139, 887
BpmI	CTGGAG	1 cut(s)	463
BsaBI	GATNNNNATC	2 cut(s)	20, 528
BsaJI	CCNNGG	1 cut(s)	222
Bse1I	ACTGG	3 cut(s)	533, 551, 831
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	2 cut(s)	20, 528
BseBI	CCWGG	2 cut(s)	471, 674
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	4 cut(s)	32, 77, 86, 626
BseJI	GATNNNNATC	2 cut(s)	20, 528
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	218, 716
BseNI	ACTGG	3 cut(s)	533, 551, 831
BseRI	GAGGAG	5 cut(s)	73, 310, 397, 466, 651
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	1 cut(s)	791
BseYI	CCCAGC	1 cut(s)	571
BsgI	GTGCAG	1 cut(s)	683
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	865, 917
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	2 cut(s)	320, 440
BslFI	GGGAC	1 cut(s)	679
BsmAI	GTCTC	1 cut(s)	841
BsmFI	GGGAC	1 cut(s)	679
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	2 cut(s)	865, 917
Bsp1286I	GDGCHC	3 cut(s)	320, 440, 561
Bsp143I	GATC	3 cut(s)	67, 454, 529
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	2 cut(s)	865, 917
BspCNI	CTCAG	2 cut(s)	217, 717
BspLI	GGNNCC	2 cut(s)	475, 549
BspPI	GGATC	2 cut(s)	75, 524
BspQI	GCTCTTC	4 cut(s)	202, 308, 353, 428
BspTI	CTTAAG	1 cut(s)	685
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	3 cut(s)	533, 551, 831
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	67, 454, 529
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	471, 674
Bst4CI	ACNGT	4 cut(s)	502, 580, 796, 871
Bst6I	CTCTTC	6 cut(s)	202, 274, 308, 347, 353, 428
BstAFI	CTTAAG	1 cut(s)	685
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	204, 725
BstF5I	GGATG	4 cut(s)	32, 77, 86, 626
BstKTI	GATC	3 cut(s)	70, 457, 532
BstMAI	GTCTC	1 cut(s)	841
BstMBI	GATC	3 cut(s)	67, 454, 529
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNI	CCWGG	2 cut(s)	471, 674
BstSCI	CCNGG	2 cut(s)	469, 672
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	561
BstV1I	GCAGC	1 cut(s)	791
BsuRI	GGCC	2 cut(s)	865, 917
BtsCI	GGATG	4 cut(s)	32, 77, 86, 626
BtsI	GCAGTG	2 cut(s)	370, 700
BtsIMutI	CAGTG	8 cut(s)	288, 370, 498, 585, 700, 805, 838, 876
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	875
CsiI	ACCWGGT	1 cut(s)	672
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	2 cut(s)	64, 192
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	2 cut(s)	204, 725
DpnI	GATC	3 cut(s)	69, 456, 531
DpnII	GATC	3 cut(s)	67, 454, 529
EaeI	YGGCCR	1 cut(s)	863
Eam1104I	CTCTTC	6 cut(s)	202, 274, 308, 347, 353, 428
EarI	CTCTTC	6 cut(s)	202, 274, 308, 347, 353, 428
Ecl136II	GAGCTC	2 cut(s)	318, 438
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	2 cut(s)	320, 440
Eco32I	GATATC	1 cut(s)	22
Eco53kI	GAGCTC	2 cut(s)	318, 438
EcoICRI	GAGCTC	2 cut(s)	318, 438
EcoRII	CCWGG	2 cut(s)	469, 672
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	320, 440
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	67, 195
FaiI	YATR	6 cut(s)	53, 55, 65, 193, 528, 770
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	2 cut(s)	63, 191
FauNDI	CATATG	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	780
FokI	GGATG	4 cut(s)	19, 64, 73, 613
FriOI	GRGCYC	2 cut(s)	320, 440
Fsp4HI	GCNGC	1 cut(s)	780
FspBI	CTAG	2 cut(s)	741, 911
GluI	GCNGC	1 cut(s)	780
GsaI	CCCAGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	865, 917
Hin1II	CATG	2 cut(s)	67, 195
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	1 cut(s)	586
HphI	GGTGA	6 cut(s)	201, 290, 454, 802, 856, 882
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	4 cut(s)	279, 480, 590, 741
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	5 cut(s)	4, 675, 710, 743, 781
HpyCH4III	ACNGT	4 cut(s)	502, 580, 796, 871
HpyCH4V	TGCA	6 cut(s)	32, 152, 700, 705, 779, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	2 cut(s)	204, 725
Hsp92II	CATG	2 cut(s)	67, 195
Kzo9I	GATC	3 cut(s)	67, 454, 529
LguI	GCTCTTC	4 cut(s)	202, 308, 353, 428
LmnI	GCTCC	5 cut(s)	193, 266, 323, 335, 479
Lsp1109I	GCAGC	1 cut(s)	791
LweI	GCATC	4 cut(s)	41, 83, 139, 887
MabI	ACCWGGT	1 cut(s)	672
MaeI	CTAG	2 cut(s)	741, 911
MaeIII	GTNAC	6 cut(s)	207, 427, 494, 754, 790, 808
MalI	GATC	3 cut(s)	69, 456, 531
MboI	GATC	3 cut(s)	67, 454, 529
MfeI	CAATTG	1 cut(s)	450
MhlI	GDGCHC	3 cut(s)	320, 440, 561
MlsI	TGGCCA	1 cut(s)	865
MluCI	AATT	4 cut(s)	401, 450, 610, 857
MluNI	TGGCCA	1 cut(s)	865
MmeI	TCCRAC	1 cut(s)	693
Mox20I	TGGCCA	1 cut(s)	865
MscI	TGGCCA	1 cut(s)	865
MseI	TTAA	2 cut(s)	396, 686
Msp20I	TGGCCA	1 cut(s)	865
MspA1I	CMGCKG	1 cut(s)	386
MspCI	CTTAAG	1 cut(s)	685
MspR9I	CCNGG	2 cut(s)	471, 674
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	2 cut(s)	471, 674
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	3 cut(s)	67, 454, 529
NlaIII	CATG	2 cut(s)	67, 195
NlaIV	GGNNCC	2 cut(s)	475, 549
NmuCI	GTSAC	4 cut(s)	207, 494, 754, 790
PciSI	GCTCTTC	4 cut(s)	202, 308, 353, 428
PctI	GAATGC	1 cut(s)	856
PfeI	GAWTC	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	781
Psp124BI	GAGCTC	2 cut(s)	320, 440
Psp6I	CCWGG	2 cut(s)	469, 672
PspFI	CCCAGC	1 cut(s)	571
PspGI	CCWGG	2 cut(s)	469, 672
PspN4I	GGNNCC	2 cut(s)	475, 549
PstNI	CAGNNNCTG	1 cut(s)	875
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
SacI	GAGCTC	2 cut(s)	320, 440
SapI	GCTCTTC	4 cut(s)	202, 308, 353, 428
SaqAI	TTAA	2 cut(s)	396, 686
SatI	GCNGC	1 cut(s)	780
Sau3AI	GATC	3 cut(s)	67, 454, 529
ScrFI	CCNGG	2 cut(s)	471, 674
SduI	GDGCHC	3 cut(s)	320, 440, 561
SexAI	ACCWGGT	1 cut(s)	672
SfaNI	GCATC	4 cut(s)	41, 83, 139, 887
SfcI	CTRYAG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
Sse9I	AATT	4 cut(s)	401, 450, 610, 857
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	2 cut(s)	741, 911
SstI	GAGCTC	2 cut(s)	320, 440
StyD4I	CCNGG	2 cut(s)	469, 672
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	4 cut(s)	502, 580, 796, 871
TaqI	TCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	401, 450, 610, 857
TatI	WGTACW	1 cut(s)	504
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	2 cut(s)	396, 686
Tru9I	TTAA	2 cut(s)	396, 686
TscAI	CASTG	8 cut(s)	295, 370, 505, 585, 707, 805, 838, 876
TseFI	GTSAC	4 cut(s)	207, 494, 754, 790
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	4 cut(s)	207, 494, 754, 790
TspDTI	ATGAA	3 cut(s)	17, 23, 261
TspRI	CASTG	8 cut(s)	295, 370, 505, 585, 707, 805, 838, 876
Vha464I	CTTAAG	1 cut(s)	685
XapI	RAATTY	1 cut(s)	401
XbaI	TCTAGA	1 cut(s)	740
XspI	CTAG	2 cut(s)	741, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.