Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015882

Physical Location & Seq

Genomic Coordinates Reverse (-)

15827416 .. 15828784

Gene Structure 1369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGAAACCTGGTGGCTTCTGGATCCCCAAGAAAAGCAACAAAGAGTCATCTTGGGAAGAGCTGGCCTTTGCAGAAGACGATGCCGCCGGATCTTTGTGGCCGCCAAGATCTTATACGTGTAGCTTCTGCCGGAGAGAATTTAAATCGGCTCAAGCCCTCGGTGGCCATATGAACGTTCACCGAAGAGACAGAGCACGGCTTAAGCAAGCCGACGACCAATACTTATTCCCCAAATCTTCTTCGTCTCCAGAGTATCCATCTCATAAAGATAGCGATAATATTCATGAAACCTCTTGCTATACTTTGGTTTTTAACACCAAACCTAATTATTTTAAGACTCAACACTCTTGTGTTATTGATCTTTCTTCGTCTTCTTCTTTACCATATTTGACTCCTTCTAGGGTTTCTTCTGGTTTGCCTGGAAAGCAACATACTTCTTCTTCTCCTCCTTCTTTCGTTGTAGAACCTTCCAAGAACTCTAAATATATTCCCTCTTCTTCCCCATGGTCGTGCCCAAGTACTGTTGTGGAGCAAAAGAGTTGTGATCTATATGAAATTCCGGCTATGGAAGGAGAAAAGAAGAGAAAGACTGAGAGTGATGTGCCAAAAATCGGGCATAAAGCAAAACTTAGTCTTGGAAACACCACTGATCTCTCGGTGAGTATGAATCTGGTCATCCACCAAAGTTTTCCGATTACTGCTCACGGTAGCGATGAAGAGATTGGTAGGGTGGATATCCGTAAAAGAAGACGAAGACATGAGAGTCCGTCGCAGCAGTCGATTTTCATTTCAAGTTTATCTTGTAAGAGTGACATAATTACAAGAAACGAGGAAAGCAAACACAAAGGTGATCGCTTTGAGGATTTAGATCTTGAGCTTAGGCTAGGGACTGATCCACCAAAAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

304

Amino Acids

34.12

Weight (kDa)

8.57

Isoelectric Point (pI)

72.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	39 - 63	7.6e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37740
fragaria_vesca	FvH4_6g13130
malus_domestica	MD04G1134600.v1.1 MD12G1148100.v1.1
prunus_persica	Prupe.6G260700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0465501
rosa_laevigata	RLG00000024638 RLG00000025445
rosa_multiflora	Rmu_sc0001712.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415010
rosa_rugosa	Rorug03G0077000
rosa_samantha	Rh3BG142400 Rh3CG143600 Rh3DG143500
rosa_wichuraiana	Rw3G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	765
AciI	CCGC	2 cut(s)	87, 104
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	4 cut(s)	19, 32, 100, 890
AcoI	YGGCCR	2 cut(s)	101, 166
AcsI	RAATTY	3 cut(s)	140, 558, 909
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	2 cut(s)	614, 905
AflII	CTTAAG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	795
AjnI	CCWGG	2 cut(s)	10, 421
AleI	CACNNNNGTG	2 cut(s)	351, 849
AluBI	AGCT	3 cut(s)	64, 126, 880
AluI	AGCT	3 cut(s)	64, 126, 880
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	183, 252
AlwI	GGATC	4 cut(s)	19, 32, 100, 890
AoxI	GGCC	3 cut(s)	66, 101, 166
ApeKI	GCWGC	1 cut(s)	775
ApoI	RAATTY	3 cut(s)	140, 558, 909
AsuHPI	GGTGA	3 cut(s)	173, 673, 863
BaeGI	GKGCMC	1 cut(s)	518
BalI	TGGCCA	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	24
BbsI	GAAGAC	4 cut(s)	84, 366, 757, 763
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	787
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	12, 423
BciVI	GTATCC	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	183, 252
BfaI	CTAG	2 cut(s)	402, 887
BfrI	CTTAAG	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	267
BglII	AGATCT	2 cut(s)	110, 871
BisI	GCNGC	3 cut(s)	87, 104, 776
BlsI	GCNGC	3 cut(s)	88, 105, 777
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	2 cut(s)	12, 423
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	12, 423
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	4 cut(s)	84, 366, 757, 763
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	881
BpuEI	CTTGAG	2 cut(s)	138, 896
BsaAI	YACGTR	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	870
BsaJI	CCNNGG	2 cut(s)	160, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 905
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	2 cut(s)	12, 423
BseDI	CCNNGG	2 cut(s)	160, 506
BseGI	GGATG	1 cut(s)	678
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	2 cut(s)	614, 905
BseMII	CTCAG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	438
BseSI	GKGCMC	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	787
BshFI	GGCC	3 cut(s)	68, 103, 168
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	3 cut(s)	90, 133, 563
BslFI	GGGAC	1 cut(s)	904
BslI	CCNNNNNNNGG	2 cut(s)	614, 905
BsmAI	GTCTC	2 cut(s)	183, 252
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	904
BsnI	GGCC	3 cut(s)	68, 103, 168
Bsp1286I	GDGCHC	2 cut(s)	199, 518
Bsp143I	GATC	9 cut(s)	24, 92, 110, 361, 547, 652, 853, 871, 895
Bsp19I	CCATGG	1 cut(s)	506
BspACI	CCGC	2 cut(s)	87, 104
BspANI	GGCC	3 cut(s)	68, 103, 168
BspCNI	CTCAG	1 cut(s)	586
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	4 cut(s)	19, 32, 100, 890
BspQI	GCTCTTC	1 cut(s)	54
BspTI	CTTAAG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	160, 506
BssMI	GATC	9 cut(s)	24, 92, 110, 361, 547, 652, 853, 871, 895
BssT1I	CCWWGG	1 cut(s)	506
Bst2UI	CCWGG	2 cut(s)	12, 423
Bst4CI	ACNGT	2 cut(s)	526, 710
Bst6I	CTCTTC	5 cut(s)	54, 181, 502, 578, 714
BstAFI	CTTAAG	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	66, 210
BstDEI	CTNAG	3 cut(s)	594, 632, 881
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	678
BstKTI	GATC	9 cut(s)	27, 95, 113, 364, 550, 655, 856, 874, 898
BstMAI	GTCTC	2 cut(s)	183, 252
BstMBI	GATC	9 cut(s)	24, 92, 110, 361, 547, 652, 853, 871, 895
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	2 cut(s)	12, 423
BstSCI	CCNGG	2 cut(s)	10, 421
BstSLI	GKGCMC	1 cut(s)	518
BstV1I	GCAGC	1 cut(s)	787
BstV2I	GAAGAC	4 cut(s)	84, 366, 757, 763
BstX2I	RGATCY	4 cut(s)	24, 92, 110, 871
BstYI	RGATCY	4 cut(s)	24, 92, 110, 871
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	68, 103, 168
BtgI	CCRYGG	1 cut(s)	506
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	1 cut(s)	678
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	2 cut(s)	66, 210
CciI	TCATGA	1 cut(s)	286
CsiI	ACCWGGT	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	3 cut(s)	287, 507, 761
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	3 cut(s)	594, 632, 881
DpnI	GATC	9 cut(s)	26, 94, 112, 363, 549, 654, 855, 873, 897
DpnII	GATC	9 cut(s)	24, 92, 110, 361, 547, 652, 853, 871, 895
DraI	TTTAAA	1 cut(s)	145
DrdI	GACNNNNNNGTC	1 cut(s)	765
DseDI	GACNNNNNNGTC	1 cut(s)	765
EaeI	YGGCCR	2 cut(s)	101, 166
Eam1104I	CTCTTC	5 cut(s)	54, 181, 502, 578, 714
EarI	CTCTTC	5 cut(s)	54, 181, 502, 578, 714
Eco130I	CCWWGG	1 cut(s)	506
Eco32I	GATATC	1 cut(s)	739
EcoRII	CCWGG	2 cut(s)	10, 421
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	506
ErhI	CCWWGG	1 cut(s)	506
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	3 cut(s)	290, 510, 764
FalI	AAGNNNNNCTT	4 cut(s)	615, 647, 787, 819
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	3 cut(s)	286, 506, 760
FauNDI	CATATG	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	87, 104, 776
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	3 cut(s)	87, 104, 776
FspBI	CTAG	2 cut(s)	402, 887
GluI	GCNGC	3 cut(s)	87, 104, 776
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	68, 103, 168
HapII	CCGG	3 cut(s)	90, 133, 563
Hin1II	CATG	3 cut(s)	290, 510, 764
HinfI	GANTC	5 cut(s)	47, 340, 394, 670, 766
HpaII	CCGG	3 cut(s)	90, 133, 563
HphI	GGTGA	3 cut(s)	173, 673, 863
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	696
Hpy188III	TCNNGA	4 cut(s)	22, 251, 287, 875
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	218, 775
HpyAV	CCTTC	4 cut(s)	408, 462, 480, 566
HpyCH4III	ACNGT	2 cut(s)	526, 710
HpyCH4IV	ACGT	2 cut(s)	119, 177
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	3 cut(s)	594, 632, 881
HpySE526I	ACGT	2 cut(s)	119, 177
Hsp92II	CATG	3 cut(s)	290, 510, 764
Kzo9I	GATC	9 cut(s)	24, 92, 110, 361, 547, 652, 853, 871, 895
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	1 cut(s)	787
LweI	GCATC	1 cut(s)	73
MabI	ACCWGGT	1 cut(s)	10
MaeI	CTAG	2 cut(s)	402, 887
MaeII	ACGT	2 cut(s)	119, 177
MaeIII	GTNAC	1 cut(s)	812
MalI	GATC	9 cut(s)	26, 94, 112, 363, 549, 654, 855, 873, 897
MboI	GATC	9 cut(s)	24, 92, 110, 361, 547, 652, 853, 871, 895
MflI	RGATCY	4 cut(s)	24, 92, 110, 871
MhlI	GDGCHC	2 cut(s)	199, 518
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	5 cut(s)	140, 328, 558, 819, 909
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	4 cut(s)	56, 334, 388, 775
MnlI	CCTC	6 cut(s)	170, 304, 459, 505, 826, 856
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	4 cut(s)	144, 204, 315, 336
MslI	CAYNNNNRTG	3 cut(s)	351, 511, 849
Msp20I	TGGCCA	1 cut(s)	168
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	90, 133, 563
MspR9I	CCNGG	2 cut(s)	12, 423
MvaI	CCWGG	2 cut(s)	12, 423
MwoI	GCNNNNNNNGC	1 cut(s)	427
NcoI	CCATGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	171
NdeII	GATC	9 cut(s)	24, 92, 110, 361, 547, 652, 853, 871, 895
NlaIII	CATG	3 cut(s)	290, 510, 764
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	812
OliI	CACNNNNGTG	2 cut(s)	351, 849
PagI	TCATGA	1 cut(s)	286
PciSI	GCTCTTC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	779
PfeI	GAWTC	1 cut(s)	670
PkrI	GCNGC	3 cut(s)	88, 105, 777
PleI	GAGTC	4 cut(s)	55, 334, 388, 774
PpsI	GAGTC	4 cut(s)	55, 334, 388, 774
Ppu21I	YACGTR	1 cut(s)	120
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	10, 421
PspGI	CCWGG	2 cut(s)	10, 421
PspN4I	GGNNCC	1 cut(s)	26
PsuI	RGATCY	4 cut(s)	24, 92, 110, 871
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	3 cut(s)	351, 511, 849
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	4 cut(s)	144, 204, 315, 336
SatI	GCNGC	3 cut(s)	87, 104, 776
Sau3AI	GATC	9 cut(s)	24, 92, 110, 361, 547, 652, 853, 871, 895
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	4 cut(s)	56, 334, 388, 775
ScrFI	CCNGG	2 cut(s)	12, 423
SduI	GDGCHC	2 cut(s)	199, 518
SexAI	ACCWGGT	1 cut(s)	10
SfaNI	GCATC	1 cut(s)	73
SmiI	ATTTAAAT	1 cut(s)	145
SmiMI	CAYNNNNRTG	3 cut(s)	351, 511, 849
SmlI	CTYRAG	3 cut(s)	153, 203, 875
SmoI	CTYRAG	3 cut(s)	153, 203, 875
Sse9I	AATT	5 cut(s)	140, 328, 558, 819, 909
SsiI	CCGC	2 cut(s)	87, 104
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	2 cut(s)	402, 887
StyD4I	CCNGG	2 cut(s)	10, 421
StyI	CCWWGG	1 cut(s)	506
SwaI	ATTTAAAT	1 cut(s)	145
TaaI	ACNGT	2 cut(s)	526, 710
TaiI	ACGT	2 cut(s)	122, 180
TaqI	TCGA	1 cut(s)	782
TasI	AATT	5 cut(s)	140, 328, 558, 819, 909
TatI	WGTACW	1 cut(s)	521
TauI	GCSGC	2 cut(s)	89, 106
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	4 cut(s)	144, 204, 315, 336
Tru9I	TTAA	4 cut(s)	144, 204, 315, 336
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	1 cut(s)	775
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	7 cut(s)	188, 275, 303, 570, 683, 732, 778
TspGWI	ACGGA	2 cut(s)	731, 759
TspRI	CASTG	1 cut(s)	655
Vha464I	CTTAAG	1 cut(s)	203
XapI	RAATTY	3 cut(s)	140, 558, 909
XspI	CTAG	2 cut(s)	402, 887
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.