Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0015882

Physical Location & Seq

Genomic Coordinates Reverse (-)

22762613 .. 22763596

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1148100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAACAAGCACGGTATTGGATGTGGGCAAAGCGTAAACACAACAGCTCGAGTTCATCCAATCACGATCATCATGTTCAAGTGCCAACTTCAAACGATGATTCATGGGAAGAACAAGCTTTCGCCGAAGATGCAGCAGGGCCTCTCGGAGGCTGCATATGGCCTCCGAGATCTTATTCTTGCAGTTTCTGTAGGAGAGAGTTCCGTTCAGCTCAAGCTCTGGGCGGCCACATGAATGTTCACAGGAGAGACAGGGCTAGACTAAGGCAGTCTCCAAATGACGAAACTGCCCTTCAAAACAACCTTCATCATCATCAGGATCATGATCATTCTGTCCAAAATAGTGCTAATAATCCCTTTTCATCATCTTTGGGTAGTTTCCAATTCCCATCTCGTCAAGTTTGTGCCCTGGTTTACAACCCTAAAAACCCTAGTTCCGATCCCGGTATTATTGCAACATCAACACCGTCCTCAGTTTCTAAGCTTTCAGCTCAGCTACCATGTAAAAAGAATTGTGCTGAGCAAACCCTGATCCCACCTTCTTCTTCTTCTTCTGCATCTTCTCCTCAATCTTGGTCAGTCTTGGGCACAAACAGATATCATAACAACAAATCTGTGGCGAGAGATCATATTGAAGGAGAGAAGATTTCGAGAGTTGTAGAATATTCTGGTTCTTGTAGGGCAAAGGGTGATCATCATGTCGCAAATAATGATCATAATTTGTCTGTGAGTTTGAATTTGGTTGTCCGCTGTGCTCGTACTTCTGTCTCCAGTGATGGTGATGAGGCTATAGTTAGTTGCAAGAGAAGAAGAACGGATGACATCCCATCATCGTTACCCTTCTTCCTAAAATCAGGTTCTGTTGATAGAGTACATCATCTCCAACCAGCTGAAGGGTTTGAATTTAGCTCCAGCTCTATAGAAGACTTGGATCTTGAGCTTAGGCTTGGTGACCGACCTAAGGTAATTAAAGTTAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

328

Amino Acids

36.28

Weight (kDa)

8.36

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37740
fragaria_vesca	FvH4_6g13130
malus_domestica	MD04G1134600.v1.1 MD12G1148100.v1.1
prunus_persica	Prupe.6G260700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0465501
rosa_laevigata	RLG00000024638 RLG00000025445
rosa_multiflora	Rmu_sc0001712.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415010
rosa_rugosa	Rorug03G0077000
rosa_samantha	Rh3BG142400 Rh3CG143600 Rh3DG143500
rosa_wichuraiana	Rw3G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	225, 748
AclWI	GGATC	4 cut(s)	327, 434, 526, 939
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	736, 902
AcuI	CTGAAG	1 cut(s)	912
AfaI	GTAC	2 cut(s)	760, 873
AfiI	CCNNNNNNNGG	3 cut(s)	149, 893, 961
AgsI	TTSAA	6 cut(s)	80, 93, 296, 635, 736, 902
AjnI	CCWGG	1 cut(s)	408
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	3 cut(s)	243, 276, 772
AlwI	GGATC	4 cut(s)	327, 434, 526, 939
AlwNI	CAGNNNCTG	2 cut(s)	189, 860
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	3 cut(s)	140, 161, 226
ApeKI	GCWGC	2 cut(s)	134, 153
ApoI	RAATTY	2 cut(s)	736, 902
AspS9I	GGNCC	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	3 cut(s)	701, 791, 962
AvaI	CYCGRG	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	960
BaeGI	GKGCMC	2 cut(s)	409, 590
BbsI	GAAGAC	1 cut(s)	930
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	2 cut(s)	140, 146
BccI	CCATC	3 cut(s)	397, 770, 835
BciT130I	CCWGG	1 cut(s)	410
BclI	TGATCA	3 cut(s)	325, 691, 712
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	3 cut(s)	243, 276, 772
BfaI	CTAG	2 cut(s)	258, 432
BfmI	CTRYAG	3 cut(s)	190, 789, 918
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	3 cut(s)	135, 154, 226
BlpI	GCTNAGC	2 cut(s)	492, 519
BlsI	GCNGC	3 cut(s)	136, 155, 227
Bme1390I	CCNGG	2 cut(s)	410, 444
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	140
BmrFI	CCNGG	2 cut(s)	410, 444
BmsI	GCATC	2 cut(s)	121, 566
BpiI	GAAGAC	1 cut(s)	930
BpmI	CTGGAG	2 cut(s)	754, 895
Bpu10I	CCTNAGC	1 cut(s)	941
Bpu1102I	GCTNAGC	2 cut(s)	492, 519
BpuEI	CTTGAG	2 cut(s)	198, 956
BpuMI	CCSGG	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	864, 894
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 893, 961
Bse1I	ACTGG	1 cut(s)	771
Bse21I	CCTNAGG	1 cut(s)	960
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	4 cut(s)	27, 56, 822, 823
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	149, 893, 961
BseMII	CTCAG	3 cut(s)	486, 506, 510
BseNI	ACTGG	1 cut(s)	771
BseRI	GAGGAG	1 cut(s)	555
BseSI	GKGCMC	2 cut(s)	409, 590
BseXI	GCAGC	2 cut(s)	140, 146
BshFI	GGCC	3 cut(s)	142, 163, 228
BsiHKAI	GWGCWC	1 cut(s)	757
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	149, 893, 961
BsmAI	GTCTC	3 cut(s)	243, 276, 772
BsnI	GGCC	3 cut(s)	142, 163, 228
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	3 cut(s)	409, 590, 757
Bsp1720I	GCTNAGC	2 cut(s)	492, 519
BspACI	CCGC	2 cut(s)	225, 748
BspANI	GGCC	3 cut(s)	142, 163, 228
BspCNI	CTCAG	3 cut(s)	485, 505, 511
BspHI	TCATGA	1 cut(s)	322
BspPI	GGATC	4 cut(s)	327, 434, 526, 939
BsrI	ACTGG	1 cut(s)	771
BssECI	CCNNGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	15, 468
BstDEI	CTNAG	7 cut(s)	263, 472, 480, 492, 519, 941, 960
BstEII	GGTNACC	1 cut(s)	950
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	4 cut(s)	27, 56, 822, 823
BstMAI	GTCTC	3 cut(s)	243, 276, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	410
BstPI	GGTNACC	1 cut(s)	950
BstSCI	CCNGG	2 cut(s)	408, 442
BstSFI	CTRYAG	3 cut(s)	190, 789, 918
BstSLI	GKGCMC	2 cut(s)	409, 590
BstV1I	GCAGC	2 cut(s)	140, 146
BstV2I	GAAGAC	1 cut(s)	930
BstX2I	RGATCY	2 cut(s)	170, 931
BstYI	RGATCY	2 cut(s)	170, 931
Bsu36I	CCTNAGG	1 cut(s)	960
BsuRI	GGCC	3 cut(s)	142, 163, 228
BtsCI	GGATG	4 cut(s)	27, 56, 822, 823
BtsIMutI	CAGTG	1 cut(s)	778
CaiI	CAGNNNCTG	2 cut(s)	189, 860
CciI	TCATGA	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	759, 872
CviAII	CATG	6 cut(s)	74, 105, 232, 323, 501, 698
CviQI	GTAC	2 cut(s)	759, 872
DdeI	CTNAG	7 cut(s)	263, 472, 480, 492, 519, 941, 960
EaeI	YGGCCR	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	912
Eco81I	CCTNAGG	1 cut(s)	960
Eco88I	CYCGRG	1 cut(s)	49
Eco91I	GGTNACC	1 cut(s)	950
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	950
EcoRII	CCWGG	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	599
FaeI	CATG	6 cut(s)	77, 108, 235, 326, 504, 701
FatI	CATG	6 cut(s)	73, 104, 231, 322, 500, 697
FauNDI	CATATG	1 cut(s)	158
FbaI	TGATCA	3 cut(s)	325, 691, 712
Fnu4HI	GCNGC	3 cut(s)	135, 154, 226
FokI	GGATG	4 cut(s)	34, 43, 809, 830
Fsp4HI	GCNGC	3 cut(s)	135, 154, 226
FspBI	CTAG	2 cut(s)	258, 432
GluI	GCNGC	3 cut(s)	135, 154, 226
GsuI	CTGGAG	2 cut(s)	754, 895
HaeIII	GGCC	3 cut(s)	142, 163, 228
HapII	CCGG	1 cut(s)	444
Hin1II	CATG	6 cut(s)	77, 108, 235, 326, 504, 701
HindIII	AAGCTT	2 cut(s)	117, 482
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	3 cut(s)	701, 791, 962
Hpy166II	GTNNAC	3 cut(s)	38, 241, 415
Hpy188I	TCNGA	3 cut(s)	149, 168, 439
Hpy188III	TCNNGA	5 cut(s)	65, 317, 323, 651, 935
Hpy8I	GTNNAC	3 cut(s)	38, 241, 415
HpyAV	CCTTC	6 cut(s)	302, 314, 549, 629, 850, 887
HpyCH4III	ACNGT	2 cut(s)	15, 468
HpyCH4V	TGCA	6 cut(s)	134, 156, 183, 455, 557, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	7 cut(s)	263, 472, 480, 492, 519, 941, 960
Hsp92II	CATG	6 cut(s)	77, 108, 235, 326, 504, 701
Ksp22I	TGATCA	3 cut(s)	325, 691, 712
LmnI	GCTCC	1 cut(s)	914
Lsp1109I	GCAGC	2 cut(s)	140, 146
LweI	GCATC	2 cut(s)	121, 566
MaeI	CTAG	2 cut(s)	258, 432
MaeIII	GTNAC	2 cut(s)	834, 950
MflI	RGATCY	2 cut(s)	170, 931
MhlI	GDGCHC	3 cut(s)	409, 590, 757
MluCI	AATT	6 cut(s)	383, 511, 718, 736, 902, 966
MmeI	TCCRAC	1 cut(s)	907
MnlI	CCTC	6 cut(s)	143, 153, 174, 481, 576, 778
MseI	TTAA	2 cut(s)	969, 975
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	2 cut(s)	750, 890
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	2 cut(s)	410, 444
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	444
NdeI	CATATG	1 cut(s)	158
NlaIII	CATG	6 cut(s)	77, 108, 235, 326, 504, 701
NmuCI	GTSAC	1 cut(s)	950
PaeR7I	CTCGAG	1 cut(s)	49
PagI	TCATGA	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	136, 155, 227
Psp6I	CCWGG	1 cut(s)	408
PspEI	GGTNACC	1 cut(s)	950
PspGI	CCWGG	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	140
PspXI	VCTCGAGB	1 cut(s)	49
PstNI	CAGNNNCTG	2 cut(s)	189, 860
PsuI	RGATCY	2 cut(s)	170, 931
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	2 cut(s)	760, 873
RsaNI	GTAC	2 cut(s)	759, 872
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	969, 975
SatI	GCNGC	3 cut(s)	135, 154, 226
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	410, 444
SduI	GDGCHC	3 cut(s)	409, 590, 757
SfaNI	GCATC	2 cut(s)	121, 566
SfcI	CTRYAG	3 cut(s)	190, 789, 918
Sfr274I	CTCGAG	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	3 cut(s)	49, 213, 935
SmoI	CTYRAG	3 cut(s)	49, 213, 935
Sse9I	AATT	6 cut(s)	383, 511, 718, 736, 902, 966
SsiI	CCGC	2 cut(s)	225, 748
SspI	AATATT	1 cut(s)	665
SspMI	CTAG	2 cut(s)	258, 432
StyD4I	CCNGG	2 cut(s)	408, 442
TaaI	ACNGT	2 cut(s)	15, 468
TaqI	TCGA	2 cut(s)	50, 650
TaqII	GACCGA	1 cut(s)	969
TasI	AATT	6 cut(s)	383, 511, 718, 736, 902, 966
TatI	WGTACW	1 cut(s)	871
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	969, 975
Tru9I	TTAA	2 cut(s)	969, 975
TscAI	CASTG	1 cut(s)	778
TseFI	GTSAC	1 cut(s)	950
TseI	GCWGC	2 cut(s)	134, 153
Tsp45I	GTSAC	1 cut(s)	950
TspDTI	ATGAA	5 cut(s)	45, 93, 248, 296, 351
TspGWI	ACGGA	2 cut(s)	194, 830
TspRI	CASTG	1 cut(s)	778
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	736, 902
XhoI	CTCGAG	1 cut(s)	49
XspI	CTAG	2 cut(s)	258, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.