Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015882

Physical Location & Seq

Genomic Coordinates Reverse (-)

22146067 .. 22147309

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1134600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTGGGCGAAGCGCAAACACAACGGCTTGAGTTCATCTAATCACGATCATCATCTTCAAGTGCCAATTTCAAACGATGATTCATGGGAAGAACAAGCTTTCGCCGAAGATGCGGCAGGGCCTCTCGGAGGCTGCATATGGCCTCCGCGATCTTATTCTTGCAGTTTCTGTAGGAGAGAATTCCGTTCAGCTCAAGCTCTTGGTGGCCACATGAATGTTCACAGGAGAGACAGGGCTATACTAAAGCAGTCTCCAAATGACGAAACTGCCCGTCACAACCACCTTCATCATCATCAGGATCATGATCATTCTCTCCAAAATAGTGCTAATAATCCCTTTTCATCATCTTTGGGTAGTTTTCAATTCTCATCTCATCAAGTTTGTGCCCAGGTTTACAACCCTAAAAGCCCTATTGCAACATCATCACCGTCCTCAAGAGATCATATCAAAGGAGACAAGATTTCGAGAAAGGTGGAATCTAGTTCATGTAGGGAAAAGGGTGATCACCATGTCGCAAATAGTGATCTTAATTTATCTGTGAGTTTGAATTTGGTTGTCCGCTGTGAGCATACTTCTGCCTCCGATGACGGCGATGAAGCTATAGTTAGCAGCAAGAGGAGAAAAACGGATGACGTCCCATCATCGATACCCTTCTTCCTAAAATCAGGATCTGTTGATAAAGTGCATCATGTCCAATCAGCTGAAGGGTTTGAAATTAGCTCCAGCTCCATAGAAGACTTAGATCTTGAGCTCAGGCTTGGTGACCGACCTAAGGTAATTAAAGTTCATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

265

Amino Acids

29.37

Weight (kDa)

6.87

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37740
fragaria_vesca	FvH4_6g13130
malus_domestica	MD04G1134600.v1.1 MD12G1148100.v1.1
prunus_persica	Prupe.6G260700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0465501
rosa_laevigata	RLG00000024638 RLG00000025445
rosa_multiflora	Rmu_sc0001712.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415010
rosa_rugosa	Rorug03G0077000
rosa_samantha	Rh3BG142400 Rh3CG143600 Rh3DG143500
rosa_wichuraiana	Rw3G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	636
AccII	CGCG	1 cut(s)	148
AciI	CCGC	3 cut(s)	113, 146, 559
AclWI	GGATC	2 cut(s)	306, 676
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	179, 547
AcuI	CTGAAG	1 cut(s)	723
AcyI	GRCGYC	1 cut(s)	633
AfiI	CCNNNNNNNGG	2 cut(s)	128, 772
AgsI	TTSAA	5 cut(s)	59, 72, 362, 547, 713
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	8 cut(s)	98, 191, 197, 599, 701, 720, 726, 751
AluI	AGCT	8 cut(s)	98, 191, 197, 599, 701, 720, 726, 751
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	3 cut(s)	222, 255, 447
AlwI	GGATC	2 cut(s)	306, 676
AlwNI	CAGNNNCTG	2 cut(s)	168, 671
AoxI	GGCC	3 cut(s)	119, 140, 205
ApeKI	GCWGC	2 cut(s)	132, 609
ApoI	RAATTY	2 cut(s)	179, 547
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	4 cut(s)	417, 497, 512, 773
AxyI	CCTNAGG	1 cut(s)	771
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	753
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	2 cut(s)	119, 621
BccI	CCATC	1 cut(s)	646
BceAI	ACGGC	2 cut(s)	40, 604
BciT130I	CCWGG	1 cut(s)	389
BclI	TGATCA	2 cut(s)	304, 502
BcoDI	GTCTC	3 cut(s)	222, 255, 447
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	2 cut(s)	169, 600
BglII	AGATCT	1 cut(s)	742
BisI	GCNGC	3 cut(s)	114, 133, 610
BlsI	GCNGC	3 cut(s)	115, 134, 611
Bme1390I	CCNGG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	100, 694
BpiI	GAAGAC	1 cut(s)	741
BpmI	CTGGAG	1 cut(s)	706
Bpu10I	CCTNAGC	1 cut(s)	752
BpuEI	CTTGAG	4 cut(s)	49, 177, 418, 767
Bsa29I	ATCGAT	1 cut(s)	644
BsaBI	GATNNNNATC	2 cut(s)	51, 303
BsaHI	GRCGYC	1 cut(s)	633
BsaJI	CCNNGG	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 772
Bse21I	CCTNAGG	1 cut(s)	771
Bse8I	GATNNNNATC	2 cut(s)	51, 303
BseBI	CCWGG	1 cut(s)	389
BseCI	ATCGAT	1 cut(s)	644
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	634
BseJI	GATNNNNATC	2 cut(s)	51, 303
BseLI	CCNNNNNNNGG	2 cut(s)	128, 772
BseMII	CTCAG	1 cut(s)	766
BseRI	GAGGAG	1 cut(s)	631
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	119, 621
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	121, 142, 207
BshVI	ATCGAT	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	2 cut(s)	128, 772
BsmAI	GTCTC	3 cut(s)	222, 255, 447
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	3 cut(s)	121, 142, 207
Bsp1286I	GDGCHC	2 cut(s)	388, 753
Bsp143I	GATC	9 cut(s)	46, 149, 298, 304, 439, 502, 523, 668, 742
BspACI	CCGC	3 cut(s)	113, 146, 559
BspANI	GGCC	3 cut(s)	121, 142, 207
BspCNI	CTCAG	1 cut(s)	765
BspDI	ATCGAT	1 cut(s)	644
BspFNI	CGCG	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	301
BspPI	GGATC	2 cut(s)	306, 676
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	9 cut(s)	46, 149, 298, 304, 439, 502, 523, 668, 742
BssNI	GRCGYC	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	429
BstACI	GRCGYC	1 cut(s)	633
BstDEI	CTNAG	3 cut(s)	739, 752, 771
BstEII	GGTNACC	1 cut(s)	761
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	9 cut(s)	49, 152, 301, 307, 442, 505, 526, 671, 745
BstMAI	GTCTC	3 cut(s)	222, 255, 447
BstMBI	GATC	9 cut(s)	46, 149, 298, 304, 439, 502, 523, 668, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	389
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	2 cut(s)	169, 600
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	119, 621
BstV2I	GAAGAC	1 cut(s)	741
BstX2I	RGATCY	2 cut(s)	668, 742
BstYI	RGATCY	2 cut(s)	668, 742
Bsu15I	ATCGAT	1 cut(s)	644
Bsu36I	CCTNAGG	1 cut(s)	771
BsuRI	GGCC	3 cut(s)	121, 142, 207
BsuTUI	ATCGAT	1 cut(s)	644
BtgZI	GCGATG	1 cut(s)	606
BtsCI	GGATG	1 cut(s)	634
CaiI	CAGNNNCTG	2 cut(s)	168, 671
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	119
ClaI	ATCGAT	1 cut(s)	644
CviAII	CATG	6 cut(s)	84, 211, 302, 486, 509, 689
DdeI	CTNAG	3 cut(s)	739, 752, 771
DpnI	GATC	9 cut(s)	48, 151, 300, 306, 441, 504, 525, 670, 744
DpnII	GATC	9 cut(s)	46, 149, 298, 304, 439, 502, 523, 668, 742
EaeI	YGGCCR	1 cut(s)	205
Ecl136II	GAGCTC	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	753
Eco53kI	GAGCTC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	723
Eco81I	CCTNAGG	1 cut(s)	771
Eco91I	GGTNACC	1 cut(s)	761
EcoICRI	GAGCTC	1 cut(s)	751
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	753
FaeI	CATG	6 cut(s)	87, 214, 305, 489, 512, 692
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	6 cut(s)	83, 210, 301, 485, 508, 688
FauNDI	CATATG	1 cut(s)	137
FbaI	TGATCA	2 cut(s)	304, 502
Fnu4HI	GCNGC	3 cut(s)	114, 133, 610
FokI	GGATG	1 cut(s)	641
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	3 cut(s)	114, 133, 610
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	3 cut(s)	114, 133, 610
GsuI	CTGGAG	1 cut(s)	706
HaeIII	GGCC	3 cut(s)	121, 142, 207
HhaI	GCGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	6 cut(s)	87, 214, 305, 489, 512, 692
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	2 cut(s)	80, 476
HphI	GGTGA	4 cut(s)	417, 497, 512, 773
Hpy166II	GTNNAC	2 cut(s)	220, 394
Hpy188I	TCNGA	2 cut(s)	128, 583
Hpy188III	TCNNGA	7 cut(s)	44, 296, 302, 435, 465, 666, 746
Hpy8I	GTNNAC	2 cut(s)	220, 394
HpyAV	CCTTC	3 cut(s)	293, 661, 698
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	4 cut(s)	135, 162, 416, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	3 cut(s)	739, 752, 771
HpySE526I	ACGT	1 cut(s)	633
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	6 cut(s)	87, 214, 305, 489, 512, 692
HspAI	GCGC	1 cut(s)	13
Ksp22I	TGATCA	2 cut(s)	304, 502
Kzo9I	GATC	9 cut(s)	46, 149, 298, 304, 439, 502, 523, 668, 742
LmnI	GCTCC	2 cut(s)	725, 731
LpnPI	CCDG	9 cut(s)	102, 208, 217, 281, 374, 401, 651, 736, 739
Lsp1109I	GCAGC	2 cut(s)	119, 621
LweI	GCATC	2 cut(s)	100, 694
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	2 cut(s)	272, 761
MalI	GATC	9 cut(s)	48, 151, 300, 306, 441, 504, 525, 670, 744
MboI	GATC	9 cut(s)	46, 149, 298, 304, 439, 502, 523, 668, 742
MboII	GAAGA	5 cut(s)	47, 101, 119, 646, 746
MflI	RGATCY	2 cut(s)	668, 742
MhlI	GDGCHC	2 cut(s)	388, 753
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	7 cut(s)	66, 179, 362, 529, 547, 714, 777
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	6 cut(s)	122, 132, 153, 442, 589, 609
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	2 cut(s)	528, 780
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	207
MspA1I	CMGCKG	2 cut(s)	561, 701
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeI	CATATG	1 cut(s)	137
NdeII	GATC	9 cut(s)	46, 149, 298, 304, 439, 502, 523, 668, 742
NlaIII	CATG	6 cut(s)	87, 214, 305, 489, 512, 692
NmuCI	GTSAC	2 cut(s)	272, 761
PagI	TCATGA	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	80, 476
PkrI	GCNGC	3 cut(s)	115, 134, 611
Psp124BI	GAGCTC	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	387
PspEI	GGTNACC	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	119
PsrI	GAACNNNNNNTAC	1 cut(s)	768
PstNI	CAGNNNCTG	2 cut(s)	168, 671
PsuI	RGATCY	2 cut(s)	668, 742
PvuII	CAGCTG	1 cut(s)	701
RseI	CAYNNNNRTG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	528, 780
SatI	GCNGC	3 cut(s)	114, 133, 610
Sau3AI	GATC	9 cut(s)	46, 149, 298, 304, 439, 502, 523, 668, 742
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	388, 753
SfaNI	GCATC	2 cut(s)	100, 694
SfcI	CTRYAG	2 cut(s)	169, 600
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	4 cut(s)	28, 192, 433, 746
SmoI	CTYRAG	4 cut(s)	28, 192, 433, 746
Sse9I	AATT	7 cut(s)	66, 179, 362, 529, 547, 714, 777
SsiI	CCGC	3 cut(s)	113, 146, 559
SspMI	CTAG	1 cut(s)	480
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	2 cut(s)	464, 644
TaqII	GACCGA	1 cut(s)	780
TasI	AATT	7 cut(s)	66, 179, 362, 529, 547, 714, 777
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	80, 476
Tru1I	TTAA	2 cut(s)	528, 780
Tru9I	TTAA	2 cut(s)	528, 780
TseFI	GTSAC	2 cut(s)	272, 761
TseI	GCWGC	2 cut(s)	132, 609
Tsp45I	GTSAC	2 cut(s)	272, 761
TspDTI	ATGAA	8 cut(s)	24, 72, 227, 275, 330, 474, 609, 776
TspGWI	ACGGA	2 cut(s)	173, 641
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	2 cut(s)	179, 547
XspI	CTAG	1 cut(s)	480
ZraI	GACGTC	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.