Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015882

Physical Location & Seq

Genomic Coordinates Reverse (-)

25116397 .. 25117380

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G260700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAACAAGCAAGGTACTGGATGTGGGCAAAGCGCAAGCACAATAGTTTGAGCTCATCTCAGCATGATCATCTGCAAGTGCCAATTAGCAACCCATCAAACGATGATTCGTGGGAAGAACAAGCTTTCGCGGAAGATGCGGCCGGGCCTCTTGGAGGGTGCATATGGCCTCCGAGATCTTACTCTTGTAGCTTTTGCAGGAGAGAGTTCCGTTCAGCTCAAGCTCTAGGTGGCCACATGAATGTCCACAGGAGAGACAGGGCTAGACTAAAGCAGTCTCCAAATGACGAAACTACCCTCCAAAATCATCATCATCCGGATGATCGTTCTGTCCAAAATCATAATCCCTTCTCCTCTTCATCTTTGGGTAGTTTTCAATACCCATCTCATCAAGTTTGTGCCTTGGTTTACAACCCTAATAACCCTAGTTCCGATCCCGGTGCTACTATTGCATCCTCATCACCATCCTCAGGTTCTAGGGTTTCAGCTCAATTACCATGTAAAGAAAATTGTGCTGACCAAACCCTGAAGATCCCACCTTCTTCTTCTGCTTCTCTATCTTTTCCTCAATCTTGGTCAATCTTGGGCACAAACAGAAATAATTATGATAAATCTGTTGCAAGAAATATTATTGAAGCTGAGAAGATTTCAGAAGCTGTGGAATCCGGGTGTAGGGCTAAGGGTGATCACCATGTCACAAGTACTACTGATCTTCACAATTTGTCTGTGAGTTTGAATTTGGTTGTTCGTTGTGCTCGTCCATCCGTCTCAGGTGATGAGGATAAAGCTATAATTAGTTGCAAGAGAAGAAGAACGGAAGACGTCCCGTCATCGACACCTTTCTTCCTAAAATCAGGTTCTGTTGATAAAGTACATCATCTCCAATCAGAAGGGTTTGAACTTAGCTGCACCAGCTCTATAGAGGACTTAGATCTTGAGCTCAGGCTCGGTGACCGGCCTAAGGTAATTAAAGTTGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

328

Amino Acids

36.16

Weight (kDa)

6.94

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37740
fragaria_vesca	FvH4_6g13130
malus_domestica	MD04G1134600.v1.1 MD12G1148100.v1.1
prunus_persica	Prupe.6G260700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0465501
rosa_laevigata	RLG00000024638 RLG00000025445
rosa_multiflora	Rmu_sc0001712.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415010
rosa_rugosa	Rorug03G0077000
rosa_samantha	Rh3BG142400 Rh3CG143600 Rh3DG143500
rosa_wichuraiana	Rw3G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	825
AccII	CGCG	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	2 cut(s)	131, 140
AclWI	GGATC	2 cut(s)	428, 526
AcoI	YGGCCR	2 cut(s)	141, 232
AcsI	RAATTY	1 cut(s)	736
AcuI	CTGAAG	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	822
AfaI	GTAC	3 cut(s)	17, 703, 873
AfiI	CCNNNNNNNGG	4 cut(s)	155, 470, 672, 961
AgsI	TTSAA	4 cut(s)	377, 635, 736, 899
AhdI	GACNNNNNGTC	1 cut(s)	826
Alw21I	GWGCWC	3 cut(s)	56, 757, 942
Alw26I	GTCTC	3 cut(s)	249, 282, 772
AlwI	GGATC	2 cut(s)	428, 526
AlwNI	CAGNNNCTG	2 cut(s)	656, 860
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	5 cut(s)	141, 146, 167, 232, 956
ApeKI	GCWGC	1 cut(s)	906
ApoI	RAATTY	1 cut(s)	736
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	3 cut(s)	145, 438, 667
AsuHPI	GGTGA	5 cut(s)	453, 680, 695, 785, 962
AxyI	CCTNAGG	2 cut(s)	469, 960
BaeGI	GKGCMC	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	234
BanII	GRGCYC	2 cut(s)	56, 942
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	3 cut(s)	56, 757, 942
BbvI	GCAGC	1 cut(s)	893
BccI	CCATC	4 cut(s)	103, 391, 472, 769
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BclI	TGATCA	2 cut(s)	67, 685
BcnI	CCSGG	3 cut(s)	145, 438, 667
BcoDI	GTCTC	3 cut(s)	249, 282, 772
BfaI	CTAG	4 cut(s)	227, 264, 426, 477
BfmI	CTRYAG	1 cut(s)	918
BglII	AGATCT	2 cut(s)	176, 931
BisI	GCNGC	2 cut(s)	141, 907
BlsI	GCNGC	2 cut(s)	142, 908
BmcAI	AGTACT	1 cut(s)	703
Bme1390I	CCNGG	3 cut(s)	145, 438, 667
BmeRI	GACNNNNNGTC	1 cut(s)	826
BmgT120I	GGNCC	1 cut(s)	146
BmrFI	CCNGG	3 cut(s)	145, 438, 667
BmsI	GCATC	2 cut(s)	127, 461
BpiI	GAAGAC	1 cut(s)	825
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
Bpu10I	CCTNAGC	2 cut(s)	678, 941
BpuEI	CTTGAG	2 cut(s)	204, 956
BpuMI	CCSGG	3 cut(s)	145, 438, 667
BsaHI	GRCGYC	1 cut(s)	822
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	864, 894
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 470, 672, 961
Bse118I	RCCGGY	1 cut(s)	954
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	2 cut(s)	469, 960
BseAI	TCCGGA	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	6 cut(s)	27, 313, 325, 452, 464, 761
BseLI	CCNNNNNNNGG	4 cut(s)	155, 470, 672, 961
BseMII	CTCAG	5 cut(s)	74, 483, 630, 783, 955
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	590
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	893
BsgI	GTGCAG	1 cut(s)	892
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	5 cut(s)	143, 148, 169, 234, 958
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	3 cut(s)	56, 757, 942
BsiSI	CCGG	5 cut(s)	144, 317, 438, 666, 955
BslFI	GGGAC	1 cut(s)	809
BslI	CCNNNNNNNGG	4 cut(s)	155, 470, 672, 961
BsmAI	GTCTC	3 cut(s)	249, 282, 772
BsmBI	CGTCTC	1 cut(s)	772
BsmFI	GGGAC	1 cut(s)	809
BsnI	GGCC	5 cut(s)	143, 148, 169, 234, 958
Bsp1286I	GDGCHC	4 cut(s)	56, 590, 757, 942
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	8 cut(s)	67, 176, 322, 433, 531, 685, 709, 931
BspACI	CCGC	2 cut(s)	131, 140
BspANI	GGCC	5 cut(s)	143, 148, 169, 234, 958
BspCNI	CTCAG	5 cut(s)	73, 482, 631, 782, 954
BspEI	TCCGGA	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	131
BspPI	GGATC	2 cut(s)	428, 526
BsrFI	RCCGGY	1 cut(s)	954
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	954
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	8 cut(s)	67, 176, 322, 433, 531, 685, 709, 931
BssNI	GRCGYC	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	822
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	9 cut(s)	60, 469, 639, 678, 769, 902, 928, 941, 960
BstEII	GGTNACC	1 cut(s)	950
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	6 cut(s)	27, 313, 325, 452, 464, 761
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	8 cut(s)	70, 179, 325, 436, 534, 688, 712, 934
BstMAI	GTCTC	3 cut(s)	249, 282, 772
BstMBI	GATC	8 cut(s)	67, 176, 322, 433, 531, 685, 709, 931
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 449, 912
BstPI	GGTNACC	1 cut(s)	950
BstSCI	CCNGG	3 cut(s)	143, 436, 665
BstSFI	CTRYAG	1 cut(s)	918
BstSLI	GKGCMC	1 cut(s)	590
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	893
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	3 cut(s)	176, 531, 931
BstYI	RGATCY	3 cut(s)	176, 531, 931
BstZI	CGGCCG	1 cut(s)	141
Bsu36I	CCTNAGG	2 cut(s)	469, 960
BsuRI	GGCC	5 cut(s)	143, 148, 169, 234, 958
BtsCI	GGATG	6 cut(s)	27, 313, 325, 452, 464, 761
Cac8I	GCNNGC	1 cut(s)	38
CaiI	CAGNNNCTG	2 cut(s)	656, 860
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	954
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	16, 702, 872
CviAII	CATG	4 cut(s)	65, 238, 498, 692
CviQI	GTAC	3 cut(s)	16, 702, 872
DdeI	CTNAG	9 cut(s)	60, 469, 639, 678, 769, 902, 928, 941, 960
DpnI	GATC	8 cut(s)	69, 178, 324, 435, 533, 687, 711, 933
DpnII	GATC	8 cut(s)	67, 176, 322, 433, 531, 685, 709, 931
DriI	GACNNNNNGTC	1 cut(s)	826
EaeI	YGGCCR	2 cut(s)	141, 232
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	361
Eam1105I	GACNNNNNGTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	361
Ecl136II	GAGCTC	2 cut(s)	54, 940
EclXI	CGGCCG	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	2 cut(s)	56, 942
Eco52I	CGGCCG	1 cut(s)	141
Eco53kI	GAGCTC	2 cut(s)	54, 940
Eco57I	CTGAAG	1 cut(s)	548
Eco81I	CCTNAGG	2 cut(s)	469, 960
Eco91I	GGTNACC	1 cut(s)	950
EcoICRI	GAGCTC	2 cut(s)	54, 940
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	950
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	2 cut(s)	56, 942
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	772
FaeI	CATG	4 cut(s)	68, 241, 501, 695
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	4 cut(s)	64, 237, 497, 691
FauNDI	CATATG	1 cut(s)	164
FbaI	TGATCA	2 cut(s)	67, 685
Fnu4HI	GCNGC	2 cut(s)	141, 907
FokI	GGATG	6 cut(s)	34, 300, 332, 439, 451, 748
FriOI	GRGCYC	2 cut(s)	56, 942
Fsp4HI	GCNGC	2 cut(s)	141, 907
FspBI	CTAG	4 cut(s)	227, 264, 426, 477
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	141, 907
HaeIII	GGCC	5 cut(s)	143, 148, 169, 234, 958
HapII	CCGG	5 cut(s)	144, 317, 438, 666, 955
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	822
Hin1II	CATG	4 cut(s)	68, 241, 501, 695
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	2 cut(s)	107, 662
HpaII	CCGG	5 cut(s)	144, 317, 438, 666, 955
HphI	GGTGA	5 cut(s)	453, 680, 695, 785, 962
Hpy166II	GTNNAC	2 cut(s)	247, 409
Hpy188I	TCNGA	4 cut(s)	174, 433, 652, 889
Hpy188III	TCNNGA	2 cut(s)	317, 935
Hpy8I	GTNNAC	2 cut(s)	247, 409
HpyAV	CCTTC	3 cut(s)	358, 549, 884
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	7 cut(s)	76, 162, 198, 452, 620, 801, 909
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 449, 912
HpyF3I	CTNAG	9 cut(s)	60, 469, 639, 678, 769, 902, 928, 941, 960
HpySE526I	ACGT	1 cut(s)	822
Hsp92I	GRCGYC	1 cut(s)	822
Hsp92II	CATG	4 cut(s)	68, 241, 501, 695
HspAI	GCGC	1 cut(s)	34
Kpn2I	TCCGGA	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	67, 685
Kzo9I	GATC	8 cut(s)	67, 176, 322, 433, 531, 685, 709, 931
Lsp1109I	GCAGC	1 cut(s)	893
LweI	GCATC	2 cut(s)	127, 461
MaeI	CTAG	4 cut(s)	227, 264, 426, 477
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	2 cut(s)	694, 950
MalI	GATC	8 cut(s)	69, 178, 324, 435, 533, 687, 711, 933
MboI	GATC	8 cut(s)	67, 176, 322, 433, 531, 685, 709, 931
MflI	RGATCY	3 cut(s)	176, 531, 931
MhlI	GDGCHC	4 cut(s)	56, 590, 757, 942
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	8 cut(s)	84, 491, 508, 601, 718, 736, 792, 966
MluNI	TGGCCA	1 cut(s)	234
Mox20I	TGGCCA	1 cut(s)	234
MroI	TCCGGA	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	1 cut(s)	969
MslI	CAYNNNNRTG	2 cut(s)	240, 318
Msp20I	TGGCCA	1 cut(s)	234
MspI	CCGG	5 cut(s)	144, 317, 438, 666, 955
MspR9I	CCNGG	3 cut(s)	145, 438, 667
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	137, 449, 912
NciI	CCSGG	3 cut(s)	145, 438, 667
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	8 cut(s)	67, 176, 322, 433, 531, 685, 709, 931
NlaIII	CATG	4 cut(s)	68, 241, 501, 695
NmuCI	GTSAC	2 cut(s)	694, 950
PcsI	WCGNNNNNNNCGW	1 cut(s)	754
PfeI	GAWTC	2 cut(s)	107, 662
PkrI	GCNGC	2 cut(s)	142, 908
Psp124BI	GAGCTC	2 cut(s)	56, 942
PspEI	GGTNACC	1 cut(s)	950
PspPI	GGNCC	1 cut(s)	146
PstNI	CAGNNNCTG	2 cut(s)	656, 860
PsuI	RGATCY	3 cut(s)	176, 531, 931
RsaI	GTAC	3 cut(s)	17, 703, 873
RsaNI	GTAC	3 cut(s)	16, 702, 872
RseI	CAYNNNNRTG	2 cut(s)	240, 318
SacI	GAGCTC	2 cut(s)	56, 942
SaqAI	TTAA	1 cut(s)	969
SatI	GCNGC	2 cut(s)	141, 907
Sau3AI	GATC	8 cut(s)	67, 176, 322, 433, 531, 685, 709, 931
Sau96I	GGNCC	1 cut(s)	146
ScaI	AGTACT	1 cut(s)	703
ScrFI	CCNGG	3 cut(s)	145, 438, 667
SduI	GDGCHC	4 cut(s)	56, 590, 757, 942
SfaNI	GCATC	2 cut(s)	127, 461
SfcI	CTRYAG	1 cut(s)	918
SmiMI	CAYNNNNRTG	2 cut(s)	240, 318
SmlI	CTYRAG	2 cut(s)	219, 935
SmoI	CTYRAG	2 cut(s)	219, 935
Sse9I	AATT	8 cut(s)	84, 491, 508, 601, 718, 736, 792, 966
SsiI	CCGC	2 cut(s)	131, 140
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	4 cut(s)	227, 264, 426, 477
SstI	GAGCTC	2 cut(s)	56, 942
StyD4I	CCNGG	3 cut(s)	143, 436, 665
StyI	CCWWGG	1 cut(s)	402
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	1 cut(s)	833
TasI	AATT	8 cut(s)	84, 491, 508, 601, 718, 736, 792, 966
TatI	WGTACW	2 cut(s)	701, 871
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	107, 662
Tru1I	TTAA	1 cut(s)	969
Tru9I	TTAA	1 cut(s)	969
TseFI	GTSAC	2 cut(s)	694, 950
TseI	GCWGC	1 cut(s)	906
Tsp45I	GTSAC	2 cut(s)	694, 950
TspDTI	ATGAA	2 cut(s)	254, 348
TspGWI	ACGGA	3 cut(s)	200, 754, 830
XagI	CCTNNNNNAGG	1 cut(s)	153
XapI	RAATTY	1 cut(s)	736
XspI	CTAG	4 cut(s)	227, 264, 426, 477
ZraI	GACGTC	1 cut(s)	823
ZrmI	AGTACT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.