Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015882

Physical Location & Seq

Genomic Coordinates Reverse (-)

37248762 .. 37249694

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGCAAGCACGGTACTGGATGTGGGCAAAGCGCAAGCACAGTAGTCTGATGAGTGCTTCTCATGAAGTTCAGGTGCCTTCCAATGACGAATCGTCGTGGGAAGAACAAGCTTTCGCAGAAGATGCAGCGGGGCCTCTCGGAGGTTGCATATGGCCACCGAGATCTTATTCCTGCAGCTTCTGCAGGAGAGAGTTTCGTTCTGCTCAAGCTCTTGGCGGCCACATGAATGTCCACAGGAGAGACAGAGCTAGACTCAAGCAGTCTCCCAATAATGACCAAAATGTCGAAACTGCCCATCAGCATCAGAATCATCAGGATATCTCTGTCCAAATCAATCCCTTCTCATCATCTCTGGGCACTTTTCATCAATACCCATCTCATCATCAAGTTTGTGCCTTGGTTTATAACCCTAGTTCAGATCCTCCCTCATTGCCTTCTAGGGTTTCGGCTCAATTACCAGGTAAAGATCAAAATTGTGGTCAAGAGCAAATTACCTTGAATATCCCAACTTCTAGGTCATCCTCTGTATCATCTCCTCCGTCCAGGTCATTCTTGACCGCAAATAGATATTATAATAACTCTGTTGCAAGAAAGACTGAAGCTGCAGAGAAGATCTCGAGAATTGTGGAATCTGGGTCATGTAGGGCTAATAAGGGTGCTGATTATGTTACAACTGATTTGTCTGTGAGTTTGAATTTGGTCGTCCGCTGTGCTCGTCCATCTGTGTCAGCTGGTGGTGATGAAGATGAAGCTATCATTAGTTGCAAGAGAAGAAGAATAATGGAGGAGAAGCAATCATCCGAAGATTCTTTACCTTTTTTCCTAAAATCGGAGGGTTTTGAAGTACTTAGCCGCCCCAGCTCGATTGAAGAGTTGGATCTTGAGCTCAGGCTCGGAGACCGGCCTAAGGTAATCAAAGTAGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

310

Amino Acids

34.64

Weight (kDa)

7.64

Isoelectric Point (pI)

69.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37740
fragaria_vesca	FvH4_6g13130
malus_domestica	MD04G1134600.v1.1 MD12G1148100.v1.1
prunus_persica	Prupe.6G260700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0465501
rosa_laevigata	RLG00000024638 RLG00000025445
rosa_multiflora	Rmu_sc0001712.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415010
rosa_rugosa	Rorug03G0077000
rosa_samantha	Rh3BG142400 Rh3CG143600 Rh3DG143500
rosa_wichuraiana	Rw3G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	408, 576
AasI	GACNNNNNNGTC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	5 cut(s)	131, 219, 561, 709, 856
AclWI	GGATC	2 cut(s)	416, 888
AcoI	YGGCCR	2 cut(s)	155, 220
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	2 cut(s)	17, 849
AfiI	CCNNNNNNNGG	3 cut(s)	143, 832, 910
AgsI	TTSAA	4 cut(s)	502, 697, 845, 872
AhdI	GACNNNNNGTC	1 cut(s)	94
AjnI	CCWGG	2 cut(s)	460, 545
AluBI	AGCT	9 cut(s)	113, 180, 212, 251, 605, 734, 755, 864, 889
AluI	AGCT	9 cut(s)	113, 180, 212, 251, 605, 734, 755, 864, 889
Alw21I	GWGCWC	2 cut(s)	718, 891
Alw26I	GTCTC	3 cut(s)	237, 270, 894
AlwI	GGATC	2 cut(s)	416, 888
AlwNI	CAGNNNCTG	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	619
AoxI	GGCC	4 cut(s)	134, 155, 220, 905
ApeKI	GCWGC	3 cut(s)	128, 177, 605
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	2 cut(s)	466, 498
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	752
AvaI	CYCGRG	1 cut(s)	619
AxyI	CCTNAGG	1 cut(s)	909
BaeGI	GKGCMC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	891
BarI	GAAGNNNNNNTAC	2 cut(s)	798, 830
Bbv12I	GWGCWC	2 cut(s)	718, 891
BbvI	GCAGC	3 cut(s)	140, 189, 592
BccI	CCATC	3 cut(s)	306, 385, 730
BciT130I	CCWGG	2 cut(s)	462, 547
BcoDI	GTCTC	3 cut(s)	237, 270, 894
BfaI	CTAG	4 cut(s)	252, 414, 441, 516
BfmI	CTRYAG	3 cut(s)	175, 184, 606
BglII	AGATCT	2 cut(s)	164, 615
BisI	GCNGC	5 cut(s)	129, 178, 220, 606, 856
BlsI	GCNGC	5 cut(s)	130, 179, 221, 607, 857
BmcAI	AGTACT	1 cut(s)	849
Bme1390I	CCNGG	2 cut(s)	462, 547
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	78, 135
BmrFI	CCNGG	2 cut(s)	462, 547
BmsI	GCATC	2 cut(s)	115, 313
BplI	GAGNNNNNCTC	6 cut(s)	46, 78, 240, 272, 602, 634
Bpu10I	CCTNAGC	1 cut(s)	890
BpuEI	CTTGAG	3 cut(s)	192, 242, 905
BsaI	GGTCTC	1 cut(s)	894
BsaJI	CCNNGG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 832, 910
Bse118I	RCCGGY	1 cut(s)	903
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	909
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	2 cut(s)	462, 547
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	3 cut(s)	27, 521, 800
BseLI	CCNNNNNNNGG	3 cut(s)	143, 832, 910
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	1 cut(s)	904
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	528, 803
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	140, 189, 592
BseYI	CCCAGC	1 cut(s)	860
BshFI	GGCC	4 cut(s)	136, 157, 222, 907
BshNI	GGYRCC	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	718, 891
BsiHKCI	CYCGRG	1 cut(s)	619
BsiSI	CCGG	1 cut(s)	904
BslI	CCNNNNNNNGG	3 cut(s)	143, 832, 910
BsmAI	GTCTC	3 cut(s)	237, 270, 894
BsnI	GGCC	4 cut(s)	136, 157, 222, 907
Bso31I	GGTCTC	1 cut(s)	894
BsoBI	CYCGRG	1 cut(s)	619
Bsp1286I	GDGCHC	3 cut(s)	362, 718, 891
Bsp143I	GATC	5 cut(s)	164, 421, 469, 615, 880
BspACI	CCGC	5 cut(s)	131, 219, 561, 709, 856
BspANI	GGCC	4 cut(s)	136, 157, 222, 907
BspCNI	CTCAG	1 cut(s)	903
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	78, 135
BspMAI	CTGCAG	3 cut(s)	179, 188, 610
BspPI	GGATC	2 cut(s)	416, 888
BspT107I	GGYRCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	894
BsrDI	GCAATG	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	903
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	903
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	5 cut(s)	164, 421, 469, 615, 880
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	462, 547
Bst4CI	ACNGT	2 cut(s)	15, 44
Bst6I	CTCTTC	1 cut(s)	867
BstAPI	GCANNNNNTGC	2 cut(s)	125, 183
BstC8I	GCNNGC	2 cut(s)	9, 38
BstDEI	CTNAG	3 cut(s)	851, 890, 909
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	3 cut(s)	27, 521, 800
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	5 cut(s)	167, 424, 472, 618, 883
BstMAI	GTCTC	3 cut(s)	237, 270, 894
BstMBI	GATC	5 cut(s)	164, 421, 469, 615, 880
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 183, 861
BstNI	CCWGG	2 cut(s)	462, 547
BstSCI	CCNGG	2 cut(s)	460, 545
BstSFI	CTRYAG	3 cut(s)	175, 184, 606
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	140, 189, 592
BstX2I	RGATCY	4 cut(s)	164, 421, 615, 880
BstYI	RGATCY	4 cut(s)	164, 421, 615, 880
Bsu36I	CCTNAGG	1 cut(s)	909
BsuRI	GGCC	4 cut(s)	136, 157, 222, 907
BtsCI	GGATG	3 cut(s)	27, 521, 800
Cac8I	GCNNGC	2 cut(s)	9, 38
CaiI	CAGNNNCTG	1 cut(s)	183
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	903
Cfr13I	GGNCC	1 cut(s)	134
CsiI	ACCWGGT	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	16, 848
CviAII	CATG	3 cut(s)	65, 226, 642
CviQI	GTAC	2 cut(s)	16, 848
DdeI	CTNAG	3 cut(s)	851, 890, 909
DpnI	GATC	5 cut(s)	166, 423, 471, 617, 882
DpnII	GATC	5 cut(s)	164, 421, 469, 615, 880
DrdI	GACNNNNNNGTC	1 cut(s)	284
DriI	GACNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	2 cut(s)	155, 220
Eam1104I	CTCTTC	1 cut(s)	867
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	867
Ecl136II	GAGCTC	1 cut(s)	889
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	891
Eco31I	GGTCTC	1 cut(s)	894
Eco32I	GATATC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	889
Eco57I	CTGAAG	1 cut(s)	621
Eco81I	CCTNAGG	1 cut(s)	909
Eco88I	CYCGRG	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	889
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	460, 545
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	891
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	3 cut(s)	68, 229, 645
FaiI	YATR	8 cut(s)	66, 152, 154, 227, 408, 576, 643, 669
FatI	CATG	3 cut(s)	64, 225, 641
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	152
Fnu4HI	GCNGC	5 cut(s)	129, 178, 220, 606, 856
FokI	GGATG	3 cut(s)	34, 508, 787
FriOI	GRGCYC	1 cut(s)	891
Fsp4HI	GCNGC	5 cut(s)	129, 178, 220, 606, 856
FspBI	CTAG	4 cut(s)	252, 414, 441, 516
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	5 cut(s)	129, 178, 220, 606, 856
GsaI	CCCAGC	1 cut(s)	864
HaeIII	GGCC	4 cut(s)	136, 157, 222, 907
HapII	CCGG	1 cut(s)	904
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	68, 229, 645
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	5 cut(s)	92, 255, 310, 632, 809
HpaII	CCGG	1 cut(s)	904
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	7 cut(s)	51, 143, 309, 421, 805, 835, 899
Hpy188III	TCNNGA	7 cut(s)	65, 317, 485, 556, 619, 621, 884
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	90, 352, 447
HpyCH4III	ACNGT	2 cut(s)	15, 44
HpyCH4V	TGCA	7 cut(s)	128, 150, 177, 186, 590, 608, 768
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 183, 861
HpyF3I	CTNAG	3 cut(s)	851, 890, 909
Hsp92II	CATG	3 cut(s)	68, 229, 645
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	164, 421, 469, 615, 880
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	3 cut(s)	140, 189, 592
LweI	GCATC	2 cut(s)	115, 313
MabI	ACCWGGT	1 cut(s)	460
MaeI	CTAG	4 cut(s)	252, 414, 441, 516
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	5 cut(s)	166, 423, 471, 617, 882
MboI	GATC	5 cut(s)	164, 421, 469, 615, 880
MboII	GAAGA	8 cut(s)	116, 134, 625, 758, 786, 789, 818, 884
MflI	RGATCY	4 cut(s)	164, 421, 615, 880
MhlI	GDGCHC	3 cut(s)	362, 718, 891
MlsI	TGGCCA	1 cut(s)	157
MluCI	AATT	5 cut(s)	455, 475, 492, 624, 697
MluNI	TGGCCA	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	858
MnlI	CCTC	8 cut(s)	137, 147, 435, 439, 535, 549, 781, 829
Mox20I	TGGCCA	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	157
MslI	CAYNNNNRTG	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	157
MspA1I	CMGCKG	3 cut(s)	131, 711, 734
MspI	CCGG	1 cut(s)	904
MspR9I	CCNGG	2 cut(s)	462, 547
MvaI	CCWGG	2 cut(s)	462, 547
MwoI	GCNNNNNNNGC	3 cut(s)	125, 183, 861
NdeI	CATATG	1 cut(s)	152
NdeII	GATC	5 cut(s)	164, 421, 469, 615, 880
NlaIII	CATG	3 cut(s)	68, 229, 645
NlaIV	GGNNCC	2 cut(s)	78, 135
PaeR7I	CTCGAG	1 cut(s)	619
PagI	TCATGA	1 cut(s)	64
PfeI	GAWTC	4 cut(s)	92, 310, 632, 809
PkrI	GCNGC	5 cut(s)	130, 179, 221, 607, 857
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PsiI	TTATAA	2 cut(s)	408, 576
Psp124BI	GAGCTC	1 cut(s)	891
Psp6I	CCWGG	2 cut(s)	460, 545
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	2 cut(s)	460, 545
PspN4I	GGNNCC	2 cut(s)	78, 135
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	3 cut(s)	179, 188, 610
PstNI	CAGNNNCTG	1 cut(s)	183
PsuI	RGATCY	4 cut(s)	164, 421, 615, 880
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	17, 849
RsaNI	GTAC	2 cut(s)	16, 848
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	891
SatI	GCNGC	5 cut(s)	129, 178, 220, 606, 856
Sau3AI	GATC	5 cut(s)	164, 421, 469, 615, 880
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	849
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	2 cut(s)	462, 547
SduI	GDGCHC	3 cut(s)	362, 718, 891
SexAI	ACCWGGT	1 cut(s)	460
SfaNI	GCATC	2 cut(s)	115, 313
SfcI	CTRYAG	3 cut(s)	175, 184, 606
Sfr274I	CTCGAG	1 cut(s)	619
SlaI	CTCGAG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	4 cut(s)	207, 257, 619, 884
SmoI	CTYRAG	4 cut(s)	207, 257, 619, 884
Sse9I	AATT	5 cut(s)	455, 475, 492, 624, 697
SsiI	CCGC	5 cut(s)	131, 219, 561, 709, 856
SspMI	CTAG	4 cut(s)	252, 414, 441, 516
SstI	GAGCTC	1 cut(s)	891
StyD4I	CCNGG	2 cut(s)	460, 545
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	15, 44
TaqI	TCGA	3 cut(s)	288, 620, 866
TasI	AATT	5 cut(s)	455, 475, 492, 624, 697
TatI	WGTACW	1 cut(s)	847
TauI	GCSGC	2 cut(s)	222, 858
TfiI	GAWTC	4 cut(s)	92, 310, 632, 809
TseI	GCWGC	3 cut(s)	128, 177, 605
TspDTI	ATGAA	5 cut(s)	81, 242, 356, 759, 765
TspGWI	ACGGA	1 cut(s)	531
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	1 cut(s)	697
XhoI	CTCGAG	1 cut(s)	619
XspI	CTAG	4 cut(s)	252, 414, 441, 516
ZrmI	AGTACT	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.