Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015882

Physical Location & Seq

Genomic Coordinates Reverse (-)

45796883 .. 45797449

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025445

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAATGTCCACAGGAGAGACAGAGCTAGACTCAAGCAGTCTCCCAATGACCAAAATGTCGAAACTGCCCATCATCATCAGAATCATCAGGATATCTCTGTCCAAATCAATCCCTTCTCATCATCTCGGGATCCTCCCTCATCGCCCTCTAGGGTTTCGGCTCAATTACCAGGTAAAGATCAAAATTGTGGTCAAGAGCAAATCACCTTGAATATCCCAACTTCTAGGTCATCCTCTGTATCATCTCCTCCGTCCAGGTCAATCTTGACCCCAAATAGATATTATAATAACTCTGTTGCAAGAAAGACCGAAGCTGCAGAGAAGATCTCGAGCATTGTGGAATCTGGGTCATGTAGGGCTAATAAGGGGGGTGACTATGTCACAACTGATTTGTCTCTGAGTTTGAATTTGGTCGTCCGCTGTGCTCGTCCATCTGTGTCAGCTGGTGGTGATGAAGATGAAGTGCTATCATTAGTTGCAAGAGAAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

165

Amino Acids

17.91

Weight (kDa)

6.97

Isoelectric Point (pI)

69.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37740
fragaria_vesca	FvH4_6g13130
malus_domestica	MD04G1134600.v1.1 MD12G1148100.v1.1
prunus_persica	Prupe.6G260700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0465501
rosa_laevigata	RLG00000024638 RLG00000025445
rosa_multiflora	Rmu_sc0001712.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415010
rosa_rugosa	Rorug03G0077000
rosa_samantha	Rh3BG142400 Rh3CG143600 Rh3DG143500
rosa_wichuraiana	Rw3G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	285
AasI	GACNNNNNNGTC	1 cut(s)	56
AciI	CCGC	1 cut(s)	418
AclWI	GGATC	2 cut(s)	125, 138
AcsI	RAATTY	1 cut(s)	406
AgsI	TTSAA	2 cut(s)	211, 406
AjnI	CCWGG	2 cut(s)	169, 254
AluBI	AGCT	3 cut(s)	26, 314, 443
AluI	AGCT	3 cut(s)	26, 314, 443
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	3 cut(s)	12, 45, 399
AlwI	GGATC	2 cut(s)	125, 138
Ama87I	CYCGRG	2 cut(s)	126, 328
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	406
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
AsuHPI	GGTGA	3 cut(s)	196, 383, 461
AvaI	CYCGRG	2 cut(s)	126, 328
BamHI	GGATCC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	2 cut(s)	78, 439
BciT130I	CCWGG	2 cut(s)	171, 256
BcoDI	GTCTC	3 cut(s)	12, 45, 399
BfaI	CTAG	3 cut(s)	27, 150, 225
BfmI	CTRYAG	1 cut(s)	315
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	171, 256
BmeT110I	CYCGRG	2 cut(s)	126, 328
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	171, 256
BplI	GAGNNNNNCTC	4 cut(s)	15, 47, 311, 343
BpuEI	CTTGAG	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	171, 256
BseGI	GGATG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	427
BsiHKCI	CYCGRG	2 cut(s)	126, 328
BsmAI	GTCTC	3 cut(s)	12, 45, 399
BsoBI	CYCGRG	2 cut(s)	126, 328
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	130, 178, 324
BspACI	CCGC	1 cut(s)	418
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	2 cut(s)	125, 138
BssMI	GATC	3 cut(s)	130, 178, 324
Bst2UI	CCWGG	2 cut(s)	171, 256
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	230
BstKTI	GATC	3 cut(s)	133, 181, 327
BstMAI	GTCTC	3 cut(s)	12, 45, 399
BstMBI	GATC	3 cut(s)	130, 178, 324
BstNI	CCWGG	2 cut(s)	171, 256
BstSCI	CCNGG	2 cut(s)	169, 254
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	2 cut(s)	130, 324
BstYI	RGATCY	2 cut(s)	130, 324
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	230
CsiI	ACCWGGT	1 cut(s)	169
CviAII	CATG	1 cut(s)	351
CviJI	RGCY	5 cut(s)	26, 161, 314, 359, 443
CviKI_1	RGCY	5 cut(s)	26, 161, 314, 359, 443
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	3 cut(s)	132, 180, 326
DpnII	GATC	3 cut(s)	130, 178, 324
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	94
Eco88I	CYCGRG	2 cut(s)	126, 328
EcoRII	CCWGG	2 cut(s)	169, 254
EcoRV	GATATC	1 cut(s)	94
FaeI	CATG	1 cut(s)	354
FaiI	YATR	3 cut(s)	285, 352, 378
FatI	CATG	1 cut(s)	350
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	3 cut(s)	27, 150, 225
GluI	GCNGC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	354
HinfI	GANTC	3 cut(s)	30, 82, 341
HphI	GGTGA	3 cut(s)	196, 383, 461
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	81, 399
Hpy188III	TCNNGA	5 cut(s)	89, 128, 194, 265, 328
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	299, 317, 479
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	130, 178, 324
LpnPI	CCDG	7 cut(s)	74, 156, 183, 241, 268, 330, 429
Lsp1109I	GCAGC	1 cut(s)	301
MabI	ACCWGGT	1 cut(s)	169
MaeI	CTAG	3 cut(s)	27, 150, 225
MaeIII	GTNAC	2 cut(s)	371, 379
MalI	GATC	3 cut(s)	132, 180, 326
MboI	GATC	3 cut(s)	130, 178, 324
MboII	GAAGA	2 cut(s)	334, 467
MflI	RGATCY	2 cut(s)	130, 324
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	3 cut(s)	164, 184, 406
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	5 cut(s)	144, 148, 157, 244, 258
MspA1I	CMGCKG	2 cut(s)	420, 443
MspR9I	CCNGG	2 cut(s)	171, 256
MvaI	CCWGG	2 cut(s)	171, 256
NdeII	GATC	3 cut(s)	130, 178, 324
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	371, 379
PaeR7I	CTCGAG	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	82, 341
PflFI	GACNNNGTC	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PsiI	TTATAA	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	169, 254
PspGI	CCWGG	2 cut(s)	169, 254
PspN4I	GGNNCC	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	130, 324
PsyI	GACNNNGTC	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	443
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	3 cut(s)	130, 178, 324
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	171, 256
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	7 cut(s)	28, 175, 209, 230, 260, 316, 445
SexAI	ACCWGGT	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	32, 328
SmoI	CTYRAG	2 cut(s)	32, 328
Sse9I	AATT	3 cut(s)	164, 184, 406
SsiI	CCGC	1 cut(s)	418
SspMI	CTAG	3 cut(s)	27, 150, 225
StyD4I	CCNGG	2 cut(s)	169, 254
TaqI	TCGA	2 cut(s)	60, 329
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	164, 184, 406
TfiI	GAWTC	2 cut(s)	82, 341
TseFI	GTSAC	2 cut(s)	371, 379
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	2 cut(s)	371, 379
TspDTI	ATGAA	3 cut(s)	17, 468, 474
TspGWI	ACGGA	1 cut(s)	240
Tth111I	GACNNNGTC	1 cut(s)	377
XapI	RAATTY	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	328
XspI	CTAG	3 cut(s)	27, 150, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.