Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015882

Physical Location & Seq

Genomic Coordinates Forward (+)

8019435 .. 8021270

Gene Structure 1836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGCAAGCACGGTACTGGATGTGGGCAAAGCGCAAGCACAGTAGTCTGATGAGTGCTTCTCATGAAGTTCAGGTGCCTTCTTCCCACGACGAATCGTCGTGGGAAGAACAAGCTTTTGCAGAAGATGCAGCGGGGCCTCTCGGAGGTTGCATATGGCCACCGAGATCTTATTCCTGCAGCTTCTGCAGGAGAGAGTTTCGTTCGGCTCAAGCTCTTGGCGGCCACATGAATGTTCACAGGAGAGACAGAGCTAGACTCAAGCAGTCACCGAATGAACAAAATGTCGAAACTGCCCATCATCATCATGGCCTTCCTGATCAAGATCATCAGGATATTTCTGTCCAAATCAATCCCTTCTCATCGACTCTGGGCACTTTTCATCAATACCCATCTCATCATCAAGTTTGTGCCTTGGTTTATAACCCTAATAACCCTAGTTCGAATCCTCTCTCATCGCCATCTAGGGTTTCGGCTCAATTACCAGGTAAAAATCAAATCTGTGGTCAAGAGCAAATTACCTTGAATATCCCAACCTCTAGGTCATCCTCTGTATCAAATCCTCCGTCCAGGTCAATCTTGACTGGCAATAGATATTATAATAACTCTGTTGCAAGAAATACAGAAGCTGCAGAGAAGATCTCAAGAATTGTGGAATCTGGGTCGTGTAGGGCAAATAAGGGTGGTGACTATGTCACAACTGATTTGTCTGTGAGTCTGAATTTGGTCGTTCGCTGTGCTCGTCCATCTGTGTCAGCTGGTAGTGATGAAGATGAAGCTATAATCAGTTGCAAGAGAAGAAGAATAATGGAGGAGAAGCCATCATCCAAAGACTCTTTACCTTTCTTCCTAAAATCCGAGGGGTTTGAAGTACTAAGCCGCCCCAGCTCCATCGAAGAGTTGGATCTTGAGCTCAGGCTCGGTGACCGTCCTAAGGTAATCAAAGTAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

318

Amino Acids

35.32

Weight (kDa)

7.67

Isoelectric Point (pI)

65.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37740
fragaria_vesca	FvH4_6g13130
malus_domestica	MD04G1134600.v1.1 MD12G1148100.v1.1
prunus_persica	Prupe.6G260700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0465501
rosa_laevigata	RLG00000024638 RLG00000025445
rosa_multiflora	Rmu_sc0001712.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415010
rosa_rugosa	Rorug03G0077000
rosa_samantha	Rh3BG142400 Rh3CG143600 Rh3DG143500
rosa_wichuraiana	Rw3G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	423, 600
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	3 cut(s)	134, 222, 880
AclWI	GGATC	1 cut(s)	912
AcoI	YGGCCR	2 cut(s)	158, 223
AcsI	RAATTY	1 cut(s)	721
AfaI	GTAC	2 cut(s)	17, 873
AfiI	CCNNNNNNNGG	2 cut(s)	146, 934
AgsI	TTSAA	2 cut(s)	526, 869
AhdI	GACNNNNNGTC	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	484, 569
AluBI	AGCT	9 cut(s)	116, 183, 215, 254, 629, 758, 779, 888, 913
AluI	AGCT	9 cut(s)	116, 183, 215, 254, 629, 758, 779, 888, 913
Alw21I	GWGCWC	2 cut(s)	742, 915
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	912
AlwNI	CAGNNNCTG	2 cut(s)	186, 629
AoxI	GGCC	4 cut(s)	137, 158, 223, 310
ApeKI	GCWGC	3 cut(s)	131, 180, 629
ApoI	RAATTY	1 cut(s)	721
ArsI	GACNNNNNNTTYG	4 cut(s)	490, 522, 551, 583
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	261, 698, 935
AsuII	TTCGAA	1 cut(s)	443
AxyI	CCTNAGG	1 cut(s)	933
BaeGI	GKGCMC	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	915
Bbv12I	GWGCWC	2 cut(s)	742, 915
BbvI	GCAGC	3 cut(s)	143, 192, 616
BccI	CCATC	6 cut(s)	306, 400, 469, 754, 829, 899
BciT130I	CCWGG	2 cut(s)	486, 571
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	4 cut(s)	255, 438, 465, 540
BfmI	CTRYAG	3 cut(s)	178, 187, 630
BglII	AGATCT	2 cut(s)	167, 639
BisI	GCNGC	5 cut(s)	132, 181, 223, 630, 880
BlsI	GCNGC	5 cut(s)	133, 182, 224, 631, 881
BmcAI	AGTACT	1 cut(s)	873
Bme1390I	CCNGG	2 cut(s)	486, 571
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	78, 138
BmrFI	CCNGG	2 cut(s)	486, 571
BmsI	GCATC	1 cut(s)	118
BplI	GAGNNNNNCTC	6 cut(s)	46, 78, 243, 275, 626, 658
Bpu10I	CCTNAGC	1 cut(s)	914
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	4 cut(s)	195, 245, 628, 929
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	414, 858
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 934
Bse1I	ACTGG	2 cut(s)	23, 589
Bse21I	CCTNAGG	1 cut(s)	933
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	486, 571
BseDI	CCNNGG	2 cut(s)	414, 858
BseGI	GGATG	3 cut(s)	27, 545, 824
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	146, 934
BseMII	CTCAG	1 cut(s)	928
BseNI	ACTGG	2 cut(s)	23, 589
BseRI	GAGGAG	1 cut(s)	827
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	3 cut(s)	143, 192, 616
BseYI	CCCAGC	1 cut(s)	884
BshFI	GGCC	4 cut(s)	139, 160, 225, 312
BshNI	GGYRCC	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	742, 915
BslI	CCNNNNNNNGG	2 cut(s)	146, 934
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	4 cut(s)	139, 160, 225, 312
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	3 cut(s)	377, 742, 915
Bsp143I	GATC	5 cut(s)	167, 319, 325, 639, 904
BspACI	CCGC	3 cut(s)	134, 222, 880
BspANI	GGCC	4 cut(s)	139, 160, 225, 312
BspCNI	CTCAG	1 cut(s)	927
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	78, 138
BspMAI	CTGCAG	3 cut(s)	182, 191, 634
BspPI	GGATC	1 cut(s)	912
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	23, 589
BssECI	CCNNGG	2 cut(s)	414, 858
BssMI	GATC	5 cut(s)	167, 319, 325, 639, 904
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	486, 571
Bst4CI	ACNGT	3 cut(s)	15, 44, 929
Bst6I	CTCTTC	1 cut(s)	891
BstAPI	GCANNNNNTGC	2 cut(s)	128, 186
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	9, 38
BstDEI	CTNAG	3 cut(s)	875, 914, 933
BstEII	GGTNACC	1 cut(s)	923
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	27, 545, 824
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	5 cut(s)	170, 322, 328, 642, 907
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	5 cut(s)	167, 319, 325, 639, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 186, 885
BstNI	CCWGG	2 cut(s)	486, 571
BstPI	GGTNACC	1 cut(s)	923
BstSCI	CCNGG	2 cut(s)	484, 569
BstSFI	CTRYAG	3 cut(s)	178, 187, 630
BstSLI	GKGCMC	1 cut(s)	377
BstV1I	GCAGC	3 cut(s)	143, 192, 616
BstX2I	RGATCY	3 cut(s)	167, 639, 904
BstYI	RGATCY	3 cut(s)	167, 639, 904
Bsu36I	CCTNAGG	1 cut(s)	933
BsuRI	GGCC	4 cut(s)	139, 160, 225, 312
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	27, 545, 824
Cac8I	GCNNGC	2 cut(s)	9, 38
CaiI	CAGNNNCTG	2 cut(s)	186, 629
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	137
CsiI	ACCWGGT	1 cut(s)	484
Csp6I	GTAC	2 cut(s)	16, 872
CspCI	CAANNNNNGTGG	2 cut(s)	633, 668
CviAII	CATG	3 cut(s)	65, 229, 308
CviQI	GTAC	2 cut(s)	16, 872
DdeI	CTNAG	3 cut(s)	875, 914, 933
DpnI	GATC	5 cut(s)	169, 321, 327, 641, 906
DpnII	GATC	5 cut(s)	167, 319, 325, 639, 904
DriI	GACNNNNNGTC	1 cut(s)	97
EaeI	YGGCCR	2 cut(s)	158, 223
Eam1104I	CTCTTC	1 cut(s)	891
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	891
Ecl136II	GAGCTC	1 cut(s)	913
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	915
Eco53kI	GAGCTC	1 cut(s)	913
Eco81I	CCTNAGG	1 cut(s)	933
Eco91I	GGTNACC	1 cut(s)	923
EcoICRI	GAGCTC	1 cut(s)	913
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	923
EcoRII	CCWGG	2 cut(s)	484, 569
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	915
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	3 cut(s)	68, 232, 311
FaiI	YATR	9 cut(s)	66, 155, 157, 230, 309, 423, 600, 693, 782
FatI	CATG	3 cut(s)	64, 228, 307
FauI	CCCGC	1 cut(s)	127
FauNDI	CATATG	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	5 cut(s)	132, 181, 223, 630, 880
FokI	GGATG	3 cut(s)	34, 532, 811
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	5 cut(s)	132, 181, 223, 630, 880
FspBI	CTAG	4 cut(s)	255, 438, 465, 540
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	5 cut(s)	132, 181, 223, 630, 880
GsaI	CCCAGC	1 cut(s)	888
HaeIII	GGCC	4 cut(s)	139, 160, 225, 312
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	68, 232, 311
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	7 cut(s)	95, 258, 367, 445, 656, 715, 833
HphI	GGTGA	3 cut(s)	261, 698, 935
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	4 cut(s)	51, 146, 720, 859
Hpy188III	TCNNGA	8 cut(s)	65, 317, 323, 332, 509, 580, 645, 908
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	2 cut(s)	95, 103
HpyAV	CCTTC	3 cut(s)	90, 323, 367
HpyCH4III	ACNGT	3 cut(s)	15, 44, 929
HpyCH4V	TGCA	8 cut(s)	122, 131, 153, 180, 189, 614, 632, 792
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 186, 885
HpyF3I	CTNAG	3 cut(s)	875, 914, 933
Hsp92II	CATG	3 cut(s)	68, 232, 311
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	167, 319, 325, 639, 904
LmnI	GCTCC	2 cut(s)	4, 893
Lsp1109I	GCAGC	3 cut(s)	143, 192, 616
LweI	GCATC	1 cut(s)	118
MabI	ACCWGGT	1 cut(s)	484
MaeI	CTAG	4 cut(s)	255, 438, 465, 540
MaeIII	GTNAC	4 cut(s)	267, 686, 694, 923
MalI	GATC	5 cut(s)	169, 321, 327, 641, 906
MboI	GATC	5 cut(s)	167, 319, 325, 639, 904
MboII	GAAGA	9 cut(s)	75, 119, 137, 649, 782, 810, 813, 838, 908
MflI	RGATCY	3 cut(s)	167, 639, 904
MhlI	GDGCHC	3 cut(s)	377, 742, 915
MlsI	TGGCCA	1 cut(s)	160
MluCI	AATT	4 cut(s)	479, 516, 648, 721
MluNI	TGGCCA	1 cut(s)	160
MlyI	GAGTC	4 cut(s)	252, 361, 724, 827
MmeI	TCCRAC	1 cut(s)	882
MnlI	CCTC	8 cut(s)	140, 150, 459, 547, 559, 573, 805, 853
Mox20I	TGGCCA	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	160
MseI	TTAA	1 cut(s)	952
MslI	CAYNNNNRTG	2 cut(s)	231, 306
Msp20I	TGGCCA	1 cut(s)	160
MspA1I	CMGCKG	2 cut(s)	134, 758
MspR9I	CCNGG	2 cut(s)	486, 571
MvaI	CCWGG	2 cut(s)	486, 571
MwoI	GCNNNNNNNGC	3 cut(s)	128, 186, 885
NdeI	CATATG	1 cut(s)	155
NdeII	GATC	5 cut(s)	167, 319, 325, 639, 904
NlaIII	CATG	3 cut(s)	68, 232, 311
NlaIV	GGNNCC	2 cut(s)	78, 138
NmuCI	GTSAC	4 cut(s)	267, 686, 694, 923
NspV	TTCGAA	1 cut(s)	443
PagI	TCATGA	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	739
PfeI	GAWTC	3 cut(s)	95, 445, 656
PflFI	GACNNNGTC	1 cut(s)	692
PkrI	GCNGC	5 cut(s)	133, 182, 224, 631, 881
PleI	GAGTC	4 cut(s)	252, 361, 723, 827
PpsI	GAGTC	4 cut(s)	252, 361, 723, 827
PsiI	TTATAA	2 cut(s)	423, 600
Psp124BI	GAGCTC	1 cut(s)	915
Psp6I	CCWGG	2 cut(s)	484, 569
PspEI	GGTNACC	1 cut(s)	923
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	2 cut(s)	484, 569
PspN4I	GGNNCC	2 cut(s)	78, 138
PspPI	GGNCC	1 cut(s)	137
PstI	CTGCAG	3 cut(s)	182, 191, 634
PstNI	CAGNNNCTG	2 cut(s)	186, 629
PsuI	RGATCY	3 cut(s)	167, 639, 904
PsyI	GACNNNGTC	1 cut(s)	692
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	2 cut(s)	17, 873
RsaNI	GTAC	2 cut(s)	16, 872
RseI	CAYNNNNRTG	2 cut(s)	231, 306
SacI	GAGCTC	1 cut(s)	915
SaqAI	TTAA	1 cut(s)	952
SatI	GCNGC	5 cut(s)	132, 181, 223, 630, 880
Sau3AI	GATC	5 cut(s)	167, 319, 325, 639, 904
Sau96I	GGNCC	1 cut(s)	137
ScaI	AGTACT	1 cut(s)	873
SchI	GAGTC	4 cut(s)	252, 361, 724, 827
ScrFI	CCNGG	2 cut(s)	486, 571
SduI	GDGCHC	3 cut(s)	377, 742, 915
SexAI	ACCWGGT	1 cut(s)	484
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	3 cut(s)	178, 187, 630
SfuI	TTCGAA	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	231, 306
SmlI	CTYRAG	4 cut(s)	210, 260, 643, 908
SmoI	CTYRAG	4 cut(s)	210, 260, 643, 908
Sse9I	AATT	4 cut(s)	479, 516, 648, 721
SsiI	CCGC	3 cut(s)	134, 222, 880
SspMI	CTAG	4 cut(s)	255, 438, 465, 540
SstI	GAGCTC	1 cut(s)	915
StyD4I	CCNGG	2 cut(s)	484, 569
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	15, 44, 929
TaqI	TCGA	4 cut(s)	288, 365, 443, 894
TasI	AATT	4 cut(s)	479, 516, 648, 721
TatI	WGTACW	1 cut(s)	871
TauI	GCSGC	2 cut(s)	225, 882
TfiI	GAWTC	3 cut(s)	95, 445, 656
Tru1I	TTAA	1 cut(s)	952
Tru9I	TTAA	1 cut(s)	952
TseFI	GTSAC	4 cut(s)	267, 686, 694, 923
TseI	GCWGC	3 cut(s)	131, 180, 629
Tsp45I	GTSAC	4 cut(s)	267, 686, 694, 923
TspDTI	ATGAA	6 cut(s)	81, 245, 291, 371, 783, 789
TspGWI	ACGGA	1 cut(s)	555
Tth111I	GACNNNGTC	1 cut(s)	692
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	2 cut(s)	305, 898
XspI	CTAG	4 cut(s)	255, 438, 465, 540
ZrmI	AGTACT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.