RLG00000024638

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015882
Physical Location & Seq
Reverse (-)
37711038 .. 37712213
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024638

Sequence Viewer

Length: 966 bp
ATGGAGCAAGCACGGTACTGGATGTGGGCAAAGCGCAAGCACAGTAGTCTGATGAGTGCTTCTCATGAAGTTCAGGTGCCTTCCCATGACGAATCGTCGTGGGAGGAACAAGCTTTCGCAGAAGATGCAGCGGGGCCTCTCGGAGGTTGCATATGGCCACCGAGATCTTATTCCTGCAGCTTCTGCAGGAGAGAGTTTCGTTCGGCTCAAGCTCTTGGCGGCCACATGAATGTCCACAGGAGAGACAGAGCTAGACTCAAGCAGTCTCCCAATAATGACCAAAATGTCGAAACTGCCCATCATCATCATGACCATCATCATCAGAATCATCAGGATATCTCTGTCCAAATCAATCCCTTCTCATCATCTCTGGGCACTTTTCATCAATACCCATCTCATCATCAAGTTTGTGCCTTGGTTTATAACCCTAATAACCCTAGTTCAGATCCTCCCTCATCGCCTTCTAGGGTTTCGGCTCAATTACCAGGTAAAGATCAAAATTGTGGTCTAGAGCAAATTACCTTGAATATCCCAACTTCTAGGTCATCCTCTGTATCATCTCCTCCGTCAAGGACATTCTTGACCGCAAATAGATATTATAATAACTCTGTTGCAAGAAAGACTGAAGCTGCAGAGAAGATCTCGAGAATTGTGGAATCTGGATCATGTAGGGCTAATAAGGGTGCTGATTATGTTACAACTGATTTGTCTGTGAGTTTAAATTTGGTCGTCCGCTGTGCTCGTCCATCTGTGTCAGCTGGTGGTGATGAAGATGAAGCTATCATTAGTTGCAAGAGAAGAAGAATAATGGAGGAGAAGCAATCATCCAAAGATTCTTTACCTTTTTTCCTAAAATCGGAGGGTTTTGAAGTACTTAGCCGCCCCAGCTCCATTGAAGAGTTGGATCTTGAGCTCAGGCTCGGAGACCGGCCTAAGGGTGTAACAATGACCATATGGGAGTCATAG

Protein Analysis

322

Amino Acids

35.95

Weight (kDa)

7.27

Isoelectric Point (pI)

67.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37740
fragaria_vesca FvH4_6g13130
malus_domestica MD04G1134600.v1.1 MD12G1148100.v1.1
prunus_persica Prupe.6G260700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0465501
rosa_laevigata RLG00000024638 RLG00000025445
rosa_multiflora Rmu_sc0001712.1_g000003
rosa_roxburghii Rroxscaffold_6G00415010
rosa_rugosa Rorug03G0077000
rosa_samantha Rh3BG142400 Rh3CG143600 Rh3DG143500
rosa_wichuraiana Rw3G011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 423, 600
AasI GACNNNNNNGTC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 5 cut(s) 131, 219, 585, 733, 880
AclWI GGATC 3 cut(s) 440, 670, 912
AcoI YGGCCR 2 cut(s) 155, 220
AcsI RAATTY 1 cut(s) 721
AcuI CTGAAG 1 cut(s) 645
AfaI GTAC 2 cut(s) 17, 873
AfiI CCNNNNNNNGG 3 cut(s) 143, 856, 934
AgsI TTSAA 3 cut(s) 526, 869, 896
AhdI GACNNNNNGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 9 cut(s) 113, 180, 212, 251, 629, 758, 779, 888, 913
AluI AGCT 9 cut(s) 113, 180, 212, 251, 629, 758, 779, 888, 913
Alw21I GWGCWC 2 cut(s) 742, 915
Alw26I GTCTC 3 cut(s) 237, 270, 918
AlwI GGATC 3 cut(s) 440, 670, 912
AlwNI CAGNNNCTG 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 643
AoxI GGCC 4 cut(s) 134, 155, 220, 929
ApeKI GCWGC 3 cut(s) 128, 177, 629
ApoI RAATTY 1 cut(s) 721
ArsI GACNNNNNNTTYG 2 cut(s) 490, 522
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 776
AvaI CYCGRG 1 cut(s) 643
AxyI CCTNAGG 1 cut(s) 933
BaeGI GKGCMC 1 cut(s) 377
BalI TGGCCA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 915
Bbv12I GWGCWC 2 cut(s) 742, 915
BbvI GCAGC 3 cut(s) 140, 189, 616
BccI CCATC 4 cut(s) 306, 321, 400, 754
BciT130I CCWGG 1 cut(s) 486
BcoDI GTCTC 3 cut(s) 237, 270, 918
BfaI CTAG 5 cut(s) 252, 438, 465, 509, 540
BfmI CTRYAG 3 cut(s) 175, 184, 630
BglII AGATCT 2 cut(s) 164, 639
BisI GCNGC 5 cut(s) 129, 178, 220, 630, 880
BlsI GCNGC 5 cut(s) 130, 179, 221, 631, 881
BmcAI AGTACT 1 cut(s) 873
Bme1390I CCNGG 1 cut(s) 486
BmeRI GACNNNNNGTC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 643
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 78, 135
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 115
BplI GAGNNNNNCTC 6 cut(s) 46, 78, 240, 272, 626, 658
Bpu10I CCTNAGC 1 cut(s) 914
BpuEI CTTGAG 3 cut(s) 192, 242, 929
BsaI GGTCTC 1 cut(s) 918
BsaJI CCNNGG 1 cut(s) 414
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 856, 934
Bse118I RCCGGY 1 cut(s) 927
Bse1I ACTGG 1 cut(s) 23
Bse21I CCTNAGG 1 cut(s) 933
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 3 cut(s) 27, 545, 824
BseLI CCNNNNNNNGG 3 cut(s) 143, 856, 934
BseMII CTCAG 1 cut(s) 928
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 2 cut(s) 552, 827
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 3 cut(s) 140, 189, 616
BseYI CCCAGC 1 cut(s) 884
BshFI GGCC 4 cut(s) 136, 157, 222, 931
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 2 cut(s) 742, 915
BsiHKCI CYCGRG 1 cut(s) 643
BsiSI CCGG 1 cut(s) 928
BslI CCNNNNNNNGG 3 cut(s) 143, 856, 934
BsmAI GTCTC 3 cut(s) 237, 270, 918
BsnI GGCC 4 cut(s) 136, 157, 222, 931
Bso31I GGTCTC 1 cut(s) 918
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 3 cut(s) 377, 742, 915
Bsp143I GATC 6 cut(s) 164, 445, 493, 639, 662, 904
BspACI CCGC 5 cut(s) 131, 219, 585, 733, 880
BspANI GGCC 4 cut(s) 136, 157, 222, 931
BspCNI CTCAG 1 cut(s) 927
BspHI TCATGA 2 cut(s) 64, 307
BspLI GGNNCC 2 cut(s) 78, 135
BspMAI CTGCAG 3 cut(s) 179, 188, 634
BspPI GGATC 3 cut(s) 440, 670, 912
BspT107I GGYRCC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 918
BsrFI RCCGGY 1 cut(s) 927
BsrI ACTGG 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 927
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 6 cut(s) 164, 445, 493, 639, 662, 904
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 2 cut(s) 15, 44
Bst6I CTCTTC 1 cut(s) 891
BstAPI GCANNNNNTGC 2 cut(s) 125, 183
BstC8I GCNNGC 2 cut(s) 9, 38
BstDEI CTNAG 3 cut(s) 875, 914, 933
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 27, 545, 824
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 6 cut(s) 167, 448, 496, 642, 665, 907
BstMAI GTCTC 3 cut(s) 237, 270, 918
BstMBI GATC 6 cut(s) 164, 445, 493, 639, 662, 904
BstMWI GCNNNNNNNGC 3 cut(s) 125, 183, 885
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 3 cut(s) 175, 184, 630
BstSLI GKGCMC 1 cut(s) 377
BstV1I GCAGC 3 cut(s) 140, 189, 616
BstX2I RGATCY 4 cut(s) 164, 445, 639, 904
BstYI RGATCY 4 cut(s) 164, 445, 639, 904
Bsu36I CCTNAGG 1 cut(s) 933
BsuRI GGCC 4 cut(s) 136, 157, 222, 931
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 3 cut(s) 27, 545, 824
Cac8I GCNNGC 2 cut(s) 9, 38
CaiI CAGNNNCTG 1 cut(s) 183
CciI TCATGA 2 cut(s) 64, 307
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 927
Cfr13I GGNCC 1 cut(s) 134
CsiI ACCWGGT 1 cut(s) 484
Csp6I GTAC 2 cut(s) 16, 872
CviAII CATG 5 cut(s) 65, 86, 226, 308, 666
CviQI GTAC 2 cut(s) 16, 872
DdeI CTNAG 3 cut(s) 875, 914, 933
DpnI GATC 6 cut(s) 166, 447, 495, 641, 664, 906
DpnII GATC 6 cut(s) 164, 445, 493, 639, 662, 904
DraI TTTAAA 1 cut(s) 720
DrdI GACNNNNNNGTC 1 cut(s) 284
DriI GACNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 2 cut(s) 155, 220
Eam1104I CTCTTC 1 cut(s) 891
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 891
Ecl136II GAGCTC 1 cut(s) 913
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 915
Eco31I GGTCTC 1 cut(s) 918
Eco32I GATATC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 913
Eco57I CTGAAG 1 cut(s) 645
Eco81I CCTNAGG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 643
EcoICRI GAGCTC 1 cut(s) 913
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 484
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 915
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 5 cut(s) 68, 89, 229, 311, 669
FatI CATG 5 cut(s) 64, 85, 225, 307, 665
FauI CCCGC 1 cut(s) 124
FauNDI CATATG 2 cut(s) 152, 953
Fnu4HI GCNGC 5 cut(s) 129, 178, 220, 630, 880
FokI GGATG 3 cut(s) 34, 532, 811
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 5 cut(s) 129, 178, 220, 630, 880
FspBI CTAG 5 cut(s) 252, 438, 465, 509, 540
GlaI GCGC 1 cut(s) 35
GluI GCNGC 5 cut(s) 129, 178, 220, 630, 880
GsaI CCCAGC 1 cut(s) 888
HaeIII GGCC 4 cut(s) 136, 157, 222, 931
HapII CCGG 1 cut(s) 928
HhaI GCGC 1 cut(s) 36
Hin1II CATG 5 cut(s) 68, 89, 229, 311, 669
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 6 cut(s) 92, 255, 325, 656, 833, 959
HpaII CCGG 1 cut(s) 928
HphI GGTGA 1 cut(s) 776
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 6 cut(s) 51, 143, 324, 445, 859, 923
Hpy188III TCNNGA 9 cut(s) 65, 308, 332, 509, 580, 643, 645, 660, 908
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 3 cut(s) 90, 367, 471
HpyCH4III ACNGT 2 cut(s) 15, 44
HpyCH4V TGCA 7 cut(s) 128, 150, 177, 186, 614, 632, 792
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 183, 885
HpyF3I CTNAG 3 cut(s) 875, 914, 933
Hsp92II CATG 5 cut(s) 68, 89, 229, 311, 669
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 6 cut(s) 164, 445, 493, 639, 662, 904
LmnI GCTCC 2 cut(s) 4, 893
Lsp1109I GCAGC 3 cut(s) 140, 189, 616
LweI GCATC 1 cut(s) 115
MabI ACCWGGT 1 cut(s) 484
MaeI CTAG 5 cut(s) 252, 438, 465, 509, 540
MaeIII GTNAC 2 cut(s) 694, 940
MalI GATC 6 cut(s) 166, 447, 495, 641, 664, 906
MboI GATC 6 cut(s) 164, 445, 493, 639, 662, 904
MboII GAAGA 6 cut(s) 134, 649, 782, 810, 813, 908
MflI RGATCY 4 cut(s) 164, 445, 639, 904
MhlI GDGCHC 3 cut(s) 377, 742, 915
MlsI TGGCCA 1 cut(s) 157
MluCI AATT 5 cut(s) 479, 499, 516, 648, 721
MluNI TGGCCA 1 cut(s) 157
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 882
MnlI CCTC 9 cut(s) 97, 137, 147, 459, 463, 559, 573, 805, 853
Mox20I TGGCCA 1 cut(s) 157
MscI TGGCCA 1 cut(s) 157
MseI TTAA 1 cut(s) 719
MslI CAYNNNNRTG 2 cut(s) 228, 306
Msp20I TGGCCA 1 cut(s) 157
MspA1I CMGCKG 3 cut(s) 131, 735, 758
MspI CCGG 1 cut(s) 928
MspR9I CCNGG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 125, 183, 885
NdeI CATATG 2 cut(s) 152, 953
NdeII GATC 6 cut(s) 164, 445, 493, 639, 662, 904
NlaIII CATG 5 cut(s) 68, 89, 229, 311, 669
NlaIV GGNNCC 2 cut(s) 78, 135
PaeR7I CTCGAG 1 cut(s) 643
PagI TCATGA 2 cut(s) 64, 307
PfeI GAWTC 4 cut(s) 92, 325, 656, 833
PkrI GCNGC 5 cut(s) 130, 179, 221, 631, 881
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PsiI TTATAA 2 cut(s) 423, 600
Psp124BI GAGCTC 1 cut(s) 915
Psp6I CCWGG 1 cut(s) 484
PspFI CCCAGC 1 cut(s) 884
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 78, 135
PspPI GGNCC 1 cut(s) 134
PstI CTGCAG 3 cut(s) 179, 188, 634
PstNI CAGNNNCTG 1 cut(s) 183
PsuI RGATCY 4 cut(s) 164, 445, 639, 904
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 2 cut(s) 17, 873
RsaNI GTAC 2 cut(s) 16, 872
RseI CAYNNNNRTG 2 cut(s) 228, 306
SacI GAGCTC 1 cut(s) 915
SaqAI TTAA 1 cut(s) 719
SatI GCNGC 5 cut(s) 129, 178, 220, 630, 880
Sau3AI GATC 6 cut(s) 164, 445, 493, 639, 662, 904
Sau96I GGNCC 1 cut(s) 134
ScaI AGTACT 1 cut(s) 873
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 3 cut(s) 377, 742, 915
SexAI ACCWGGT 1 cut(s) 484
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 3 cut(s) 175, 184, 630
Sfr274I CTCGAG 1 cut(s) 643
SlaI CTCGAG 1 cut(s) 643
SmiMI CAYNNNNRTG 2 cut(s) 228, 306
SmlI CTYRAG 4 cut(s) 207, 257, 643, 908
SmoI CTYRAG 4 cut(s) 207, 257, 643, 908
Sse9I AATT 5 cut(s) 479, 499, 516, 648, 721
SsiI CCGC 5 cut(s) 131, 219, 585, 733, 880
SspMI CTAG 5 cut(s) 252, 438, 465, 509, 540
SstI GAGCTC 1 cut(s) 915
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 15, 44
TaqI TCGA 2 cut(s) 288, 644
TasI AATT 5 cut(s) 479, 499, 516, 648, 721
TatI WGTACW 1 cut(s) 871
TauI GCSGC 2 cut(s) 222, 882
TfiI GAWTC 4 cut(s) 92, 325, 656, 833
Tru1I TTAA 1 cut(s) 719
Tru9I TTAA 1 cut(s) 719
TseI GCWGC 3 cut(s) 128, 177, 629
TspDTI ATGAA 5 cut(s) 81, 242, 371, 783, 789
TspGWI ACGGA 1 cut(s) 555
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 1 cut(s) 721
XbaI TCTAGA 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 898
XhoI CTCGAG 1 cut(s) 643
XspI CTAG 5 cut(s) 252, 438, 465, 509, 540
ZrmI AGTACT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.