Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015190

Physical Location & Seq

Genomic Coordinates Reverse (-)

15909908 .. 15914711

Gene Structure 4804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2577 bp

ATGGCAAACGTGTCTGTTGCTGCGGAATGGCAGCTTCTCTATGATCGATATTATAGGAAGCCTGAGATATACCAAATGAAATGGAAACATGTAGATTTGAGTCGTAACAAGGTGGCGTGTGCTTCGTTTGGTGGGCCAATTGCAGTTATTCGAGATGACTCGAAGATTGTCCAACTATATGCTGAATCTGCTCTAAGAAAGCTCCGCATCTTTAACTCAGCAGGTATACTTCTCTCTGAGACGGTTTGGAAGCATCCCGGGGGACGTCTGATCGGAATGTCCTGGTCAGATGATCAGACACTAATTTGCATTGTCCAAGATGGAACCATTTATCGTTACAACATCCACGCTGAGCTCATTGAGCCCAATATGTCTATGGGCCAGGAGTGCTTTGAGCAGAATGTGGTGGAGTGTGTCTTCTGGGGAAATGGTGTTGTCTGCTTGACAGAAGGAGGGCAGTTGATCTGTATTTTCGATTTCAAGACAATGAAGCCTTCTAAGTTGCCTGATGTGCCGGGGTTAGCAGAAGATGATCTGCTTCAGCCAATCTGCTTGACTGTGAGGGAACCTAAGTACACGATGTCTGGGATTGCTGAGGTGTTGGTAGCAGTTGGCGATGATATTTTTGTTGTGGAGGAGGACATGGTTCAAACTATTAGGTTTGATGAGCCTAGTGTTGATGACTCTGAGATGCAGAATGATGATTCTGGGAATTTGATTGGAGTGGTCCAGAAGATGATTGTATCACCTAATGGAAAATTTCTAACACTCTTCACTCATGATGGCCGGATTGTTGTTGTTGACATGGAAACAAAACAAATTGCTATTGACTACTCTTGTGAGTCAGCCCTTCCTCCGCAGCAAATGGCTTGGTGTGGAATGGATAGTGTGCTGCTATATTGGGATGAGGATTTAATGATGGTGGGTCCTGTAGGAGACCCAGTTCACTATTTCTATGATGAACCTATAATTCTTATCCCAGAATGCGATGGAGTGAGAATATTATCTAACACGAATCTTGAATTTCTGCAAAGAGTACCTGATTCTACTGAGTCAATCTTTAAGATTGGAAGCACATCACCTGCAGCTTTGCTATATGATGCTTTGGATCATTTTGACAGGCGAAGTGCTAAGGCAGATGAAAATTTGAGATTAATTCGTTCATCACTGTCGGAGGCTGTTGAATCCTGTATTGATGCCGCTGGACATGAATTTGATGTAACTCGTCAGAGGGCTCTGTTACGAGCGGCAAGTTATGGACAAGCTTTCTGCAGCAATTTTCAGCGTGAACGTGTCCAAGAGACTTGTAGAACGTTACGGGTTTTAAATGCGGTTCGTGATCCTGCTATTGGCATACCTCTTAGCATTCAGCAGTACAAGTTACTGACACCAGTGGTTTTGATTAGTCGCCTTATTAATGCTAATTGTCACCTTCTTGCTCTGCGGATATCTGAGTACTTAGATATGAATAAAGAAGTGGTGATAATGCATTGGGCATGTGCAAAGATAACTGCTTCACCATCAACTCCAGATTCTCATCTTCTTGAAATTTTACTTGATAAGCTCCAACTATGCAAAGGAATATCGTATGCTGCAGTGGCCACTCATGCTGATAACTGTGGCCGTCGAAAGTTAGCTGCAATGCTAGTTGAACATGAACCACGCTCCACGAAACAGGTACCTCTTTTATTAAGCATTGGGGAGGAAGACACTGCTTTAGTGAAAGCAACTGAGAGTGGTGACACTGACCTGGTTTATCTGGTCATATTTCATATATGGCAAAAGAGGCCTCCTTTGGAATTCTTTGCGATGATCCAAGGAAGAGTTTTGGCACGTGATCTATTTGTAGCTTATGCACGGTGTCATAAGCATGAATTTCTGAAGGATTTCTTCTTATCTACGGGCCAGATTCATGAGGTAGCTTTTCTTTTATGGAAAGAATCATGGGATATGGGGAAAAACCCAATGGCTAGCAAAGGATCTCCATTGCACGGTCCGCGCATAAAACTAATAGAGAAGGCTAGAAACCTTTTCTCCCAAACAAAGGAACACACTTTCGAGTCTAAGGCTGCTGAGGAACATGCAAAACTCCTGAAGATACAACATGAGCTAGAAGCTAGTACGAAGCAGGCTATCTTTGTTGATTCAAGCATCAATGATACTATACGCACATGTATTGTCCTGGGTAATAACCGTGCTGCAATAAAAGTGAAGACAGAATTCAAGGTCAGTGATAAAAGATGGTATTGGCTTAAAGCATTTGCTCTCGCTACAATCAAAGACTGGGCAGCGCTTGAAAAGTTTTCGAAGGAAAAGAGACCACCAATGGGGTTTCGTCCATTTGTGGAGGCATGCATTGATGCAGATGAGAAAGCGGAAGCTCTAAAATACATCCCCAAACTGTCTGATCTTGTGGAAAGAGGCGAGGCTTATGCTCGTATTGGAATGGCAAAGGAAGCGGCTGATTGCGCAGCTCAGGCAAATGATGGAGGAGAATTGCTTGAGAGATTCAGGAAGACGTTTGTACAGAATGCTATTTTCGATACCTTGTTAATGCCTTTCCAAGGAGCCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005856 GO:0006810 GO:0006906 GO:0006996 GO:0007033 GO:0008092 GO:0008150 GO:0009705 GO:0009987 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030897 GO:0031090 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032889 GO:0032991 GO:0033043 GO:0033263 GO:0035542 GO:0042144 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044088 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045992 GO:0045995 GO:0046907 GO:0048284 GO:0048519 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051093 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051469 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097576 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0099023 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Vps16_C Vps16_N

Protein Analysis

858

Amino Acids

96.63

Weight (kDa)

5.58

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps16_N	PF04841	8 - 429	1.5e-89	Vps16, N-terminal region
Vps16_C	PF04840	528 - 835	4.5e-66	Vps16, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38020 AT2G38020
fragaria_vesca	FvH4_6g38590 FvH4_6g38590
malus_domestica	MD17G1136200.v1.1
prunus_persica	Prupe.3G176600_v2.0.a1 Prupe.3G176600_v2.0.a1
pyrus_communis	pycom17g12990
rosa_chinensis	RchiOBHm_Chr2g0152001
rosa_laevigata	RLG00000020599
rosa_multiflora	Rmu_sc0017048.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096060
rosa_rugosa	Rorug02G0430200 Rorug02G0430300
rosa_samantha	Rh2BG503200
rosa_wichuraiana	Rw2G040350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1090
AatII	GACGTC	1 cut(s)	268
Acc16I	TGCGCA	1 cut(s)	2470
Acc36I	ACCTGC	2 cut(s)	212, 1090
Acc65I	GGTACC	1 cut(s)	1678
AccB1I	GGYRCC	1 cut(s)	1678
AccBSI	CCGCTC	1 cut(s)	1247
AccI	GTMKAC	1 cut(s)	226
AccII	CGCG	1 cut(s)	1999
AclI	AACGTT	1 cut(s)	1313
AclWI	GGATC	4 cut(s)	1116, 1334, 1807, 1987
AcoI	YGGCCR	3 cut(s)	784, 1599, 1621
AcsI	RAATTY	9 cut(s)	712, 758, 1022, 1144, 1211, 1548, 1799, 1874, 2219
AcuI	CTGAAG	3 cut(s)	524, 1901, 2114
AcvI	CACGTG	1 cut(s)	1835
AcyI	GRCGYC	1 cut(s)	265
AfaI	GTAC	7 cut(s)	575, 1038, 1376, 1457, 1680, 2122, 2526
AfeI	AGCGCT	1 cut(s)	2292
AfiI	CCNNNNNNNGG	5 cut(s)	1349, 1991, 2044, 2327, 2564
AflIII	ACRYGT	4 cut(s)	9, 88, 1291, 2171
AgsI	TTSAA	9 cut(s)	481, 650, 1022, 1184, 1547, 1652, 2148, 2224, 2297
AjnI	CCWGG	4 cut(s)	281, 381, 1749, 2181
AloI	GAACNNNNNNTCC	2 cut(s)	927, 959
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	4 cut(s)	233, 930, 1295, 2311
AlwI	GGATC	4 cut(s)	1116, 1334, 1807, 1987
Ama87I	CYCGRG	1 cut(s)	257
Aor51HI	AGCGCT	1 cut(s)	2292
AoxI	GGCC	7 cut(s)	134, 379, 784, 1599, 1621, 1787, 1903
ApoI	RAATTY	9 cut(s)	712, 758, 1022, 1144, 1211, 1548, 1799, 1874, 2219
AseI	ATTAAT	2 cut(s)	1154, 1416
Asp700I	GAANNNNTTC	1 cut(s)	1886
Asp718I	GGTACC	1 cut(s)	1678
AspLEI	GCGC	3 cut(s)	2001, 2293, 2471
AspS9I	GGNCC	6 cut(s)	134, 379, 727, 926, 1903, 1994
AsuC2I	CCSGG	3 cut(s)	258, 259, 516
AsuHPI	GGTGA	6 cut(s)	738, 1071, 1421, 1492, 1509, 1751
AsuII	TTCGAA	1 cut(s)	2306
AsuNHI	GCTAGC	1 cut(s)	1970
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	3 cut(s)	727, 926, 1994
BalI	TGGCCA	1 cut(s)	1601
BanI	GGYRCC	1 cut(s)	1678
BanII	GRGCYC	3 cut(s)	357, 366, 1237
BbrPI	CACGTG	1 cut(s)	1835
BbsI	GAAGAC	4 cut(s)	409, 1713, 2219, 2522
Bbv12I	GWGCWC	1 cut(s)	357
BbvCI	CCTCAGC	2 cut(s)	594, 2073
BccI	CCATC	7 cut(s)	314, 776, 913, 983, 1528, 2235, 2480
BceAI	ACGGC	1 cut(s)	1608
BcgI	CGANNNNNNTGC	2 cut(s)	2414, 2448
BciT130I	CCWGG	4 cut(s)	283, 383, 1751, 2183
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	3 cut(s)	258, 259, 516
BcoDI	GTCTC	4 cut(s)	233, 930, 1295, 2311
BfaI	CTAG	7 cut(s)	672, 1646, 1971, 2022, 2111, 2118, 2575
BfmI	CTRYAG	4 cut(s)	930, 1083, 1270, 1593
BfoI	RGCGCY	1 cut(s)	2294
BfuAI	ACCTGC	2 cut(s)	212, 1090
BlpI	GCTNAGC	1 cut(s)	351
BmcAI	AGTACT	1 cut(s)	1457
Bme1390I	CCNGG	7 cut(s)	258, 259, 283, 383, 516, 1751, 2183
Bme18I	GGWCC	3 cut(s)	727, 926, 1994
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	6 cut(s)	134, 379, 727, 926, 1903, 1994
BmiI	GGNNCC	5 cut(s)	325, 567, 927, 1680, 2569
BmrFI	CCNGG	7 cut(s)	258, 259, 283, 383, 516, 1751, 2183
BmrI	ACTGGG	2 cut(s)	935, 2293
BmsI	GCATC	7 cut(s)	216, 262, 681, 1090, 1186, 2160, 2350
BmtI	GCTAGC	1 cut(s)	1974
BmuI	ACTGGG	2 cut(s)	935, 2293
BpiI	GAAGAC	4 cut(s)	409, 1713, 2219, 2522
BpmI	CTGGAG	1 cut(s)	1512
Bpu10I	CCTNAGC	4 cut(s)	594, 1131, 2073, 2475
Bpu1102I	GCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	2306
BpuEI	CTTGAG	1 cut(s)	2522
BpuMI	CCSGG	3 cut(s)	258, 259, 516
Bsa29I	ATCGAT	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	1835
BsaBI	GATNNNNATC	1 cut(s)	1536
BsaHI	GRCGYC	1 cut(s)	265
BsaI	GGTCTC	2 cut(s)	930, 2311
BsaJI	CCNNGG	6 cut(s)	257, 258, 515, 1816, 2182, 2563
BsaXI	ACNNNNNCTCC	4 cut(s)	927, 957, 2018, 2048
Bsc4I	CCNNNNNNNGG	5 cut(s)	1349, 1991, 2044, 2327, 2564
Bse1I	ACTGG	3 cut(s)	941, 1391, 2288
Bse3DI	GCAATG	2 cut(s)	1647, 1985
Bse8I	GATNNNNATC	1 cut(s)	1536
BseBI	CCWGG	4 cut(s)	283, 383, 1751, 2183
BseCI	ATCGAT	1 cut(s)	46
BseDI	CCNNGG	6 cut(s)	257, 258, 515, 1816, 2182, 2563
BseGI	GGATG	4 cut(s)	253, 342, 910, 2391
BseJI	GATNNNNATC	1 cut(s)	1536
BseLI	CCNNNNNNNGG	5 cut(s)	1349, 1991, 2044, 2327, 2564
BseMI	GCAATG	2 cut(s)	1647, 1985
BseNI	ACTGG	3 cut(s)	941, 1391, 2288
BseRI	GAGGAG	2 cut(s)	650, 2505
Bsh1236I	CGCG	1 cut(s)	1999
BshFI	GGCC	7 cut(s)	136, 381, 786, 1601, 1623, 1789, 1905
BshNI	GGYRCC	1 cut(s)	1678
BshVI	ATCGAT	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	258, 515, 787
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	5 cut(s)	1349, 1991, 2044, 2327, 2564
BsmAI	GTCTC	4 cut(s)	233, 930, 1295, 2311
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	276
BsmI	GAATGC	3 cut(s)	989, 1365, 2536
BsnI	GGCC	7 cut(s)	136, 381, 786, 1601, 1623, 1789, 1905
Bso31I	GGTCTC	2 cut(s)	930, 2311
BsoBI	CYCGRG	1 cut(s)	257
Bsp119I	TTCGAA	1 cut(s)	2306
Bsp1286I	GDGCHC	3 cut(s)	357, 366, 1237
Bsp1407I	TGTACA	1 cut(s)	2524
Bsp1720I	GCTNAGC	1 cut(s)	351
BspANI	GGCC	7 cut(s)	136, 381, 786, 1601, 1623, 1789, 1905
BspDI	ATCGAT	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	1999
BspHI	TCATGA	2 cut(s)	778, 1912
BspLI	GGNNCC	5 cut(s)	325, 567, 927, 1680, 2569
BspMAI	CTGCAG	3 cut(s)	1087, 1274, 1597
BspMI	ACCTGC	2 cut(s)	212, 1090
BspOI	GCTAGC	1 cut(s)	1974
BspPI	GGATC	4 cut(s)	1116, 1334, 1807, 1987
BspT104I	TTCGAA	1 cut(s)	2306
BspT107I	GGYRCC	1 cut(s)	1678
BspTNI	GGTCTC	2 cut(s)	930, 2311
BsrBI	CCGCTC	1 cut(s)	1247
BsrDI	GCAATG	2 cut(s)	1647, 1985
BsrGI	TGTACA	1 cut(s)	2524
BsrI	ACTGG	3 cut(s)	941, 1391, 2288
BssECI	CCNNGG	6 cut(s)	257, 258, 515, 1816, 2182, 2563
BssNAI	GTATAC	1 cut(s)	227
BssNI	GRCGYC	1 cut(s)	265
BssT1I	CCWWGG	2 cut(s)	1816, 2563
Bst1107I	GTATAC	1 cut(s)	227
Bst2UI	CCWGG	4 cut(s)	283, 383, 1751, 2183
Bst4CI	ACNGT	8 cut(s)	244, 559, 1170, 1619, 1860, 1994, 2195, 2403
Bst6I	CTCTTC	2 cut(s)	776, 1816
BstACI	GRCGYC	1 cut(s)	265
BstAUI	TGTACA	1 cut(s)	2524
BstBAI	YACGTR	1 cut(s)	1835
BstBI	TTCGAA	1 cut(s)	2306
BstC8I	GCNNGC	3 cut(s)	1972, 2130, 2353
BstENI	CCTNNNNNAGG	1 cut(s)	2562
BstF5I	GGATG	4 cut(s)	253, 342, 910, 2391
BstFNI	CGCG	1 cut(s)	1999
BstH2I	RGCGCY	1 cut(s)	2294
BstHHI	GCGC	3 cut(s)	2001, 2293, 2471
BstMAI	GTCTC	4 cut(s)	233, 930, 1295, 2311
BstNI	CCWGG	4 cut(s)	283, 383, 1751, 2183
BstNSI	RCATGY	5 cut(s)	92, 1500, 2084, 2175, 2355
BstSCI	CCNGG	7 cut(s)	256, 257, 281, 381, 514, 1749, 2181
BstSFI	CTRYAG	4 cut(s)	930, 1083, 1270, 1593
BstUI	CGCG	1 cut(s)	1999
BstV2I	GAAGAC	4 cut(s)	409, 1713, 2219, 2522
BstX2I	RGATCY	1 cut(s)	1979
BstYI	RGATCY	1 cut(s)	1979
BstZ17I	GTATAC	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	7 cut(s)	136, 381, 786, 1601, 1623, 1789, 1905
BsuTUI	ATCGAT	1 cut(s)	46
BtgZI	GCGATG	3 cut(s)	630, 1002, 1823
BtsCI	GGATG	4 cut(s)	253, 342, 910, 2391
BtsI	GCAGTG	2 cut(s)	1602, 1710
BtsIMutI	CAGTG	6 cut(s)	1166, 1398, 1602, 1710, 1743, 2236
BveI	ACCTGC	2 cut(s)	212, 1090
Cac8I	GCNNGC	3 cut(s)	1972, 2130, 2353
CciI	TCATGA	2 cut(s)	778, 1912
CfoI	GCGC	3 cut(s)	2001, 2293, 2471
Cfr13I	GGNCC	6 cut(s)	134, 379, 727, 926, 1903, 1994
Cfr9I	CCCGGG	1 cut(s)	257
ClaI	ATCGAT	1 cut(s)	46
CpoI	CGGWCCG	1 cut(s)	1994
CsiI	ACCWGGT	1 cut(s)	1749
Csp6I	GTAC	7 cut(s)	574, 1037, 1375, 1456, 1679, 2121, 2525
CspI	CGGWCCG	1 cut(s)	1994
CviQI	GTAC	7 cut(s)	574, 1037, 1375, 1456, 1679, 2121, 2525
DraI	TTTAAA	1 cut(s)	1326
EaeI	YGGCCR	3 cut(s)	784, 1599, 1621
Eam1104I	CTCTTC	2 cut(s)	776, 1816
EarI	CTCTTC	2 cut(s)	776, 1816
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	2 cut(s)	1816, 2563
Eco147I	AGGCCT	1 cut(s)	1789
Eco24I	GRGCYC	3 cut(s)	357, 366, 1237
Eco31I	GGTCTC	2 cut(s)	930, 2311
Eco32I	GATATC	1 cut(s)	1449
Eco47I	GGWCC	3 cut(s)	727, 926, 1994
Eco47III	AGCGCT	1 cut(s)	2292
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	3 cut(s)	524, 1901, 2114
Eco72I	CACGTG	1 cut(s)	1835
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	2562
EcoO109I	RGGNCCY	1 cut(s)	926
EcoRI	GAATTC	2 cut(s)	1799, 2219
EcoRII	CCWGG	4 cut(s)	281, 381, 1749, 2181
EcoRV	GATATC	1 cut(s)	1449
EcoT14I	CCWWGG	2 cut(s)	1816, 2563
EcoT22I	ATGCAT	2 cut(s)	1491, 2357
EcoT38I	GRGCYC	3 cut(s)	357, 366, 1237
ErhI	CCWWGG	2 cut(s)	1816, 2563
Esp3I	CGTCTC	1 cut(s)	233
FalI	AAGNNNNNCTT	2 cut(s)	1874, 1906
FaqI	GGGAC	1 cut(s)	276
FbaI	TGATCA	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	226
FokI	GGATG	4 cut(s)	240, 329, 917, 2378
FriOI	GRGCYC	3 cut(s)	357, 366, 1237
FspBI	CTAG	7 cut(s)	672, 1646, 1971, 2022, 2111, 2118, 2575
FspI	TGCGCA	1 cut(s)	2470
GlaI	GCGC	3 cut(s)	2000, 2292, 2470
GsuI	CTGGAG	1 cut(s)	1512
HaeII	RGCGCY	1 cut(s)	2294
HaeIII	GGCC	7 cut(s)	136, 381, 786, 1601, 1623, 1789, 1905
HapII	CCGG	3 cut(s)	258, 515, 787
HhaI	GCGC	3 cut(s)	2001, 2293, 2471
Hin1I	GRCGYC	1 cut(s)	265
Hin6I	GCGC	3 cut(s)	1999, 2291, 2469
HinP1I	GCGC	3 cut(s)	1999, 2291, 2469
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	1263
HpaII	CCGG	3 cut(s)	258, 515, 787
HphI	GGTGA	6 cut(s)	738, 1071, 1421, 1492, 1509, 1751
Hpy166II	GTNNAC	5 cut(s)	227, 576, 802, 946, 1289
Hpy8I	GTNNAC	5 cut(s)	227, 576, 802, 946, 1289
Hpy99I	CGWCG	1 cut(s)	1629
HpyAV	CCTTC	7 cut(s)	443, 504, 860, 1442, 1876, 2011, 2302
HpyCH4III	ACNGT	8 cut(s)	244, 559, 1170, 1619, 1860, 1994, 2195, 2403
HpyCH4IV	ACGT	6 cut(s)	9, 265, 1291, 1313, 1834, 2519
HpySE526I	ACGT	6 cut(s)	9, 265, 1291, 1313, 1834, 2519
Hsp92I	GRCGYC	1 cut(s)	265
HspAI	GCGC	3 cut(s)	1999, 2291, 2469
KpnI	GGTACC	1 cut(s)	1682
Ksp22I	TGATCA	1 cut(s)	292
LmnI	GCTCC	4 cut(s)	207, 1569, 1670, 2567
LweI	GCATC	7 cut(s)	216, 262, 681, 1090, 1186, 2160, 2350
MabI	ACCWGGT	1 cut(s)	1749
MaeI	CTAG	7 cut(s)	672, 1646, 1971, 2022, 2111, 2118, 2575
MaeII	ACGT	6 cut(s)	9, 265, 1291, 1313, 1834, 2519
MaeIII	GTNAC	8 cut(s)	104, 335, 1219, 1239, 1314, 1380, 1427, 1739
MbiI	CCGCTC	1 cut(s)	1247
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	1979
MhlI	GDGCHC	3 cut(s)	357, 366, 1237
MlsI	TGGCCA	1 cut(s)	1601
MluNI	TGGCCA	1 cut(s)	1601
MlyI	GAGTC	6 cut(s)	109, 152, 677, 851, 1061, 2069
MmeI	TCCRAC	3 cut(s)	196, 1152, 1591
Mox20I	TGGCCA	1 cut(s)	1601
Mph1103I	ATGCAT	2 cut(s)	1491, 2357
MroXI	GAANNNNTTC	1 cut(s)	1886
MscI	TGGCCA	1 cut(s)	1601
MseI	TTAA	9 cut(s)	213, 914, 1062, 1154, 1325, 1416, 1691, 2253, 2552
MslI	CAYNNNNRTG	1 cut(s)	1869
Msp20I	TGGCCA	1 cut(s)	1601
MspA1I	CMGCKG	1 cut(s)	1202
MspI	CCGG	3 cut(s)	258, 515, 787
MspR9I	CCNGG	7 cut(s)	258, 259, 283, 383, 516, 1751, 2183
MunI	CAATTG	1 cut(s)	138
Mva1269I	GAATGC	3 cut(s)	989, 1365, 2536
MvaI	CCWGG	4 cut(s)	283, 383, 1751, 2183
MvnI	CGCG	1 cut(s)	1999
NciI	CCSGG	3 cut(s)	258, 259, 516
NheI	GCTAGC	1 cut(s)	1970
NlaIV	GGNNCC	5 cut(s)	325, 567, 927, 1680, 2569
NmuCI	GTSAC	2 cut(s)	1427, 1739
NsbI	TGCGCA	1 cut(s)	2470
NsiI	ATGCAT	2 cut(s)	1491, 2357
NspI	RCATGY	5 cut(s)	92, 1500, 2084, 2175, 2355
NspV	TTCGAA	1 cut(s)	2306
PaeI	GCATGC	1 cut(s)	2355
PagI	TCATGA	2 cut(s)	778, 1912
PaqCI	CACCTGC	1 cut(s)	1090
PceI	AGGCCT	1 cut(s)	1789
PciI	ACATGT	2 cut(s)	88, 2171
PctI	GAATGC	3 cut(s)	989, 1365, 2536
PdmI	GAANNNNTTC	1 cut(s)	1886
PleI	GAGTC	6 cut(s)	108, 152, 677, 850, 1060, 2068
PmaCI	CACGTG	1 cut(s)	1835
PmlI	CACGTG	1 cut(s)	1835
PpsI	GAGTC	6 cut(s)	108, 152, 677, 850, 1060, 2068
Ppu21I	YACGTR	1 cut(s)	1835
PpuMI	RGGWCCY	1 cut(s)	926
PscI	ACATGT	2 cut(s)	88, 2171
PshBI	ATTAAT	2 cut(s)	1154, 1416
Psp124BI	GAGCTC	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	1313
Psp5II	RGGWCCY	1 cut(s)	926
Psp6I	CCWGG	4 cut(s)	281, 381, 1749, 2181
PspCI	CACGTG	1 cut(s)	1835
PspGI	CCWGG	4 cut(s)	281, 381, 1749, 2181
PspN4I	GGNNCC	5 cut(s)	325, 567, 927, 1680, 2569
PspPI	GGNCC	6 cut(s)	134, 379, 727, 926, 1903, 1994
PspPPI	RGGWCCY	1 cut(s)	926
PstI	CTGCAG	3 cut(s)	1087, 1274, 1597
PsuI	RGATCY	1 cut(s)	1979
RsaI	GTAC	7 cut(s)	575, 1038, 1376, 1457, 1680, 2122, 2526
RsaNI	GTAC	7 cut(s)	574, 1037, 1375, 1456, 1679, 2121, 2525
RseI	CAYNNNNRTG	1 cut(s)	1869
Rsr2I	CGGWCCG	1 cut(s)	1994
RsrII	CGGWCCG	1 cut(s)	1994
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	9 cut(s)	213, 914, 1062, 1154, 1325, 1416, 1691, 2253, 2552
Sau96I	GGNCC	6 cut(s)	134, 379, 727, 926, 1903, 1994
ScaI	AGTACT	1 cut(s)	1457
SchI	GAGTC	6 cut(s)	109, 152, 677, 851, 1061, 2069
ScrFI	CCNGG	7 cut(s)	258, 259, 283, 383, 516, 1751, 2183
SduI	GDGCHC	3 cut(s)	357, 366, 1237
SexAI	ACCWGGT	1 cut(s)	1749
SfaNI	GCATC	7 cut(s)	216, 262, 681, 1090, 1186, 2160, 2350
SfcI	CTRYAG	4 cut(s)	930, 1083, 1270, 1593
SfuI	TTCGAA	1 cut(s)	2306
SinI	GGWCC	3 cut(s)	727, 926, 1994
SmaI	CCCGGG	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	1869
SmlI	CTYRAG	1 cut(s)	2501
SmoI	CTYRAG	1 cut(s)	2501
SphI	GCATGC	1 cut(s)	2355
SseBI	AGGCCT	1 cut(s)	1789
SspI	AATATT	1 cut(s)	1002
SspMI	CTAG	7 cut(s)	672, 1646, 1971, 2022, 2111, 2118, 2575
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	1789
StyD4I	CCNGG	7 cut(s)	256, 257, 281, 381, 514, 1749, 2181
StyI	CCWWGG	2 cut(s)	1816, 2563
TaaI	ACNGT	8 cut(s)	244, 559, 1170, 1619, 1860, 1994, 2195, 2403
TaiI	ACGT	6 cut(s)	12, 268, 1294, 1316, 1837, 2522
TaqI	TCGA	8 cut(s)	46, 151, 161, 474, 1627, 2058, 2306, 2541
TatI	WGTACW	4 cut(s)	573, 1374, 1455, 2524
TauI	GCSGC	3 cut(s)	1202, 1250, 2462
Tru1I	TTAA	9 cut(s)	213, 914, 1062, 1154, 1325, 1416, 1691, 2253, 2552
Tru9I	TTAA	9 cut(s)	213, 914, 1062, 1154, 1325, 1416, 1691, 2253, 2552
TscAI	CASTG	6 cut(s)	1173, 1398, 1602, 1717, 1750, 2236
TseFI	GTSAC	2 cut(s)	1427, 1739
Tsp45I	GTSAC	2 cut(s)	1427, 1739
TspMI	CCCGGG	1 cut(s)	257
TspRI	CASTG	6 cut(s)	1173, 1398, 1602, 1717, 1750, 2236
VpaK11BI	GGWCC	3 cut(s)	727, 926, 1994
VspI	ATTAAT	2 cut(s)	1154, 1416
XagI	CCTNNNNNAGG	1 cut(s)	2562
XapI	RAATTY	9 cut(s)	712, 758, 1022, 1144, 1211, 1548, 1799, 1874, 2219
XceI	RCATGY	5 cut(s)	92, 1500, 2084, 2175, 2355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmaI	CCCGGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	1886
XspI	CTAG	7 cut(s)	672, 1646, 1971, 2022, 2111, 2118, 2575
ZraI	GACGTC	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	1457
Zsp2I	ATGCAT	2 cut(s)	1491, 2357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.