Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017048.1

Orthogroup ID

OG0015190

Physical Location & Seq

Genomic Coordinates Reverse (-)

2551 .. 8700

Gene Structure 6150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017048.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2784 bp

atggcgaacgtctcggtcgccgcggagtggcaactcctctacaaccggtactaccgtaagcccgaggtctaccgcatgacgtggagccacgtggacatcagccgcaacaaggtcgcctgcgcccccttcggcggccccatcgccgtcatccgcgacgactccaagatcgtccagctccgcggcgagtccgcccagcgcaagctccgcatcttcaattcctcggggctcttactcggcgagaccatctggaaacaccccggcgggcggttgatcggcatggcctggaccgacgaccaaaccctagtctgcctcgtccaggacggcaccgtcttccgctacaacatccacgccgagatcgtcgagccgagcatctccatggggaaggagtgcttcgagcgcaacgtcgtcgactgcgtcttctgggggaacggcgtcgtttgcatcaccgagtcgaatcagctcttttgcatatcggatttccagaacccgaacccggtccagctcgccgacccggggatcgaggacccgccgctctgtatggccgtgatcgagccgcagtatactatgtccggcaacgtggaggttctgcttgggatttcagagccttgggttctggccgtggaggaagacggcgtgcagcagttaggggttgacgtcctacgtggaccgctgcagaagatggcggtttctcgcgacggtcagtggcttgcttcgttcactcacgacggccggttattggtcatgacttcgaatctcaatgaaatcctgattgagcaggaatgcgagtcagcgcttcctccagaacagctggcgtggtgtggaatggacacagtgttgctatattgggatgatatactgttaatgatgggtcctcgaggggatcctgtgcggtacttttatgacgaacccgttattctcattcccgagtgtgatggagtgaggatattgtccaactccagtatggaatttcttcaacgtgtacctgattctactgaatccatctttaagattggaagtacatcgcctgcagctttgttgttcgatgctttggatcattttgacagaagaagtgccaaggcagatgagaatttgcgactaatacgtgcatccttgtcggaggctgttgaagcatgtattgatgctgccggtcatgaatttgatctctcacgtcaacagacactgctaagagctgcaagctatggtcaagccttttgcaggttagttttgtgtgatattgcagtagaatatgatcattctgatatttttgttggctttggcagcaattttcaacgtgatcatattcaagagatgtgtaaaattttgcgagtattaaatgctgtgcggcatcctgatgttggaatgcctcttagtattcaacaatacaaggtgcttacaccatctgttctgatcggtcggttgattaattcctacaagcatcttcttgcactacggatatcagaataccttggaatgaatcaagaaatggtgataatgcactggacatgttcaaagataacagcttccctggcaattcctgatgctactcttcttgaaatcttacttgataagttgaaactatgcaaaggaatatcttatgcagcggttgctgctcatgctgataagaatggccgccggaagttagccgctatgcttgttgaacatgaaccacggtcttccaaacaggttcctctcttgttgagcataggagaagaagatacagctttaacgaaggcaattgaaagtggtgatacagaccttgtttatcttgttctgtttcatatctggcaaaagagagaacctttggcatttttcaaaatgttacacccgaaacccctggcgcgcgatttgtttgtgatttatgcacggtgctataaacatgaatttttgaaggacttcttcctatcggctggacaacttcaggaggtggctttccttgtgtggaaagaatgttgggaactcgggaaaaatccaatggcaagcagaggatctcccctgcatggtccgcgcattaaactaattgagcaggccaagaatctcttcggaggagctagtaaggacaaggaatccaatagtctctttggagaaactaataaggataaggactttacctttgaattaaaggctgctgaagaacatgcaaaattgttgagaatgcagcatgatctagaagtgtcaacaaagcaggctatttttgttgattctagtatcagtgatacaatccgaacttgtattgtgctgggaaatcataaagcagcaatgaaagtgaaaactgaatttaaggtttctgagaagagatggtattggctgaaagtttttgctctggctacagtcagagattgggagaccctggagaagttttcaaaagaaaagagaccaccaattggttacaggccatttgttgaggcatgcattgaagcagatgaaagaggggaagctttgaaatatatcccaaaactcacggatcctcgagaaagagctgagtcttatggtcggattggcatggccaaggaagctgctgatgctgcctctcaggcaaaagatggggaattgcttggccgactaagattgacgttttcacaaaatcctgcagcttcatcaatttttgatacccttcgagatcgattgggctcttatggtcggattggcatggccaaggaagctgctgatgctgcctctcaggcaaaagatggggaattgcttggccgactaagattgacgttttcacaaaatcctgcagcttcatcaatttttgatacccttcgagatcgattgggcgtttcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005856 GO:0006810 GO:0006906 GO:0006996 GO:0007033 GO:0008092 GO:0008150 GO:0009705 GO:0009987 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030897 GO:0031090 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032889 GO:0032991 GO:0033043 GO:0033263 GO:0035542 GO:0042144 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044088 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045992 GO:0045995 GO:0046907 GO:0048284 GO:0048519 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051093 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051469 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097576 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0099023 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Vps16_C Vps16_N

Protein Analysis

927

Amino Acids

104.12

Weight (kDa)

5.89

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38020 AT2G38020
fragaria_vesca	FvH4_6g38590 FvH4_6g38590
malus_domestica	MD17G1136200.v1.1
prunus_persica	Prupe.3G176600_v2.0.a1 Prupe.3G176600_v2.0.a1
pyrus_communis	pycom17g12990
rosa_chinensis	RchiOBHm_Chr2g0152001
rosa_laevigata	RLG00000020599
rosa_multiflora	Rmu_sc0017048.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096060
rosa_rugosa	Rorug02G0430200 Rorug02G0430300
rosa_samantha	Rh2BG503200
rosa_wichuraiana	Rw2G040350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AatII	GACGTC	1 cut(s)	657
AbsI	CCTCGAGG	1 cut(s)	873
Acc36I	ACCTGC	1 cut(s)	1206
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	1 cut(s)	2381
AccBSI	CCGCTC	1 cut(s)	532
AccI	GTMKAC	3 cut(s)	69, 408, 560
AccII	CGCG	7 cut(s)	23, 153, 180, 693, 1840, 1842, 2005
AclWI	GGATC	7 cut(s)	524, 875, 888, 1059, 1993, 2456, 2469
AcoI	YGGCCR	8 cut(s)	540, 615, 727, 1627, 2502, 2554, 2649, 2701
AcsI	RAATTY	6 cut(s)	965, 1087, 1154, 1317, 1880, 2273
AcuI	CTGAAG	2 cut(s)	1901, 2148
AcvI	CACGTG	1 cut(s)	91
AcyI	GRCGYC	2 cut(s)	432, 654
AfaI	GTAC	4 cut(s)	50, 893, 981, 1018
AfeI	AGCGCT	1 cut(s)	792
AflIII	ACRYGT	2 cut(s)	976, 1502
AgeI	ACCGGT	1 cut(s)	45
AjiI	CACGTC	2 cut(s)	81, 1169
AjnI	CCWGG	5 cut(s)	281, 315, 1524, 1833, 2346
AjuI	GAANNNNNNNTTGG	2 cut(s)	2021, 2053
Alw26I	GTCTC	5 cut(s)	16, 233, 2078, 2336, 2365
AlwI	GGATC	7 cut(s)	524, 875, 888, 1059, 1993, 2456, 2469
AlwNI	CAGNNNCTG	1 cut(s)	1180
Ama87I	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1958, 2466
Aor51HI	AGCGCT	1 cut(s)	792
ApoI	RAATTY	6 cut(s)	965, 1087, 1154, 1317, 1880, 2273
ArsI	GACNNNNNNTTYG	2 cut(s)	2093, 2125
AseI	ATTAAT	1 cut(s)	1422
AsiGI	ACCGGT	1 cut(s)	45
Asp700I	GAANNNNTTC	3 cut(s)	969, 1892, 2036
AspLEI	GCGC	7 cut(s)	122, 198, 399, 793, 1840, 1842, 2007
AspS9I	GGNCC	7 cut(s)	134, 285, 496, 523, 665, 869, 2000
AsuC2I	CCSGG	4 cut(s)	258, 494, 512, 513
AsuHPI	GGTGA	3 cut(s)	436, 1498, 1757
AsuII	TTCGAA	1 cut(s)	749
AvaI	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1958, 2466
AvaII	GGWCC	6 cut(s)	285, 496, 523, 665, 869, 2000
BaeI	ACNNNNGTAYC	2 cut(s)	40, 73
BalI	TGGCCA	2 cut(s)	2504, 2651
BamHI	GGATCC	2 cut(s)	880, 2461
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	2 cut(s)	228, 2630
BbrPI	CACGTG	1 cut(s)	91
BbsI	GAAGAC	4 cut(s)	322, 409, 633, 1665
BceAI	ACGGC	7 cut(s)	128, 337, 445, 527, 602, 646, 742
BcgI	CGANNNNNNTGC	6 cut(s)	94, 128, 388, 422, 1095, 1129
BciT130I	CCWGG	5 cut(s)	283, 317, 1526, 1835, 2348
BclI	TGATCA	2 cut(s)	1249, 1294
BcnI	CCSGG	4 cut(s)	258, 494, 512, 513
BcoDI	GTCTC	5 cut(s)	16, 233, 2078, 2336, 2365
BfaI	CTAG	4 cut(s)	302, 2049, 2165, 2202
BfmI	CTRYAG	5 cut(s)	671, 1026, 2325, 2586, 2733
BfoI	RGCGCY	1 cut(s)	794
BfuAI	ACCTGC	1 cut(s)	1206
BglI	GCCNNNNNGGC	2 cut(s)	2531, 2678
Bme1390I	CCNGG	9 cut(s)	258, 283, 317, 494, 512, 513, 1526, 1835, 2348
Bme18I	GGWCC	6 cut(s)	285, 496, 523, 665, 869, 2000
BmeT110I	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1958, 2466
BmgBI	CACGTC	2 cut(s)	81, 1169
BmgT120I	GGNCC	7 cut(s)	134, 285, 496, 523, 665, 869, 2000
BmiI	GGNNCC	8 cut(s)	86, 136, 325, 525, 870, 882, 1686, 2463
BmrFI	CCNGG	9 cut(s)	258, 283, 317, 494, 512, 513, 1526, 1835, 2348
BpiI	GAAGAC	4 cut(s)	322, 409, 633, 1665
BpmI	CTGGAG	3 cut(s)	783, 940, 2369
Bpu14I	TTCGAA	1 cut(s)	749
BpuMI	CCSGG	4 cut(s)	258, 494, 512, 513
Bsa29I	ATCGAT	2 cut(s)	2620, 2767
BsaAI	YACGTR	3 cut(s)	91, 662, 1103
BsaHI	GRCGYC	2 cut(s)	432, 654
BsaI	GGTCTC	3 cut(s)	233, 2336, 2365
BsaWI	WCCGGW	1 cut(s)	45
Bse118I	RCCGGY	3 cut(s)	45, 729, 1145
Bse1I	ACTGG	2 cut(s)	957, 1502
Bse3DI	GCAATG	1 cut(s)	2262
BseBI	CCWGG	5 cut(s)	283, 317, 1526, 1835, 2348
BseCI	ATCGAT	2 cut(s)	2620, 2767
BseGI	GGATG	5 cut(s)	147, 342, 853, 1106, 1345
BseMI	GCAATG	1 cut(s)	2262
BseMII	CTCAG	4 cut(s)	2277, 2469, 2543, 2690
BseNI	ACTGG	2 cut(s)	957, 1502
BsePI	GCGCGC	1 cut(s)	1838
BseRI	GAGGAG	2 cut(s)	26, 2058
BseX3I	CGGCCG	1 cut(s)	727
BseYI	CCCAGC	2 cut(s)	192, 2236
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	7 cut(s)	23, 153, 180, 693, 1840, 1842, 2005
Bsh1285I	CGRYCG	3 cut(s)	18, 730, 1414
BshNI	GGYRCC	1 cut(s)	323
BshTI	ACCGGT	1 cut(s)	45
BshVI	ATCGAT	2 cut(s)	2620, 2767
BsiEI	CGRYCG	3 cut(s)	18, 730, 1414
BsiHKCI	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1958, 2466
BsiSI	CCGG	8 cut(s)	46, 258, 494, 512, 570, 730, 1146, 1633
BsmAI	GTCTC	5 cut(s)	16, 233, 2078, 2336, 2365
BsmBI	CGTCTC	1 cut(s)	16
BsmI	GAATGC	3 cut(s)	785, 1365, 2157
Bso31I	GGTCTC	3 cut(s)	233, 2336, 2365
BsoBI	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1958, 2466
Bsp119I	TTCGAA	1 cut(s)	749
Bsp1286I	GDGCHC	2 cut(s)	228, 2630
Bsp19I	CCATGG	1 cut(s)	375
Bsp68I	TCGCGA	1 cut(s)	693
BspCNI	CTCAG	4 cut(s)	2278, 2470, 2542, 2689
BspDI	ATCGAT	2 cut(s)	2620, 2767
BspFNI	CGCG	7 cut(s)	23, 153, 180, 693, 1840, 1842, 2005
BspHI	TCATGA	2 cut(s)	741, 1150
BspLI	GGNNCC	8 cut(s)	86, 136, 325, 525, 870, 882, 1686, 2463
BspMAI	CTGCAG	4 cut(s)	675, 1030, 2590, 2737
BspMI	ACCTGC	1 cut(s)	1206
BspPI	GGATC	7 cut(s)	524, 875, 888, 1059, 1993, 2456, 2469
BspT104I	TTCGAA	1 cut(s)	749
BspT107I	GGYRCC	1 cut(s)	323
BspTNI	GGTCTC	3 cut(s)	233, 2336, 2365
BsrBI	CCGCTC	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	2262
BsrFI	RCCGGY	3 cut(s)	45, 729, 1145
BsrI	ACTGG	2 cut(s)	957, 1502
BssAI	RCCGGY	3 cut(s)	45, 729, 1145
BssHII	GCGCGC	1 cut(s)	1838
BssNAI	GTATAC	1 cut(s)	561
BssNI	GRCGYC	2 cut(s)	432, 654
BssT1I	CCWWGG	6 cut(s)	375, 605, 1074, 1465, 2505, 2652
Bst1107I	GTATAC	1 cut(s)	561
Bst2UI	CCWGG	5 cut(s)	283, 317, 1526, 1835, 2348
Bst4CI	ACNGT	8 cut(s)	56, 328, 698, 832, 858, 1671, 1866, 2329
Bst6I	CTCTTC	3 cut(s)	1551, 2042, 2285
BstACI	GRCGYC	2 cut(s)	432, 654
BstAPI	GCANNNNNTGC	1 cut(s)	1604
BstBAI	YACGTR	3 cut(s)	91, 662, 1103
BstBI	TTCGAA	1 cut(s)	749
BstDEI	CTNAG	8 cut(s)	1184, 1367, 2286, 2478, 2529, 2561, 2676, 2708
BstDSI	CCRYGG	5 cut(s)	21, 178, 375, 618, 1667
BstENI	CCTNNNNNAGG	2 cut(s)	314, 1213
BstF5I	GGATG	5 cut(s)	147, 342, 853, 1106, 1345
BstFNI	CGCG	7 cut(s)	23, 153, 180, 693, 1840, 1842, 2005
BstH2I	RGCGCY	1 cut(s)	794
BstHHI	GCGC	7 cut(s)	122, 198, 399, 793, 1840, 1842, 2007
BstMAI	GTCTC	5 cut(s)	16, 233, 2078, 2336, 2365
BstMCI	CGRYCG	3 cut(s)	18, 730, 1414
BstNI	CCWGG	5 cut(s)	283, 317, 1526, 1835, 2348
BstNSI	RCATGY	4 cut(s)	1134, 1506, 2138, 2409
BstSCI	CCNGG	9 cut(s)	256, 281, 315, 492, 510, 511, 1524, 1833, 2346
BstSFI	CTRYAG	5 cut(s)	671, 1026, 2325, 2586, 2733
BstUI	CGCG	7 cut(s)	23, 153, 180, 693, 1840, 1842, 2005
BstV2I	GAAGAC	4 cut(s)	322, 409, 633, 1665
BstX2I	RGATCY	3 cut(s)	880, 1985, 2461
BstYI	RGATCY	3 cut(s)	880, 1985, 2461
BstZ17I	GTATAC	1 cut(s)	561
BstZI	CGGCCG	1 cut(s)	727
Bsu15I	ATCGAT	2 cut(s)	2620, 2767
BsuTUI	ATCGAT	2 cut(s)	2620, 2767
BtgI	CCRYGG	5 cut(s)	21, 178, 375, 618, 1667
BtgZI	GCGATG	2 cut(s)	124, 1005
BtrI	CACGTC	2 cut(s)	81, 1169
BtsCI	GGATG	5 cut(s)	147, 342, 853, 1106, 1345
BtsI	GCAGTG	1 cut(s)	1178
BtsIMutI	CAGTG	5 cut(s)	707, 837, 1178, 1495, 2215
BtuMI	TCGCGA	1 cut(s)	693
BveI	ACCTGC	1 cut(s)	1206
CaiI	CAGNNNCTG	1 cut(s)	1180
CciI	TCATGA	2 cut(s)	741, 1150
CfoI	GCGC	7 cut(s)	122, 198, 399, 793, 1840, 1842, 2007
Cfr10I	RCCGGY	3 cut(s)	45, 729, 1145
Cfr13I	GGNCC	7 cut(s)	134, 285, 496, 523, 665, 869, 2000
Cfr42I	CCGCGG	2 cut(s)	24, 181
Cfr9I	CCCGGG	1 cut(s)	511
ClaI	ATCGAT	2 cut(s)	2620, 2767
CseI	GACGC	2 cut(s)	403, 421
Csp6I	GTAC	4 cut(s)	49, 892, 980, 1017
CspAI	ACCGGT	1 cut(s)	45
CviQI	GTAC	4 cut(s)	49, 892, 980, 1017
DdeI	CTNAG	8 cut(s)	1184, 1367, 2286, 2478, 2529, 2561, 2676, 2708
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	8 cut(s)	540, 615, 727, 1627, 2502, 2554, 2649, 2701
EagI	CGGCCG	1 cut(s)	727
Eam1104I	CTCTTC	3 cut(s)	1551, 2042, 2285
EarI	CTCTTC	3 cut(s)	1551, 2042, 2285
EciI	GGCGGA	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	727
Eco130I	CCWWGG	6 cut(s)	375, 605, 1074, 1465, 2505, 2652
Eco24I	GRGCYC	2 cut(s)	228, 2630
Eco31I	GGTCTC	3 cut(s)	233, 2336, 2365
Eco32I	GATATC	1 cut(s)	1455
Eco47I	GGWCC	6 cut(s)	285, 496, 523, 665, 869, 2000
Eco47III	AGCGCT	1 cut(s)	792
Eco52I	CGGCCG	1 cut(s)	727
Eco57I	CTGAAG	2 cut(s)	1901, 2148
Eco72I	CACGTG	1 cut(s)	91
Eco88I	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1958, 2466
EcoNI	CCTNNNNNAGG	2 cut(s)	314, 1213
EcoO109I	RGGNCCY	2 cut(s)	523, 869
EcoRII	CCWGG	5 cut(s)	281, 315, 1524, 1833, 2346
EcoRV	GATATC	1 cut(s)	1455
EcoT14I	CCWWGG	6 cut(s)	375, 605, 1074, 1465, 2505, 2652
EcoT22I	ATGCAT	1 cut(s)	2411
EcoT38I	GRGCYC	2 cut(s)	228, 2630
ErhI	CCWWGG	6 cut(s)	375, 605, 1074, 1465, 2505, 2652
Esp3I	CGTCTC	1 cut(s)	16
FalI	AAGNNNNNCTT	6 cut(s)	374, 406, 1880, 1912, 2021, 2053
FauI	CCCGC	2 cut(s)	254, 534
FbaI	TGATCA	2 cut(s)	1249, 1294
FblI	GTMKAC	3 cut(s)	69, 408, 560
FokI	GGATG	5 cut(s)	134, 329, 860, 1093, 1332
FriOI	GRGCYC	2 cut(s)	228, 2630
FspBI	CTAG	4 cut(s)	302, 2049, 2165, 2202
GlaI	GCGC	7 cut(s)	121, 197, 398, 792, 1839, 1841, 2006
GsaI	CCCAGC	2 cut(s)	196, 2240
GsuI	CTGGAG	3 cut(s)	783, 940, 2369
HaeII	RGCGCY	1 cut(s)	794
HapII	CCGG	8 cut(s)	46, 258, 494, 512, 570, 730, 1146, 1633
HgaI	GACGC	2 cut(s)	403, 421
HhaI	GCGC	7 cut(s)	122, 198, 399, 793, 1840, 1842, 2007
Hin1I	GRCGYC	2 cut(s)	432, 654
Hin6I	GCGC	7 cut(s)	120, 196, 397, 791, 1838, 1840, 2005
HinP1I	GCGC	7 cut(s)	120, 196, 397, 791, 1838, 1840, 2005
HincII	GTYRAC	4 cut(s)	409, 652, 1172, 2175
HindII	GTYRAC	4 cut(s)	409, 652, 1172, 2175
HindIII	AAGCTT	1 cut(s)	2433
HpaII	CCGG	8 cut(s)	46, 258, 494, 512, 570, 730, 1146, 1633
HphI	GGTGA	3 cut(s)	436, 1498, 1757
Hpy99I	CGWCG	8 cut(s)	158, 293, 362, 407, 410, 437, 698, 728
HpyAV	CCTTC	6 cut(s)	136, 376, 1723, 1882, 2621, 2768
HpyCH4III	ACNGT	8 cut(s)	56, 328, 698, 832, 858, 1671, 1866, 2329
HpyF3I	CTNAG	8 cut(s)	1184, 1367, 2286, 2478, 2529, 2561, 2676, 2708
Hsp92I	GRCGYC	2 cut(s)	432, 654
HspAI	GCGC	7 cut(s)	120, 196, 397, 791, 1838, 1840, 2005
Ksp22I	TGATCA	2 cut(s)	1249, 1294
KspI	CCGCGG	2 cut(s)	24, 181
LmnI	GCTCC	4 cut(s)	84, 180, 207, 2045
MaeI	CTAG	4 cut(s)	302, 2049, 2165, 2202
MaeIII	GTNAC	2 cut(s)	1818, 2384
MbiI	CCGCTC	1 cut(s)	532
MfeI	CAATTG	2 cut(s)	1734, 2379
MflI	RGATCY	3 cut(s)	880, 1985, 2461
MhlI	GDGCHC	2 cut(s)	228, 2630
MlsI	TGGCCA	2 cut(s)	2504, 2651
MluNI	TGGCCA	2 cut(s)	2504, 2651
MlyI	GAGTC	5 cut(s)	152, 194, 458, 794, 2489
MmeI	TCCRAC	5 cut(s)	975, 1095, 1336, 2471, 2618
Mox20I	TGGCCA	2 cut(s)	2504, 2651
Mph1103I	ATGCAT	1 cut(s)	2411
MroXI	GAANNNNTTC	3 cut(s)	969, 1892, 2036
MscI	TGGCCA	2 cut(s)	2504, 2651
MseI	TTAA	8 cut(s)	860, 1005, 1331, 1422, 1724, 2010, 2117, 2277
MslI	CAYNNNNRTG	2 cut(s)	374, 1350
Msp20I	TGGCCA	2 cut(s)	2504, 2651
MspA1I	CMGCKG	5 cut(s)	23, 180, 670, 808, 1601
MspI	CCGG	8 cut(s)	46, 258, 494, 512, 570, 730, 1146, 1633
MspR9I	CCNGG	9 cut(s)	258, 283, 317, 494, 512, 513, 1526, 1835, 2348
MunI	CAATTG	2 cut(s)	1734, 2379
Mva1269I	GAATGC	3 cut(s)	785, 1365, 2157
MvaI	CCWGG	5 cut(s)	283, 317, 1526, 1835, 2348
MvnI	CGCG	7 cut(s)	23, 153, 180, 693, 1840, 1842, 2005
NciI	CCSGG	4 cut(s)	258, 494, 512, 513
NcoI	CCATGG	1 cut(s)	375
NlaIV	GGNNCC	8 cut(s)	86, 136, 325, 525, 870, 882, 1686, 2463
NmeAIII	GCCGAG	3 cut(s)	213, 376, 390
NruI	TCGCGA	1 cut(s)	693
NsiI	ATGCAT	1 cut(s)	2411
NspI	RCATGY	4 cut(s)	1134, 1506, 2138, 2409
NspV	TTCGAA	1 cut(s)	749
PaeI	GCATGC	1 cut(s)	2409
PaeR7I	CTCGAG	2 cut(s)	873, 2466
PagI	TCATGA	2 cut(s)	741, 1150
PauI	GCGCGC	1 cut(s)	1838
PciI	ACATGT	1 cut(s)	1502
PcsI	WCGNNNNNNNCGW	3 cut(s)	354, 399, 411
PctI	GAATGC	3 cut(s)	785, 1365, 2157
PdmI	GAANNNNTTC	3 cut(s)	969, 1892, 2036
PfeI	GAWTC	8 cut(s)	454, 751, 986, 995, 1474, 2032, 2063, 2198
PflFI	GACNNNGTC	1 cut(s)	413
PflMI	CCANNNNNTGG	1 cut(s)	2381
PfoI	TCCNGGA	1 cut(s)	315
PinAI	ACCGGT	1 cut(s)	45
PleI	GAGTC	5 cut(s)	152, 193, 457, 793, 2488
PmaCI	CACGTG	1 cut(s)	91
PmlI	CACGTG	1 cut(s)	91
PpsI	GAGTC	5 cut(s)	152, 193, 457, 793, 2488
Ppu21I	YACGTR	3 cut(s)	91, 662, 1103
PpuMI	RGGWCCY	2 cut(s)	523, 869
PscI	ACATGT	1 cut(s)	1502
PshBI	ATTAAT	1 cut(s)	1422
Psp5II	RGGWCCY	2 cut(s)	523, 869
Psp6I	CCWGG	5 cut(s)	281, 315, 1524, 1833, 2346
PspCI	CACGTG	1 cut(s)	91
PspFI	CCCAGC	2 cut(s)	192, 2236
PspGI	CCWGG	5 cut(s)	281, 315, 1524, 1833, 2346
PspN4I	GGNNCC	8 cut(s)	86, 136, 325, 525, 870, 882, 1686, 2463
PspPI	GGNCC	7 cut(s)	134, 285, 496, 523, 665, 869, 2000
PspPPI	RGGWCCY	2 cut(s)	523, 869
PspXI	VCTCGAGB	1 cut(s)	873
PstI	CTGCAG	4 cut(s)	675, 1030, 2590, 2737
PstNI	CAGNNNCTG	1 cut(s)	1180
PsuI	RGATCY	3 cut(s)	880, 1985, 2461
PsyI	GACNNNGTC	1 cut(s)	413
PteI	GCGCGC	1 cut(s)	1838
PvuII	CAGCTG	1 cut(s)	808
RruI	TCGCGA	1 cut(s)	693
RsaI	GTAC	4 cut(s)	50, 893, 981, 1018
RsaNI	GTAC	4 cut(s)	49, 892, 980, 1017
RseI	CAYNNNNRTG	2 cut(s)	374, 1350
SacII	CCGCGG	2 cut(s)	24, 181
SalI	GTCGAC	1 cut(s)	407
SaqAI	TTAA	8 cut(s)	860, 1005, 1331, 1422, 1724, 2010, 2117, 2277
Sau96I	GGNCC	7 cut(s)	134, 285, 496, 523, 665, 869, 2000
SchI	GAGTC	5 cut(s)	152, 194, 458, 794, 2489
ScrFI	CCNGG	9 cut(s)	258, 283, 317, 494, 512, 513, 1526, 1835, 2348
SduI	GDGCHC	2 cut(s)	228, 2630
SfcI	CTRYAG	5 cut(s)	671, 1026, 2325, 2586, 2733
Sfr274I	CTCGAG	2 cut(s)	873, 2466
Sfr303I	CCGCGG	2 cut(s)	24, 181
SfuI	TTCGAA	1 cut(s)	749
SgrBI	CCGCGG	2 cut(s)	24, 181
SinI	GGWCC	6 cut(s)	285, 496, 523, 665, 869, 2000
SlaI	CTCGAG	2 cut(s)	873, 2466
SmaI	CCCGGG	1 cut(s)	513
SmiMI	CAYNNNNRTG	2 cut(s)	374, 1350
SmlI	CTYRAG	2 cut(s)	873, 2466
SmoI	CTYRAG	2 cut(s)	873, 2466
SphI	GCATGC	1 cut(s)	2409
SspMI	CTAG	4 cut(s)	302, 2049, 2165, 2202
StyD4I	CCNGG	9 cut(s)	256, 281, 315, 492, 510, 511, 1524, 1833, 2346
StyI	CCWWGG	6 cut(s)	375, 605, 1074, 1465, 2505, 2652
TaaI	ACNGT	8 cut(s)	56, 328, 698, 832, 858, 1671, 1866, 2329
TaqII	GACCGA	3 cut(s)	4, 302, 1400
TatI	WGTACW	1 cut(s)	1016
TauI	GCSGC	9 cut(s)	23, 105, 135, 183, 532, 556, 1345, 1632, 1646
TfiI	GAWTC	8 cut(s)	454, 751, 986, 995, 1474, 2032, 2063, 2198
Tru1I	TTAA	8 cut(s)	860, 1005, 1331, 1422, 1724, 2010, 2117, 2277
Tru9I	TTAA	8 cut(s)	860, 1005, 1331, 1422, 1724, 2010, 2117, 2277
TscAI	CASTG	5 cut(s)	707, 837, 1185, 1502, 2215
TspGWI	ACGGA	2 cut(s)	1465, 2474
TspMI	CCCGGG	1 cut(s)	511
TspRI	CASTG	5 cut(s)	707, 837, 1185, 1502, 2215
Tth111I	GACNNNGTC	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	2381
VpaK11BI	GGWCC	6 cut(s)	285, 496, 523, 665, 869, 2000
VspI	ATTAAT	1 cut(s)	1422
XagI	CCTNNNNNAGG	2 cut(s)	314, 1213
XapI	RAATTY	6 cut(s)	965, 1087, 1154, 1317, 1880, 2273
XbaI	TCTAGA	1 cut(s)	2164
XceI	RCATGY	4 cut(s)	1134, 1506, 2138, 2409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	958
XhoI	CTCGAG	2 cut(s)	873, 2466
XmaI	CCCGGG	1 cut(s)	511
XmiI	GTMKAC	3 cut(s)	69, 408, 560
XmnI	GAANNNNTTC	3 cut(s)	969, 1892, 2036
XspI	CTAG	4 cut(s)	302, 2049, 2165, 2202
ZraI	GACGTC	1 cut(s)	655
Zsp2I	ATGCAT	1 cut(s)	2411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.