Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015190

Physical Location & Seq

Genomic Coordinates Forward (+)

66610631 .. 66616294

Gene Structure 5664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020599

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2574 bp

ATGGCGAACGTCTCGGTCGCCGCGGAGTGGCAACTCCTCTACAACCGTTACTACCGTAAGCCCGAGGTCTACCGCATGACGTGGAGCCACGTGGACCTCAGCCGCAACAAGGTCGCCTGCGCCCCCTTCGGCGGTCCCATCGCCGTCATCCGCGATGACTCCAAGATCGTCCAGCTCCGCGGCGAGTCCGCCCAGCGCAAGCTCCGCATCTTCAATTCCTCGGGGCTCTTACTCGGCGAGACCATCTGGAAACACCCCGGCGGGCGGTTGATCGGCATGGCCTGGACCGATGACCAAACCCTAGTCTGCCTCGTCCAGGACGGCACCGTCTTCCGCTACAACATCCACGCCGAGATCGTCGAGCCGAGCATCTCCATGGGGAAGGAGTGCTTCGAGCGCAACGTCGTCGACTGCGTCTTCTGGGGGAACGGCGTCGTTTGCATCACCGAGTCGAATCAGCTCTTTTGCATATCCGATTTCCAGAACCCGAACCCGGTCCAGCTCGCCGACCCGGGGATCGAGGACCCGCCGCTCTGTATGGCCGTGATCGAGCCGCAGTACACTATGTCCGGCAACGTGGAGGTTCTGCTTGGGATTTCGGAGCCTTGGGTTTTGGCTGTGGAGGAAGACGGCGTGCAGCAGTTTGGGGTTGACGTCCTACGTGGACCGCTGCAGAAGATGGCGGTTTCTCGCGACGGTCAGTGGCTTGCTTCGTTCACTCATGACGGCCGGTTATTGGTCATGACTTCGAATCTCAATGAAATCCTGATTGAGCAGGAATGCGAGTCAGCGCTTCCTCCGGAACAGCTAGCGTGGTGTGGAATGGACACGGTGTTGCTGTATTGGGATGATATACTGTTAATGATGGGTCCTCGAGGGGATCCCGTGCGGTACTTTTATGACGAACCCGTTATTCTCATTCCCGAGTGTGATGGAGTGAGGATATTGTCCAACTCCAGTATGGAATTTCTTCAACGTGTACCTGATTCTACTGAATCCATCTTTAAGATTGGAAGTACATCGCCTGCAGCTTTGTTGTTCGATGCTTTGGATCATTTTGACAGACGAAGTGCTAAGGCAGATGAGAATTTGCGACTAATACGTGCATCCTTGTCGGAGGCTGTTGAAGCATGTATTGATGCTGCCGGTTATGAATTTGATCTCTCACGTCAACAGACACTGCTAAGAGCTGCAAGCTATGGTCAAGCGTTTTGCAGCAATTTTCAACGTGATCATATTCAAGAGATGTGTAAAACTTTGCGAGTATTAAATGCTGTGCGGCATCCTGATGTTGGAATGCCTCTTAGTATTCAACAATACAAGGTGCTTACACCATCTGTTCTGATCGGCCGTTTGATTAATTCCTACAAGCATCTTCTTGCACTACGGATATCAGAATACCTTGGAATGAATCAAGAAATGGTGATAATGCACTGGACATGTTCGAAGATAACAGCTTCCCTGGCAATTCCTGATGCTACTCTTCTTGAAATCTTAATTGATAAGTTGAAACTATGCAAAGGAATATCTTATGCAGCGGTTGCTGCTCATGCAGATAAGAATGGCCGCCGGAAGTTAGCCGCTATGCTTGTTGAACATGAACCGCGGTCCTCCAAACAGGTTCCTCTCTTGTTGAGCATAGGAGAAGAAGATACAGCTTTAACGAAGGCAATTGAAAGTGGTGATACAGACCTTGTTTATCTTGTTCTGTTTCATATCTGGCAAAAGAGAGAACCTTTGGCATTTTTCAAAATGTTACACCCGAAGCCCCTGGCGCGCGATTTGTTTGTGATTTATGCACGGTGCTATAAACATGAATTTTTGAAGGACTTCTTCCTATCAGCTGGACAACTTCAGGAGGTCGCTTTCCTTGTGTGGAAAGAATCTTGGGAACTCGGGAAAAATCCAATGGCAAGCAGAGGATCTCCCCTGCATGGTCCGCGCATTAAACTAATTGAGCAGGCCAAGAATCTCTTCGGAGGAGCTAGTAAGGATAAGGAATCCAATAGTCTCTTTGGAGAAACTAATAAGGATAAGGACTTTACCTTTGAATTAAAGGCTGCTGAAGAACATGCAAAATTGTTGAGAATGCAGCATGATCTAGAAGTGTCAACAAAGCAGGCTATTTTTGTTGATTCTAGTATCAGTGATACAATCCGAACTTGTATTGTGCTGGGAAATCATAAAGCAGCAATGAAAGTGAAAACTGAATTTAAGGTTTCTGAGAAGAGATGGTATTGGCTGAAAGTTTTTGCTCTGGCTACAGTCAGAGATTGGGATACCCTGGAGAAGTTTTCAAAAGAAAAGAGACCACCAATTGGTTACAGGCCATTTGTTGAGGCATGCATTGAAGCAGATGAAAGAGGGGAAGCTTTGAAATATATCCCAAAACTCACGGATCCTCGAGAAAGAGCTGAGTCTTATGGTCGGATTGGCATGGCCAAGGAAGCTGCTGATGCTGCCTCTCAGGCAAAGGATGGGGAATTGCTTGGTCGACTAAGATTGACGTTTTCACAAAATCCTGCAGCTTCATCAATTTTTGATACCCTTCGAGATCGATTGGGCGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005856 GO:0006810 GO:0006906 GO:0006996 GO:0007033 GO:0008092 GO:0008150 GO:0009705 GO:0009987 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030897 GO:0031090 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032889 GO:0032991 GO:0033043 GO:0033263 GO:0035542 GO:0042144 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044088 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045992 GO:0045995 GO:0046907 GO:0048284 GO:0048519 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051093 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051469 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097576 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0099023 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Vps16_C Vps16_N

Protein Analysis

858

Amino Acids

96.58

Weight (kDa)

5.93

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps16_N	PF04841	8 - 412	1e-84	Vps16, N-terminal region
Vps16_C	PF04840	509 - 836	1.4e-62	Vps16, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38020 AT2G38020
fragaria_vesca	FvH4_6g38590 FvH4_6g38590
malus_domestica	MD17G1136200.v1.1
prunus_persica	Prupe.3G176600_v2.0.a1 Prupe.3G176600_v2.0.a1
pyrus_communis	pycom17g12990
rosa_chinensis	RchiOBHm_Chr2g0152001
rosa_laevigata	RLG00000020599
rosa_multiflora	Rmu_sc0017048.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096060
rosa_rugosa	Rorug02G0430200 Rorug02G0430300
rosa_samantha	Rh2BG503200
rosa_wichuraiana	Rw2G040350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AatII	GACGTC	1 cut(s)	657
AbsI	CCTCGAGG	1 cut(s)	873
AccB1I	GGYRCC	1 cut(s)	323
AccB7I	CCANNNNNTGG	1 cut(s)	2318
AccBSI	CCGCTC	1 cut(s)	532
AccI	GTMKAC	3 cut(s)	69, 408, 2494
AccII	CGCG	8 cut(s)	23, 153, 180, 693, 1606, 1777, 1779, 1942
AccIII	TCCGGA	1 cut(s)	799
AclWI	GGATC	7 cut(s)	524, 875, 888, 1059, 1930, 2393, 2406
AcoI	YGGCCR	5 cut(s)	540, 727, 1348, 1564, 2439
AcsI	RAATTY	5 cut(s)	965, 1087, 1154, 1817, 2210
AcuI	CTGAAG	2 cut(s)	1838, 2085
AcvI	CACGTG	1 cut(s)	91
AcyI	GRCGYC	2 cut(s)	432, 654
AfaI	GTAC	4 cut(s)	560, 893, 981, 1018
AfeI	AGCGCT	1 cut(s)	792
AflIII	ACRYGT	2 cut(s)	976, 1439
AjiI	CACGTC	2 cut(s)	81, 1169
AjnI	CCWGG	5 cut(s)	281, 315, 1461, 1770, 2283
AjuI	GAANNNNNNNTTGG	2 cut(s)	1958, 1990
Alw26I	GTCTC	4 cut(s)	16, 233, 2015, 2302
AlwI	GGATC	7 cut(s)	524, 875, 888, 1059, 1930, 2393, 2406
AlwNI	CAGNNNCTG	1 cut(s)	1180
Ama87I	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1895, 2403
Aor13HI	TCCGGA	1 cut(s)	799
Aor51HI	AGCGCT	1 cut(s)	792
AoxI	GGCC	8 cut(s)	279, 540, 727, 1348, 1564, 1962, 2327, 2439
ApoI	RAATTY	5 cut(s)	965, 1087, 1154, 1817, 2210
ArsI	GACNNNNNNTTYG	2 cut(s)	2030, 2062
AseI	ATTAAT	1 cut(s)	1359
Asp700I	GAANNNNTTC	3 cut(s)	969, 1829, 1973
AspLEI	GCGC	7 cut(s)	122, 198, 399, 793, 1777, 1779, 1944
AspS9I	GGNCC	9 cut(s)	94, 134, 285, 496, 523, 665, 869, 1608, 1937
AsuC2I	CCSGG	4 cut(s)	258, 494, 512, 513
AsuHPI	GGTGA	3 cut(s)	436, 1435, 1694
AsuII	TTCGAA	2 cut(s)	749, 1445
AsuNHI	GCTAGC	1 cut(s)	808
AvaI	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1895, 2403
AvaII	GGWCC	9 cut(s)	94, 134, 285, 496, 523, 665, 869, 1608, 1937
BalI	TGGCCA	1 cut(s)	2441
BamHI	GGATCC	2 cut(s)	880, 2398
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	91
BbsI	GAAGAC	3 cut(s)	322, 409, 633
BbvCI	CCTCAGC	1 cut(s)	98
BccI	CCATC	9 cut(s)	146, 251, 673, 859, 926, 1007, 1342, 2226, 2471
BceAI	ACGGC	7 cut(s)	128, 337, 445, 527, 646, 742, 1335
BcgI	CGANNNNNNTGC	6 cut(s)	94, 128, 388, 422, 1095, 1129
BciT130I	CCWGG	5 cut(s)	283, 317, 1463, 1772, 2285
BciVI	GTATCC	1 cut(s)	2272
BclI	TGATCA	1 cut(s)	1231
BcnI	CCSGG	4 cut(s)	258, 494, 512, 513
BcoDI	GTCTC	4 cut(s)	16, 233, 2015, 2302
BfaI	CTAG	5 cut(s)	302, 809, 1986, 2102, 2139
BfmI	CTRYAG	4 cut(s)	671, 1026, 2262, 2523
BfoI	RGCGCY	1 cut(s)	794
BfuI	GTATCC	1 cut(s)	2272
BglI	GCCNNNNNGGC	1 cut(s)	2468
Bme1390I	CCNGG	9 cut(s)	258, 283, 317, 494, 512, 513, 1463, 1772, 2285
Bme18I	GGWCC	9 cut(s)	94, 134, 285, 496, 523, 665, 869, 1608, 1937
BmeT110I	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1895, 2403
BmgBI	CACGTC	2 cut(s)	81, 1169
BmgT120I	GGNCC	9 cut(s)	94, 134, 285, 496, 523, 665, 869, 1608, 1937
BmiI	GGNNCC	9 cut(s)	86, 136, 325, 525, 603, 870, 882, 1623, 2400
BmrFI	CCNGG	9 cut(s)	258, 283, 317, 494, 512, 513, 1463, 1772, 2285
BmtI	GCTAGC	1 cut(s)	812
BpiI	GAAGAC	3 cut(s)	322, 409, 633
BpmI	CTGGAG	2 cut(s)	940, 2306
Bpu10I	CCTNAGC	2 cut(s)	98, 1074
Bpu14I	TTCGAA	2 cut(s)	749, 1445
BpuMI	CCSGG	4 cut(s)	258, 494, 512, 513
Bsa29I	ATCGAT	1 cut(s)	2557
BsaAI	YACGTR	3 cut(s)	91, 662, 1103
BsaHI	GRCGYC	2 cut(s)	432, 654
BsaI	GGTCTC	2 cut(s)	233, 2302
BsaWI	WCCGGW	1 cut(s)	799
Bse118I	RCCGGY	2 cut(s)	729, 1145
Bse1I	ACTGG	2 cut(s)	957, 1439
Bse3DI	GCAATG	1 cut(s)	2199
BseAI	TCCGGA	1 cut(s)	799
BseBI	CCWGG	5 cut(s)	283, 317, 1463, 1772, 2285
BseCI	ATCGAT	1 cut(s)	2557
BseGI	GGATG	6 cut(s)	147, 342, 853, 1106, 1282, 2482
BseMI	GCAATG	1 cut(s)	2199
BseMII	CTCAG	4 cut(s)	112, 2214, 2406, 2480
BseNI	ACTGG	2 cut(s)	957, 1439
BsePI	GCGCGC	1 cut(s)	1775
BseRI	GAGGAG	2 cut(s)	26, 1995
BseX3I	CGGCCG	2 cut(s)	727, 1348
BseYI	CCCAGC	2 cut(s)	192, 2173
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	8 cut(s)	23, 153, 180, 693, 1606, 1777, 1779, 1942
Bsh1285I	CGRYCG	3 cut(s)	18, 730, 1351
BshFI	GGCC	8 cut(s)	281, 542, 729, 1350, 1566, 1964, 2329, 2441
BshNI	GGYRCC	1 cut(s)	323
BshVI	ATCGAT	1 cut(s)	2557
BsiEI	CGRYCG	3 cut(s)	18, 730, 1351
BsiHKCI	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1895, 2403
BsiSI	CCGG	8 cut(s)	258, 494, 512, 570, 730, 800, 1146, 1570
BslFI	GGGAC	1 cut(s)	120
BsmAI	GTCTC	4 cut(s)	16, 233, 2015, 2302
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	3 cut(s)	785, 1302, 2094
BsnI	GGCC	8 cut(s)	281, 542, 729, 1350, 1566, 1964, 2329, 2441
Bso31I	GGTCTC	2 cut(s)	233, 2302
BsoBI	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1895, 2403
Bsp119I	TTCGAA	2 cut(s)	749, 1445
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp13I	TCCGGA	1 cut(s)	799
Bsp19I	CCATGG	1 cut(s)	375
Bsp68I	TCGCGA	1 cut(s)	693
BspANI	GGCC	8 cut(s)	281, 542, 729, 1350, 1566, 1964, 2329, 2441
BspCNI	CTCAG	4 cut(s)	111, 2215, 2407, 2479
BspDI	ATCGAT	1 cut(s)	2557
BspEI	TCCGGA	1 cut(s)	799
BspFNI	CGCG	8 cut(s)	23, 153, 180, 693, 1606, 1777, 1779, 1942
BspHI	TCATGA	2 cut(s)	721, 741
BspLI	GGNNCC	9 cut(s)	86, 136, 325, 525, 603, 870, 882, 1623, 2400
BspMAI	CTGCAG	3 cut(s)	675, 1030, 2527
BspOI	GCTAGC	1 cut(s)	812
BspPI	GGATC	7 cut(s)	524, 875, 888, 1059, 1930, 2393, 2406
BspT104I	TTCGAA	2 cut(s)	749, 1445
BspT107I	GGYRCC	1 cut(s)	323
BspTNI	GGTCTC	2 cut(s)	233, 2302
BsrBI	CCGCTC	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	2199
BsrFI	RCCGGY	2 cut(s)	729, 1145
BsrI	ACTGG	2 cut(s)	957, 1439
BssAI	RCCGGY	2 cut(s)	729, 1145
BssHII	GCGCGC	1 cut(s)	1775
BssNI	GRCGYC	2 cut(s)	432, 654
BssT1I	CCWWGG	4 cut(s)	375, 605, 1402, 2442
Bst2UI	CCWGG	5 cut(s)	283, 317, 1463, 1772, 2285
Bst4CI	ACNGT	8 cut(s)	47, 56, 328, 698, 832, 858, 1803, 2266
Bst6I	CTCTTC	3 cut(s)	1488, 1979, 2222
BstACI	GRCGYC	2 cut(s)	432, 654
BstAPI	GCANNNNNTGC	1 cut(s)	1541
BstBAI	YACGTR	3 cut(s)	91, 662, 1103
BstBI	TTCGAA	2 cut(s)	749, 1445
BstDEI	CTNAG	8 cut(s)	98, 1074, 1184, 1304, 2223, 2415, 2466, 2498
BstDSI	CCRYGG	4 cut(s)	21, 178, 375, 1604
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	6 cut(s)	147, 342, 853, 1106, 1282, 2482
BstFNI	CGCG	8 cut(s)	23, 153, 180, 693, 1606, 1777, 1779, 1942
BstH2I	RGCGCY	1 cut(s)	794
BstHHI	GCGC	7 cut(s)	122, 198, 399, 793, 1777, 1779, 1944
BstMAI	GTCTC	4 cut(s)	16, 233, 2015, 2302
BstMCI	CGRYCG	3 cut(s)	18, 730, 1351
BstNI	CCWGG	5 cut(s)	283, 317, 1463, 1772, 2285
BstNSI	RCATGY	4 cut(s)	1134, 1443, 2075, 2346
BstSCI	CCNGG	9 cut(s)	256, 281, 315, 492, 510, 511, 1461, 1770, 2283
BstSFI	CTRYAG	4 cut(s)	671, 1026, 2262, 2523
BstUI	CGCG	8 cut(s)	23, 153, 180, 693, 1606, 1777, 1779, 1942
BstV2I	GAAGAC	3 cut(s)	322, 409, 633
BstX2I	RGATCY	3 cut(s)	880, 1922, 2398
BstYI	RGATCY	3 cut(s)	880, 1922, 2398
BstZI	CGGCCG	2 cut(s)	727, 1348
Bsu15I	ATCGAT	1 cut(s)	2557
BsuI	GTATCC	1 cut(s)	2272
BsuRI	GGCC	8 cut(s)	281, 542, 729, 1350, 1566, 1964, 2329, 2441
BsuTUI	ATCGAT	1 cut(s)	2557
BtgI	CCRYGG	4 cut(s)	21, 178, 375, 1604
BtgZI	GCGATG	3 cut(s)	124, 168, 1005
BtrI	CACGTC	2 cut(s)	81, 1169
BtsCI	GGATG	6 cut(s)	147, 342, 853, 1106, 1282, 2482
BtsI	GCAGTG	1 cut(s)	1178
BtsIMutI	CAGTG	4 cut(s)	707, 1178, 1432, 2152
BtuMI	TCGCGA	1 cut(s)	693
CaiI	CAGNNNCTG	1 cut(s)	1180
CciI	TCATGA	2 cut(s)	721, 741
CfoI	GCGC	7 cut(s)	122, 198, 399, 793, 1777, 1779, 1944
Cfr10I	RCCGGY	2 cut(s)	729, 1145
Cfr13I	GGNCC	9 cut(s)	94, 134, 285, 496, 523, 665, 869, 1608, 1937
Cfr42I	CCGCGG	3 cut(s)	24, 181, 1607
Cfr9I	CCCGGG	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	2557
CseI	GACGC	2 cut(s)	403, 421
Csp6I	GTAC	4 cut(s)	559, 892, 980, 1017
CviQI	GTAC	4 cut(s)	559, 892, 980, 1017
DdeI	CTNAG	8 cut(s)	98, 1074, 1184, 1304, 2223, 2415, 2466, 2498
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	5 cut(s)	540, 727, 1348, 1564, 2439
EagI	CGGCCG	2 cut(s)	727, 1348
Eam1104I	CTCTTC	3 cut(s)	1488, 1979, 2222
EarI	CTCTTC	3 cut(s)	1488, 1979, 2222
EciI	GGCGGA	1 cut(s)	178
EclXI	CGGCCG	2 cut(s)	727, 1348
Eco130I	CCWWGG	4 cut(s)	375, 605, 1402, 2442
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	2 cut(s)	233, 2302
Eco32I	GATATC	1 cut(s)	1392
Eco47I	GGWCC	9 cut(s)	94, 134, 285, 496, 523, 665, 869, 1608, 1937
Eco47III	AGCGCT	1 cut(s)	792
Eco52I	CGGCCG	2 cut(s)	727, 1348
Eco57I	CTGAAG	2 cut(s)	1838, 2085
Eco72I	CACGTG	1 cut(s)	91
Eco88I	CYCGRG	7 cut(s)	62, 220, 511, 873, 923, 1895, 2403
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO109I	RGGNCCY	2 cut(s)	523, 869
EcoRII	CCWGG	5 cut(s)	281, 315, 1461, 1770, 2283
EcoRV	GATATC	1 cut(s)	1392
EcoT14I	CCWWGG	4 cut(s)	375, 605, 1402, 2442
EcoT22I	ATGCAT	1 cut(s)	2348
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	4 cut(s)	375, 605, 1402, 2442
Esp3I	CGTCTC	1 cut(s)	16
FalI	AAGNNNNNCTT	6 cut(s)	374, 406, 1817, 1849, 1958, 1990
FaqI	GGGAC	1 cut(s)	120
FauI	CCCGC	2 cut(s)	254, 534
FbaI	TGATCA	1 cut(s)	1231
FblI	GTMKAC	3 cut(s)	69, 408, 2494
FokI	GGATG	6 cut(s)	134, 329, 860, 1093, 1269, 2489
FriOI	GRGCYC	1 cut(s)	228
FspBI	CTAG	5 cut(s)	302, 809, 1986, 2102, 2139
GlaI	GCGC	7 cut(s)	121, 197, 398, 792, 1776, 1778, 1943
GsaI	CCCAGC	2 cut(s)	196, 2177
GsuI	CTGGAG	2 cut(s)	940, 2306
HaeII	RGCGCY	1 cut(s)	794
HaeIII	GGCC	8 cut(s)	281, 542, 729, 1350, 1566, 1964, 2329, 2441
HapII	CCGG	8 cut(s)	258, 494, 512, 570, 730, 800, 1146, 1570
HgaI	GACGC	2 cut(s)	403, 421
HhaI	GCGC	7 cut(s)	122, 198, 399, 793, 1777, 1779, 1944
Hin1I	GRCGYC	2 cut(s)	432, 654
Hin6I	GCGC	7 cut(s)	120, 196, 397, 791, 1775, 1777, 1942
HinP1I	GCGC	7 cut(s)	120, 196, 397, 791, 1775, 1777, 1942
HincII	GTYRAC	5 cut(s)	409, 652, 1172, 2112, 2495
HindII	GTYRAC	5 cut(s)	409, 652, 1172, 2112, 2495
HindIII	AAGCTT	1 cut(s)	2370
HpaII	CCGG	8 cut(s)	258, 494, 512, 570, 730, 800, 1146, 1570
HphI	GGTGA	3 cut(s)	436, 1435, 1694
Hpy99I	CGWCG	5 cut(s)	362, 407, 410, 437, 698
HpyAV	CCTTC	5 cut(s)	136, 376, 1660, 1819, 2558
HpyCH4III	ACNGT	8 cut(s)	47, 56, 328, 698, 832, 858, 1803, 2266
HpyF3I	CTNAG	8 cut(s)	98, 1074, 1184, 1304, 2223, 2415, 2466, 2498
Hsp92I	GRCGYC	2 cut(s)	432, 654
HspAI	GCGC	7 cut(s)	120, 196, 397, 791, 1775, 1777, 1942
Kpn2I	TCCGGA	1 cut(s)	799
Ksp22I	TGATCA	1 cut(s)	1231
KspI	CCGCGG	3 cut(s)	24, 181, 1607
LmnI	GCTCC	5 cut(s)	84, 180, 207, 601, 1982
MaeI	CTAG	5 cut(s)	302, 809, 1986, 2102, 2139
MaeIII	GTNAC	3 cut(s)	47, 1755, 2321
MbiI	CCGCTC	1 cut(s)	532
MfeI	CAATTG	2 cut(s)	1671, 2316
MflI	RGATCY	3 cut(s)	880, 1922, 2398
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	2441
MluNI	TGGCCA	1 cut(s)	2441
MlyI	GAGTC	5 cut(s)	152, 194, 458, 794, 2426
MmeI	TCCRAC	4 cut(s)	975, 1095, 1273, 2408
Mox20I	TGGCCA	1 cut(s)	2441
Mph1103I	ATGCAT	1 cut(s)	2348
MroI	TCCGGA	1 cut(s)	799
MroXI	GAANNNNTTC	3 cut(s)	969, 1829, 1973
MscI	TGGCCA	1 cut(s)	2441
MseI	TTAA	9 cut(s)	860, 1005, 1268, 1359, 1496, 1661, 1947, 2054, 2214
MslI	CAYNNNNRTG	2 cut(s)	374, 1287
Msp20I	TGGCCA	1 cut(s)	2441
MspA1I	CMGCKG	6 cut(s)	23, 180, 670, 1538, 1606, 1844
MspI	CCGG	8 cut(s)	258, 494, 512, 570, 730, 800, 1146, 1570
MspR9I	CCNGG	9 cut(s)	258, 283, 317, 494, 512, 513, 1463, 1772, 2285
MunI	CAATTG	2 cut(s)	1671, 2316
Mva1269I	GAATGC	3 cut(s)	785, 1302, 2094
MvaI	CCWGG	5 cut(s)	283, 317, 1463, 1772, 2285
MvnI	CGCG	8 cut(s)	23, 153, 180, 693, 1606, 1777, 1779, 1942
NciI	CCSGG	4 cut(s)	258, 494, 512, 513
NcoI	CCATGG	1 cut(s)	375
NheI	GCTAGC	1 cut(s)	808
NlaIV	GGNNCC	9 cut(s)	86, 136, 325, 525, 603, 870, 882, 1623, 2400
NmeAIII	GCCGAG	3 cut(s)	213, 376, 390
NruI	TCGCGA	1 cut(s)	693
NsiI	ATGCAT	1 cut(s)	2348
NspI	RCATGY	4 cut(s)	1134, 1443, 2075, 2346
NspV	TTCGAA	2 cut(s)	749, 1445
PaeI	GCATGC	1 cut(s)	2346
PaeR7I	CTCGAG	2 cut(s)	873, 2403
PagI	TCATGA	2 cut(s)	721, 741
PauI	GCGCGC	1 cut(s)	1775
PciI	ACATGT	1 cut(s)	1439
PcsI	WCGNNNNNNNCGW	3 cut(s)	354, 399, 411
PctI	GAATGC	3 cut(s)	785, 1302, 2094
PdmI	GAANNNNTTC	3 cut(s)	969, 1829, 1973
PfeI	GAWTC	9 cut(s)	454, 751, 986, 995, 1411, 1883, 1969, 2000, 2135
PflFI	GACNNNGTC	1 cut(s)	413
PflMI	CCANNNNNTGG	1 cut(s)	2318
PfoI	TCCNGGA	1 cut(s)	315
PleI	GAGTC	5 cut(s)	152, 193, 457, 793, 2425
PmaCI	CACGTG	1 cut(s)	91
PmlI	CACGTG	1 cut(s)	91
PpsI	GAGTC	5 cut(s)	152, 193, 457, 793, 2425
Ppu21I	YACGTR	3 cut(s)	91, 662, 1103
PpuMI	RGGWCCY	2 cut(s)	523, 869
PscI	ACATGT	1 cut(s)	1439
PshBI	ATTAAT	1 cut(s)	1359
Psp5II	RGGWCCY	2 cut(s)	523, 869
Psp6I	CCWGG	5 cut(s)	281, 315, 1461, 1770, 2283
PspCI	CACGTG	1 cut(s)	91
PspFI	CCCAGC	2 cut(s)	192, 2173
PspGI	CCWGG	5 cut(s)	281, 315, 1461, 1770, 2283
PspN4I	GGNNCC	9 cut(s)	86, 136, 325, 525, 603, 870, 882, 1623, 2400
PspPI	GGNCC	9 cut(s)	94, 134, 285, 496, 523, 665, 869, 1608, 1937
PspPPI	RGGWCCY	2 cut(s)	523, 869
PspXI	VCTCGAGB	1 cut(s)	873
PstI	CTGCAG	3 cut(s)	675, 1030, 2527
PstNI	CAGNNNCTG	1 cut(s)	1180
PsuI	RGATCY	3 cut(s)	880, 1922, 2398
PsyI	GACNNNGTC	1 cut(s)	413
PteI	GCGCGC	1 cut(s)	1775
PvuII	CAGCTG	1 cut(s)	1844
RruI	TCGCGA	1 cut(s)	693
RsaI	GTAC	4 cut(s)	560, 893, 981, 1018
RsaNI	GTAC	4 cut(s)	559, 892, 980, 1017
RseI	CAYNNNNRTG	2 cut(s)	374, 1287
SacII	CCGCGG	3 cut(s)	24, 181, 1607
SalI	GTCGAC	2 cut(s)	407, 2493
SaqAI	TTAA	9 cut(s)	860, 1005, 1268, 1359, 1496, 1661, 1947, 2054, 2214
Sau96I	GGNCC	9 cut(s)	94, 134, 285, 496, 523, 665, 869, 1608, 1937
SchI	GAGTC	5 cut(s)	152, 194, 458, 794, 2426
ScrFI	CCNGG	9 cut(s)	258, 283, 317, 494, 512, 513, 1463, 1772, 2285
SduI	GDGCHC	1 cut(s)	228
SfcI	CTRYAG	4 cut(s)	671, 1026, 2262, 2523
Sfr274I	CTCGAG	2 cut(s)	873, 2403
Sfr303I	CCGCGG	3 cut(s)	24, 181, 1607
SfuI	TTCGAA	2 cut(s)	749, 1445
SgrBI	CCGCGG	3 cut(s)	24, 181, 1607
SinI	GGWCC	9 cut(s)	94, 134, 285, 496, 523, 665, 869, 1608, 1937
SlaI	CTCGAG	2 cut(s)	873, 2403
SmaI	CCCGGG	1 cut(s)	513
SmiMI	CAYNNNNRTG	2 cut(s)	374, 1287
SmlI	CTYRAG	2 cut(s)	873, 2403
SmoI	CTYRAG	2 cut(s)	873, 2403
SphI	GCATGC	1 cut(s)	2346
SspMI	CTAG	5 cut(s)	302, 809, 1986, 2102, 2139
StyD4I	CCNGG	9 cut(s)	256, 281, 315, 492, 510, 511, 1461, 1770, 2283
StyI	CCWWGG	4 cut(s)	375, 605, 1402, 2442
TaaI	ACNGT	8 cut(s)	47, 56, 328, 698, 832, 858, 1803, 2266
TaqII	GACCGA	2 cut(s)	4, 302
TatI	WGTACW	2 cut(s)	558, 1016
TauI	GCSGC	8 cut(s)	23, 105, 183, 532, 556, 1282, 1569, 1583
TfiI	GAWTC	9 cut(s)	454, 751, 986, 995, 1411, 1883, 1969, 2000, 2135
Tru1I	TTAA	9 cut(s)	860, 1005, 1268, 1359, 1496, 1661, 1947, 2054, 2214
Tru9I	TTAA	9 cut(s)	860, 1005, 1268, 1359, 1496, 1661, 1947, 2054, 2214
TscAI	CASTG	4 cut(s)	707, 1185, 1439, 2152
TspGWI	ACGGA	2 cut(s)	1402, 2411
TspMI	CCCGGG	1 cut(s)	511
TspRI	CASTG	4 cut(s)	707, 1185, 1439, 2152
Tth111I	GACNNNGTC	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	2318
VpaK11BI	GGWCC	9 cut(s)	94, 134, 285, 496, 523, 665, 869, 1608, 1937
VspI	ATTAAT	1 cut(s)	1359
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	5 cut(s)	965, 1087, 1154, 1817, 2210
XbaI	TCTAGA	1 cut(s)	2101
XceI	RCATGY	4 cut(s)	1134, 1443, 2075, 2346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	958
XhoI	CTCGAG	2 cut(s)	873, 2403
XmaI	CCCGGG	1 cut(s)	511
XmiI	GTMKAC	3 cut(s)	69, 408, 2494
XmnI	GAANNNNTTC	3 cut(s)	969, 1829, 1973
XspI	CTAG	5 cut(s)	302, 809, 1986, 2102, 2139
ZraI	GACGTC	1 cut(s)	655
Zsp2I	ATGCAT	1 cut(s)	2348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.