Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015190

Physical Location & Seq

Genomic Coordinates Forward (+)

55167307 .. 55167992

Gene Structure 686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0430300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAGAATTTGATGTGCTTAGCGGCAGTACTCATATTTTTCATTCAAACTGCAATTTTGCCAACCGAAGCAAATATCATTGCCCAAACATGTTCAAAAACACCAAACCCTCCGGTGTGTCTCTCGTCTCTCAAATCCCACCCTCGGAGCGCCCAAGCAGATATATATGGCTTAGCTGTCATAATGATCGATGTGGTAAAGGCAAAGTCCACAACGACTCTGAACCAAATCAACCAATTGCTTAAGCAAAGCCCAGGAGATAAAGCCTTGAGAGATTGTGCTGACAATTACAAAGGAGTTGTAGAAATTGATATCCCAGAGGCCTATCAGGCAATCAAGGCGGGGAGAGCTATGTTTGCATTGCAAAGCATGAATGACGCTGTGATTGAGGCCAATGAATGCGAACGCAACTTTGCACGCAGCAAATCTCATCCTCTGACAAAATTGAATAAAGATGCGGCAGATGTTGCTAGTGTGGCTGCAGCAATTATTGATGCATTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005856 GO:0006810 GO:0006906 GO:0006996 GO:0007033 GO:0008092 GO:0008150 GO:0009705 GO:0009987 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030897 GO:0031090 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032889 GO:0032991 GO:0033043 GO:0033263 GO:0035542 GO:0042144 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044088 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045992 GO:0045995 GO:0046907 GO:0048284 GO:0048519 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051093 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051469 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097576 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0099023 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Vps16_C Vps16_N

Protein Analysis

168

Amino Acids

18.09

Weight (kDa)

7.6

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	26 - 163	2.8e-21	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0015190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38020 AT2G38020
fragaria_vesca	FvH4_6g38590 FvH4_6g38590
malus_domestica	MD17G1136200.v1.1
prunus_persica	Prupe.3G176600_v2.0.a1 Prupe.3G176600_v2.0.a1
pyrus_communis	pycom17g12990
rosa_chinensis	RchiOBHm_Chr2g0152001
rosa_laevigata	RLG00000020599
rosa_multiflora	Rmu_sc0017048.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096060
rosa_rugosa	Rorug02G0430200 Rorug02G0430300
rosa_samantha	Rh2BG503200
rosa_wichuraiana	Rw2G040350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	23, 341, 458
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	47, 96, 448
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	176, 350
AluI	AGCT	2 cut(s)	176, 350
Alw26I	GTCTC	2 cut(s)	125, 132
AoxI	GGCC	2 cut(s)	321, 390
ApeKI	GCWGC	3 cut(s)	420, 479, 482
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	152
BbvI	GCAGC	3 cut(s)	432, 466, 494
BciT130I	CCWGG	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	125, 132
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	153
BfrI	CTTAAG	1 cut(s)	242
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	5 cut(s)	24, 421, 459, 480, 483
BlpI	GCTNAGC	2 cut(s)	19, 172
BlsI	GCNGC	5 cut(s)	25, 422, 460, 481, 484
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	445, 484
Bpu1102I	GCTNAGC	2 cut(s)	19, 172
BpuEI	CTTGAG	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	143, 253
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse3DI	GCAATG	2 cut(s)	78, 359
BseBI	CCWGG	1 cut(s)	255
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	143, 253
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	2 cut(s)	78, 359
BseXI	GCAGC	3 cut(s)	432, 466, 494
BshFI	GGCC	2 cut(s)	323, 392
BshVI	ATCGAT	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	125, 132
BsmBI	CGTCTC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	323, 392
Bsp143I	GATC	1 cut(s)	186
Bsp1720I	GCTNAGC	2 cut(s)	19, 172
BspACI	CCGC	3 cut(s)	23, 341, 458
BspANI	GGCC	2 cut(s)	323, 392
BspDI	ATCGAT	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	242
BsrDI	GCAATG	2 cut(s)	78, 359
BssECI	CCNNGG	2 cut(s)	143, 253
BssMI	GATC	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	19, 172
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	2 cut(s)	125, 132
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	6 cut(s)	329, 338, 347, 356, 467, 476
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	432, 466, 494
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	323, 392
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	418
CfoI	GCGC	1 cut(s)	152
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	2 cut(s)	90, 370
CviJI	RGCY	8 cut(s)	171, 176, 252, 266, 323, 350, 392, 479
CviKI_1	RGCY	8 cut(s)	171, 176, 252, 266, 323, 350, 392, 479
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	19, 172
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	313
EcoT22I	ATGCAT	1 cut(s)	499
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	2 cut(s)	93, 373
FaiI	YATR	8 cut(s)	35, 91, 164, 166, 168, 182, 353, 371
FatI	CATG	2 cut(s)	89, 369
FauI	CCCGC	1 cut(s)	334
Fnu4HI	GCNGC	5 cut(s)	24, 421, 459, 480, 483
FokI	GGATG	1 cut(s)	417
Fsp4HI	GCNGC	5 cut(s)	24, 421, 459, 480, 483
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	5 cut(s)	24, 421, 459, 480, 483
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	323, 392
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	386
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	93, 373
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	147, 222, 438
Hpy8I	GTNNAC	1 cut(s)	210
HpyCH4V	TGCA	6 cut(s)	53, 359, 364, 416, 482, 497
HpyF10VI	GCNNNNNNNGC	6 cut(s)	329, 338, 347, 356, 467, 476
HpyF3I	CTNAG	2 cut(s)	19, 172
Hsp92II	CATG	2 cut(s)	93, 373
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	5 cut(s)	126, 240, 267, 314, 330
Lsp1109I	GCAGC	3 cut(s)	432, 466, 494
LweI	GCATC	2 cut(s)	445, 484
MaeI	CTAG	1 cut(s)	471
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	236
MluCI	AATT	7 cut(s)	7, 54, 236, 286, 306, 443, 486
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	5 cut(s)	120, 153, 313, 382, 444
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	1 cut(s)	243
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	6 cut(s)	329, 338, 347, 356, 467, 476
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	93, 373
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	323
PciI	ACATGT	1 cut(s)	89
PctI	GAATGC	1 cut(s)	404
PkrI	GCNGC	5 cut(s)	25, 422, 460, 481, 484
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PscI	ACATGT	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	484
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	5 cut(s)	24, 421, 459, 480, 483
Sau3AI	GATC	1 cut(s)	186
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	2 cut(s)	178, 352
SfaNI	GCATC	2 cut(s)	445, 484
SfcI	CTRYAG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	242, 268
SmoI	CTYRAG	2 cut(s)	242, 268
Sse9I	AATT	7 cut(s)	7, 54, 236, 286, 306, 443, 486
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	3 cut(s)	23, 341, 458
SspMI	CTAG	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	253
TaqI	TCGA	1 cut(s)	189
TasI	AATT	7 cut(s)	7, 54, 236, 286, 306, 443, 486
TatI	WGTACW	1 cut(s)	28
TauI	GCSGC	2 cut(s)	26, 461
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	3 cut(s)	420, 479, 482
TspDTI	ATGAA	4 cut(s)	17, 31, 386, 411
Vha464I	CTTAAG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	1 cut(s)	471
ZrmI	AGTACT	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.