Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015190

Physical Location & Seq

Genomic Coordinates Forward (+)

55134967 .. 55135287

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0430200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCCTTACTGGAAGGGTTGAAATTAACAGAAACTTTGCATTATGAAAAGGCTATTTTTGAGTCGGATTGTTCGTTGTTGGTACAAGCAATTGGCAACCAAGTACCTGATATTTCTAGCTTGGGTATATTAGTGGAAGAGGTCAGGGACTTCCAACGTCGAAAACAGGACTTCAAGGTGTACTATGTACCTCGGGAAGTTAATACTTTAGCTCATAGGCTTGCCAAGTATGCTTCGACTTCGTTAGAGGGTCAAGCATGGTTTGTTATTGCTCCCGATTTCATAAGGGACGCCATTCTAAGTGATTGTAATCACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005856 GO:0006810 GO:0006906 GO:0006996 GO:0007033 GO:0008092 GO:0008150 GO:0009705 GO:0009987 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030897 GO:0031090 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0032889 GO:0032991 GO:0033043 GO:0033263 GO:0035542 GO:0042144 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044088 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045992 GO:0045995 GO:0046907 GO:0048284 GO:0048519 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051093 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051469 GO:0051641 GO:0051649 GO:0060627 GO:0061024 GO:0061025 GO:0065007 GO:0071840 GO:0090174 GO:0097576 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0099023 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Vps16_C Vps16_N

Protein Analysis

106

Amino Acids

12.13

Weight (kDa)

5.26

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	1 - 78	8e-14	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38020 AT2G38020
fragaria_vesca	FvH4_6g38590 FvH4_6g38590
malus_domestica	MD17G1136200.v1.1
prunus_persica	Prupe.3G176600_v2.0.a1 Prupe.3G176600_v2.0.a1
pyrus_communis	pycom17g12990
rosa_chinensis	RchiOBHm_Chr2g0152001
rosa_laevigata	RLG00000020599
rosa_multiflora	Rmu_sc0017048.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096060
rosa_rugosa	Rorug02G0430200 Rorug02G0430300
rosa_samantha	Rh2BG503200
rosa_wichuraiana	Rw2G040350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	4 cut(s)	84, 105, 182, 189
AgsI	TTSAA	2 cut(s)	22, 175
AluBI	AGCT	2 cut(s)	120, 212
AluI	AGCT	2 cut(s)	120, 212
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	1 cut(s)	3
AvaI	CYCGRG	1 cut(s)	192
BfaI	CTAG	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	191
BseJI	GATNNNNATC	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	161, 302
BsmFI	GGGAC	2 cut(s)	161, 302
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	192
BspANI	GGCC	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	191
BssNI	GRCGYC	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	222
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	4 cut(s)	83, 104, 181, 188
CviAII	CATG	1 cut(s)	258
CviJI	RGCY	5 cut(s)	5, 53, 120, 212, 220
CviKI_1	RGCY	5 cut(s)	5, 53, 120, 212, 220
CviQI	GTAC	4 cut(s)	83, 104, 181, 188
DdeI	CTNAG	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	192
FaeI	CATG	1 cut(s)	261
FaiI	YATR	7 cut(s)	45, 128, 186, 216, 231, 259, 284
FaqI	GGGAC	2 cut(s)	161, 302
FatI	CATG	1 cut(s)	257
FspBI	CTAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	261
HinfI	GANTC	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	194, 275
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	3 cut(s)	120, 130, 152
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	157
MboII	GAAGA	1 cut(s)	149
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	2 cut(s)	23, 90
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	45, 178
MnlI	CCTC	3 cut(s)	133, 201, 241
MseI	TTAA	2 cut(s)	26, 201
MunI	CAATTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	230
NlaIII	CATG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
RsaI	GTAC	4 cut(s)	84, 105, 182, 189
RsaNI	GTAC	4 cut(s)	83, 104, 181, 188
SaqAI	TTAA	2 cut(s)	26, 201
SchI	GAGTC	1 cut(s)	71
SetI	ASST	7 cut(s)	109, 122, 144, 160, 180, 193, 214
Sse9I	AATT	2 cut(s)	23, 90
SspMI	CTAG	1 cut(s)	117
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	160, 236
TasI	AATT	2 cut(s)	23, 90
TatI	WGTACW	1 cut(s)	180
Tru1I	TTAA	2 cut(s)	26, 201
Tru9I	TTAA	2 cut(s)	26, 201
TspDTI	ATGAA	2 cut(s)	60, 271
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.