Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013088

Physical Location & Seq

Genomic Coordinates Forward (+)

16018210 .. 16020156

Gene Structure 1947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGATGGACATCAGCATCATCACCTTCACCAGCTTCAATATCTCAACAAGCATCATCTTCATACTCAATCGCAAACGCCGGAAATAGCCTCTCCGGTAGCTGTTGGGGATAGGTTTCCACAGTGGAGCGTCGAAGAGACAAAAGAGTTGATAGGGATAAGAGGAGAGCTAGATCAAACTTTCATGGAGACAAAACGGAACAAGCTTCTTTGGGAAGTTATCTCTAACAAGATGAGAGACAAAAGCTTTCCTCGTAGCCCTGAACAGTGCAAGTGCAAGTGGAAGAACCTCGTCACTCGTTTTAAGGGATGTGAGACAATGGAGGCAGAGACAGCGAGACAACAGTTCCCTTTTTATGATGATATGCAAAATATATTTACCACTAGAATGCAGAGAATGCTATGGGCTGAATCCGAGGGAGGAGGAGGGGGAACAAGCGGGGCAGCGAGAAAGAGAGAGTATTCTTCAGATGAGGAAGAAGAGAATGTGAATGAAGAGCTAGTAGATGTCAGCAACGACCCAAAAATTCTAAATCCGAAAAAGAACATTGCAAAGAAGCGAAAAGGCGGTAGTAATAGTAGTAATAGCAATAATGGTGTAAGAGAAGTGTTGGAAGAGTTTATGAGACATCAAGTGAGAATGGAGAGCGAGTGGAGAGAAGGATGGGAGGCTAGGGAGAAGGAAAGAGCAGAGAAAGAAGAAGAATGGAGAAGGAAGATGGAGGAGCTTGAGAAGGAGAGGTTGGCAATGGAGCGGATGTGGCGGGATAGAGAGGAGCAACGGCGGTCGAGGGAGGAGATGAGAGCAGAGAAGAGGGATTCACTTATCAATGCATTGCTTGCTAAGCTTACTAGAGATGGTTCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

289

Amino Acids

34.31

Weight (kDa)

6.55

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	41 - 125	2.6e-23	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38250
fragaria_vesca	FvH4_6g11330 FvH4_6g11330
malus_domestica	MD04G1154600.v1.1 MD12G1168300.v1.1
prunus_persica	Prupe.6G278600_v2.0.a1
pyrus_communis	pycom04g13960 pycom12g15980
rosa_chinensis	RchiOBHm_Chr3g0462911
rosa_laevigata	RLG00000024825
rosa_multiflora	Rmu_sc0000766.1_g000017
rosa_roxburghii	Rroxscaffold_6G00417110
rosa_rugosa	Rorug03G0059700
rosa_samantha	Rh3AG118000 Rh3BG122900 Rh3CG124700 Rh3DG123400
rosa_wichuraiana	Rw3G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	754
AciI	CCGC	5 cut(s)	438, 567, 754, 763, 784
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	450
AgsI	TTSAA	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AluBI	AGCT	8 cut(s)	34, 101, 169, 205, 246, 499, 727, 847
AluI	AGCT	8 cut(s)	34, 101, 169, 205, 246, 499, 727, 847
Alw26I	GTCTC	7 cut(s)	131, 182, 231, 308, 323, 331, 619
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	525
AsuHPI	GGTGA	2 cut(s)	14, 20
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	3 cut(s)	657, 712, 851
BceAI	ACGGC	1 cut(s)	797
BcoDI	GTCTC	7 cut(s)	131, 182, 231, 308, 323, 331, 619
BfaI	CTAG	5 cut(s)	170, 384, 500, 672, 852
BisI	GCNGC	1 cut(s)	444
BlpI	GCTNAGC	1 cut(s)	843
BlsI	GCNGC	1 cut(s)	445
BmiI	GGNNCC	1 cut(s)	862
BmsI	GCATC	2 cut(s)	25, 61
Bpu1102I	GCTNAGC	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	749
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	4 cut(s)	635, 665, 743, 773
Bse3DI	GCAATG	3 cut(s)	546, 753, 833
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	4 cut(s)	10, 314, 668, 762
BseJI	GATNNNNATC	1 cut(s)	9
BseMI	GCAATG	3 cut(s)	546, 753, 833
BseRI	GAGGAG	6 cut(s)	177, 435, 438, 737, 788, 809
BseXI	GCAGC	1 cut(s)	455
Bsh1285I	CGRYCG	1 cut(s)	788
BsiEI	CGRYCG	1 cut(s)	788
BsiSI	CCGG	2 cut(s)	80, 95
BsmAI	GTCTC	7 cut(s)	131, 182, 231, 308, 323, 331, 619
BsmI	GAATGC	2 cut(s)	393, 402
Bsp143I	GATC	1 cut(s)	172
Bsp1720I	GCTNAGC	1 cut(s)	843
BspACI	CCGC	5 cut(s)	438, 567, 754, 763, 784
BspLI	GGNNCC	1 cut(s)	862
BspQI	GCTCTTC	1 cut(s)	489
BsrBI	CCGCTC	1 cut(s)	754
BsrDI	GCAATG	3 cut(s)	546, 753, 833
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	1 cut(s)	172
Bst4CI	ACNGT	3 cut(s)	123, 267, 345
Bst6I	CTCTTC	5 cut(s)	129, 474, 489, 609, 806
BstAPI	GCANNNNNTGC	2 cut(s)	397, 839
BstC8I	GCNNGC	1 cut(s)	840
BstDEI	CTNAG	1 cut(s)	843
BstF5I	GGATG	4 cut(s)	10, 314, 668, 762
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	7 cut(s)	131, 182, 231, 308, 323, 331, 619
BstMBI	GATC	1 cut(s)	172
BstMCI	CGRYCG	1 cut(s)	788
BstMWI	GCNNNNNNNGC	5 cut(s)	332, 397, 760, 839, 844
BstV1I	GCAGC	1 cut(s)	455
BtsCI	GGATG	4 cut(s)	10, 314, 668, 762
BtsIMutI	CAGTG	2 cut(s)	128, 272
Cac8I	GCNNGC	1 cut(s)	840
CseI	GACGC	1 cut(s)	118
CviAII	CATG	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	843
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	5 cut(s)	129, 474, 489, 609, 806
EarI	CTCTTC	5 cut(s)	129, 474, 489, 609, 806
Eco57I	CTGAAG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	835
FaeI	CATG	1 cut(s)	187
FaiI	YATR	7 cut(s)	63, 185, 357, 365, 374, 403, 623
FatI	CATG	1 cut(s)	183
FauI	CCCGC	2 cut(s)	431, 756
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	4 cut(s)	17, 321, 675, 769
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	5 cut(s)	170, 384, 500, 672, 852
GluI	GCNGC	1 cut(s)	444
HapII	CCGG	2 cut(s)	80, 95
HgaI	GACGC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	187
HindIII	AAGCTT	3 cut(s)	203, 244, 845
HinfI	GANTC	2 cut(s)	410, 818
HpaII	CCGG	2 cut(s)	80, 95
HphI	GGTGA	2 cut(s)	14, 20
Hpy188I	TCNGA	3 cut(s)	415, 469, 537
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	5 cut(s)	35, 653, 673, 705, 727
HpyCH4III	ACNGT	3 cut(s)	123, 267, 345
HpyCH4V	TGCA	6 cut(s)	270, 276, 367, 391, 551, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	332, 397, 760, 839, 844
HpyF3I	CTNAG	1 cut(s)	843
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	172
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	4 cut(s)	126, 724, 751, 775
LpnPI	CCDG	4 cut(s)	44, 93, 108, 273
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	2 cut(s)	25, 61
MaeI	CTAG	5 cut(s)	170, 384, 500, 672, 852
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	174
MbiI	CCGCTC	1 cut(s)	754
MboI	GATC	1 cut(s)	172
MluCI	AATT	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	591
Mph1103I	ATGCAT	1 cut(s)	835
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	386
MspI	CCGG	2 cut(s)	80, 95
Mva1269I	GAATGC	2 cut(s)	393, 402
MwoI	GCNNNNNNNGC	5 cut(s)	332, 397, 760, 839, 844
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	862
NmuCI	GTSAC	1 cut(s)	292
NsiI	ATGCAT	1 cut(s)	835
PciSI	GCTCTTC	1 cut(s)	489
PctI	GAATGC	2 cut(s)	393, 402
PfeI	GAWTC	2 cut(s)	410, 818
PkrI	GCNGC	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	862
RseI	CAYNNNNRTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	1 cut(s)	172
SfaNI	GCATC	2 cut(s)	25, 61
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
Sse9I	AATT	1 cut(s)	525
SsiI	CCGC	5 cut(s)	438, 567, 754, 763, 784
SspMI	CTAG	5 cut(s)	170, 384, 500, 672, 852
TaaI	ACNGT	3 cut(s)	123, 267, 345
TaqI	TCGA	2 cut(s)	132, 788
TasI	AATT	1 cut(s)	525
TfiI	GAWTC	2 cut(s)	410, 818
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	128, 272
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	50, 172, 507
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	2 cut(s)	128, 272
XapI	RAATTY	1 cut(s)	525
XspI	CTAG	5 cut(s)	170, 384, 500, 672, 852
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.