Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013088

Physical Location & Seq

Genomic Coordinates Reverse (-)

6743779 .. 6745590

Gene Structure 1812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11330.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGACGGTCATTATCCTCACCATCTTCATCATCAGCAGCAACAAGAGCTTCATCAGTTTCAGCTCCAACATCAGTTTCAGGTGGTTCAGCAACCACAACAGCTCCTTCCTCCTCCGCCGCATCAGCACCGGCATCTCAGTCCTCCTCCGATCACCGTCCACGTCGACGCCAGCGATAGGTTTCCCCAATGGAGTCTCCAGGAGACGAAGGAGCTAATAACGATCAGGGCGGAGCTGGATCAGACGTTCATGGAGACCAAACGAAACAAGCAGCTTTGGGAAGTGATAGCGACCCAGATGAAGGACAAGGGCCACAACCGCAGCGCCGAGCAGTGCAAGTGCAAATGGAAGAACCTCGTCACCCGCTACAAGGGTTGTGAGACTGCTGAGGCGGAGACCATGAGGCAGCAGTTCCCCTTCTTCAATGACCTGGCGACAATTATGGTTGCCAGAGAGCAGAGGCTGCCATGGACAGAAGCTGACGGCAATGGAGGTGCAAGCGGGTCGAAGAAGAAAGCAGCGGCTGTTGCGGTTTCCTCTGACGAAGATGACGAGGATCACGAGGACAGCGAGGAGGCTGGGGAGAAGGGAATCACCTCAGCGAGGAAGAAGAAGAAGGTAATGAAAACGGGCAACATTGGAAGCAGCAGCACTGGGATGGGTCTGGGTGGCAACAATGTGAAGGAGATATTGGAAGACTTCATGAGGCAACAGCTTCAGCTAGACATGCAATGGCGAGATGAGTTTCAGGCCAGGGAGAACGAGAGGCGGATGAGGGAGTACGAGTGGAGGCAGACAATGGAGGCTATTGAGAATGAGAGGCTGATGGCGGAGAGGGAATGGAGGGAGAGAGAAGAGCGAAGGAGGATGAGAGAGGAAGCTAGGGCTGAGAAGCGGGATGCTATCCTCACTGCTTTGCTAGACAGGCTTAATAGAGGGGGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

316

Amino Acids

36.96

Weight (kDa)

6.38

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	63 - 146	2e-21	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38250
fragaria_vesca	FvH4_6g11330 FvH4_6g11330
malus_domestica	MD04G1154600.v1.1 MD12G1168300.v1.1
prunus_persica	Prupe.6G278600_v2.0.a1
pyrus_communis	pycom04g13960 pycom12g15980
rosa_chinensis	RchiOBHm_Chr3g0462911
rosa_laevigata	RLG00000024825
rosa_multiflora	Rmu_sc0000766.1_g000017
rosa_roxburghii	Rroxscaffold_6G00417110
rosa_rugosa	Rorug03G0059700
rosa_samantha	Rh3AG118000 Rh3BG122900 Rh3CG124700 Rh3DG123400
rosa_wichuraiana	Rw3G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AclWI	GGATC	2 cut(s)	246, 564
AcuI	CTGAAG	1 cut(s)	701
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	4 cut(s)	177, 301, 370, 603
AgsI	TTSAA	1 cut(s)	424
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	3 cut(s)	198, 429, 752
AjuI	GAANNNNNNNTTGG	4 cut(s)	60, 92, 674, 706
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
Alw26I	GTCTC	5 cut(s)	197, 200, 248, 374, 389
AlwI	GGATC	2 cut(s)	246, 564
AlwNI	CAGNNNCTG	3 cut(s)	463, 479, 524
AoxI	GGCC	2 cut(s)	310, 750
ApeKI	GCWGC	8 cut(s)	37, 271, 321, 406, 463, 518, 645, 648
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	4 cut(s)	11, 145, 352, 586
BauI	CACGAG	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	702
BbvCI	CCTCAGC	2 cut(s)	387, 598
BbvI	GCAGC	8 cut(s)	49, 283, 333, 418, 450, 530, 657, 660
BccI	CCATC	3 cut(s)	30, 652, 820
BceAI	ACGGC	1 cut(s)	499
BcgI	CGANNNNNNTGC	2 cut(s)	486, 520
BciT130I	CCWGG	3 cut(s)	200, 431, 754
BcoDI	GTCTC	5 cut(s)	197, 200, 248, 374, 389
BfaI	CTAG	3 cut(s)	722, 882, 920
BfoI	RGCGCY	1 cut(s)	327
Bme1390I	CCNGG	3 cut(s)	200, 431, 754
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	310
BmrFI	CCNGG	3 cut(s)	200, 431, 754
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	3 cut(s)	130, 142, 889
BmuI	ACTGGG	1 cut(s)	663
BpiI	GAAGAC	1 cut(s)	702
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	2 cut(s)	387, 598
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	2 cut(s)	248, 389
BsaJI	CCNNGG	2 cut(s)	467, 753
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 770, 800
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 301, 370, 603
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	658
Bse3DI	GCAATG	2 cut(s)	493, 737
BseBI	CCWGG	3 cut(s)	200, 431, 754
BseDI	CCNNGG	2 cut(s)	467, 753
BseGI	GGATG	4 cut(s)	663, 777, 873, 904
BseLI	CCNNNNNNNGG	4 cut(s)	177, 301, 370, 603
BseMI	GCAATG	2 cut(s)	493, 737
BseMII	CTCAG	4 cut(s)	151, 378, 612, 879
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	3 cut(s)	102, 135, 587
BseXI	GCAGC	8 cut(s)	49, 283, 333, 418, 450, 530, 657, 660
BseYI	CCCAGC	1 cut(s)	578
BshFI	GGCC	2 cut(s)	312, 752
BsiSI	CCGG	1 cut(s)	130
BslI	CCNNNNNNNGG	4 cut(s)	177, 301, 370, 603
BsmAI	GTCTC	5 cut(s)	197, 200, 248, 374, 389
BsmBI	CGTCTC	1 cut(s)	197
BsnI	GGCC	2 cut(s)	312, 752
Bso31I	GGTCTC	2 cut(s)	248, 389
Bsp143I	GATC	4 cut(s)	150, 222, 238, 556
Bsp19I	CCATGG	1 cut(s)	467
BspANI	GGCC	2 cut(s)	312, 752
BspCNI	CTCAG	4 cut(s)	150, 379, 611, 880
BspHI	TCATGA	1 cut(s)	702
BspPI	GGATC	2 cut(s)	246, 564
BspQI	GCTCTTC	1 cut(s)	849
BspTNI	GGTCTC	2 cut(s)	248, 389
BsrDI	GCAATG	2 cut(s)	493, 737
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	658
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	467, 753
BssMI	GATC	4 cut(s)	150, 222, 238, 556
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	560
BssT1I	CCWWGG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	560
Bst2UI	CCWGG	3 cut(s)	200, 431, 754
Bst4CI	ACNGT	2 cut(s)	8, 157
Bst6I	CTCTTC	1 cut(s)	849
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	172, 499
BstDEI	CTNAG	4 cut(s)	137, 387, 598, 888
BstDSI	CCRYGG	1 cut(s)	467
BstENI	CCTNNNNNAGG	1 cut(s)	601
BstF5I	GGATG	4 cut(s)	663, 777, 873, 904
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	4 cut(s)	153, 225, 241, 559
BstMAI	GTCTC	5 cut(s)	197, 200, 248, 374, 389
BstMBI	GATC	4 cut(s)	150, 222, 238, 556
BstMWI	GCNNNNNNNGC	7 cut(s)	46, 124, 318, 463, 527, 727, 925
BstNI	CCWGG	3 cut(s)	200, 431, 754
BstNSI	RCATGY	2 cut(s)	730, 946
BstSCI	CCNGG	3 cut(s)	198, 429, 752
BstV1I	GCAGC	8 cut(s)	49, 283, 333, 418, 450, 530, 657, 660
BstV2I	GAAGAC	1 cut(s)	702
BsuRI	GGCC	2 cut(s)	312, 752
BtgI	CCRYGG	1 cut(s)	467
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	4 cut(s)	663, 777, 873, 904
BtsI	GCAGTG	2 cut(s)	338, 909
BtsIMutI	CAGTG	3 cut(s)	338, 651, 909
Cac8I	GCNNGC	2 cut(s)	172, 499
CaiI	CAGNNNCTG	3 cut(s)	463, 479, 524
CciI	TCATGA	1 cut(s)	702
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	310
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	6 cut(s)	250, 400, 468, 703, 727, 943
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	4 cut(s)	137, 387, 598, 888
DpnI	GATC	4 cut(s)	152, 224, 240, 558
DpnII	GATC	4 cut(s)	150, 222, 238, 556
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
EciI	GGCGGA	5 cut(s)	105, 245, 407, 784, 845
Eco130I	CCWWGG	1 cut(s)	467
Eco31I	GGTCTC	2 cut(s)	248, 389
Eco57I	CTGAAG	1 cut(s)	701
EcoNI	CCTNNNNNAGG	1 cut(s)	601
EcoRII	CCWGG	3 cut(s)	198, 429, 752
EcoT14I	CCWWGG	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	467
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	6 cut(s)	253, 403, 471, 706, 730, 946
FaiI	YATR	7 cut(s)	251, 401, 443, 469, 704, 728, 944
FatI	CATG	6 cut(s)	249, 399, 467, 702, 726, 942
FauI	CCCGC	3 cut(s)	371, 494, 888
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	4 cut(s)	670, 784, 880, 911
FspBI	CTAG	3 cut(s)	722, 882, 920
GlaI	GCGC	1 cut(s)	325
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	312, 752
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	253, 403, 471, 706, 730, 946
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	2 cut(s)	193, 591
HpaII	CCGG	1 cut(s)	130
HphI	GGTGA	4 cut(s)	11, 145, 352, 586
Hpy166II	GTNNAC	2 cut(s)	160, 166
Hpy188I	TCNGA	3 cut(s)	150, 243, 541
Hpy188III	TCNNGA	2 cut(s)	560, 703
Hpy8I	GTNNAC	2 cut(s)	160, 166
Hpy99I	CGWCG	2 cut(s)	167, 170
HpyAV	CCTTC	8 cut(s)	116, 202, 295, 427, 580, 610, 676, 855
HpyCH4III	ACNGT	2 cut(s)	8, 157
HpyCH4IV	ACGT	2 cut(s)	162, 245
HpyCH4V	TGCA	4 cut(s)	336, 342, 497, 730
HpyF10VI	GCNNNNNNNGC	7 cut(s)	46, 124, 318, 463, 527, 727, 925
HpyF3I	CTNAG	4 cut(s)	137, 387, 598, 888
HpySE526I	ACGT	2 cut(s)	162, 245
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	253, 403, 471, 706, 730, 946
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	150, 222, 238, 556
LguI	GCTCTTC	1 cut(s)	849
LmnI	GCTCC	4 cut(s)	69, 108, 211, 232
Lsp1109I	GCAGC	8 cut(s)	49, 283, 333, 418, 450, 530, 657, 660
LweI	GCATC	3 cut(s)	130, 142, 889
MaeI	CTAG	3 cut(s)	722, 882, 920
MaeII	ACGT	2 cut(s)	162, 245
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	4 cut(s)	152, 224, 240, 558
MboI	GATC	4 cut(s)	150, 222, 238, 556
MluCI	AATT	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	91
MseI	TTAA	1 cut(s)	930
MslI	CAYNNNNRTG	1 cut(s)	656
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	3 cut(s)	200, 431, 754
MvaI	CCWGG	3 cut(s)	200, 431, 754
MwoI	GCNNNNNNNGC	7 cut(s)	46, 124, 318, 463, 527, 727, 925
NcoI	CCATGG	1 cut(s)	467
NdeII	GATC	4 cut(s)	150, 222, 238, 556
NlaIII	CATG	6 cut(s)	253, 403, 471, 706, 730, 946
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	2 cut(s)	730, 946
PagI	TCATGA	1 cut(s)	702
PciSI	GCTCTTC	1 cut(s)	849
PcsI	WCGNNNNNNNCGW	4 cut(s)	171, 549, 558, 567
PfeI	GAWTC	1 cut(s)	591
PfoI	TCCNGGA	1 cut(s)	198
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Psp6I	CCWGG	3 cut(s)	198, 429, 752
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	3 cut(s)	198, 429, 752
PspPI	GGNCC	1 cut(s)	310
PstNI	CAGNNNCTG	3 cut(s)	463, 479, 524
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
RseI	CAYNNNNRTG	1 cut(s)	656
SalI	GTCGAC	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	849
SaqAI	TTAA	1 cut(s)	930
Sau3AI	GATC	4 cut(s)	150, 222, 238, 556
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	200, 431, 754
SfaNI	GCATC	3 cut(s)	130, 142, 889
SgrDI	CGTCGACG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	656
Sse9I	AATT	1 cut(s)	438
SspMI	CTAG	3 cut(s)	722, 882, 920
StyD4I	CCNGG	3 cut(s)	198, 429, 752
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	2 cut(s)	8, 157
TaiI	ACGT	2 cut(s)	165, 248
TaqI	TCGA	2 cut(s)	165, 506
TasI	AATT	1 cut(s)	438
TauI	GCSGC	2 cut(s)	121, 524
TfiI	GAWTC	1 cut(s)	591
Tru1I	TTAA	1 cut(s)	930
Tru9I	TTAA	1 cut(s)	930
TscAI	CASTG	3 cut(s)	338, 658, 916
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	8 cut(s)	37, 271, 321, 406, 463, 518, 645, 648
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	6 cut(s)	17, 41, 238, 314, 638, 691
TspRI	CASTG	3 cut(s)	338, 658, 916
XagI	CCTNNNNNAGG	1 cut(s)	601
XceI	RCATGY	2 cut(s)	730, 946
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	3 cut(s)	722, 882, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.