Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000766.1

Orthogroup ID

OG0013088

Physical Location & Seq

Genomic Coordinates Reverse (-)

95655 .. 96893

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000766.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atggagggtcattatcctcaccatcttcatcagcagcaacaacaagagcttcatcagtttcagctccaacatcagtttcaggtggttcagcaaccccaacaactccttcctcctccgccgcagcagcatctcagtcctcctcccatcaccgtccacgtggacgccagcgacaggttcccccaatggagtgtccaagagacgaaggagctgataacgatcagggcggggctggatcagacgttcatggagaccaaacgaaacaagcagctttgggaagtgattgcgacccagatgaaggacaagggccacaaccgcagcgccgagcagtgcaaatgtaaatggaagaacctcgtcacccgctacaagggttgtgagactgcggaggcggagaccatgaggcaacaattccccttcttcaatgacctggcaaccatcatggctgccagggagcagagaatggtgtggacagaagccgacagcattggaggtgcaagcgcgtcgaagaagaaagcagcggctgttacgctttcgtctgacgaggaggatgaggataacgaggacagcgaggaggctggggagaagggaatcaccgctgcaaggaagaagaagaaggtaatgaagaccggaaacattggaagcagcactgggatgggtctgggtggcaacaatgtgaaggagatattggaagatttcatgaggcaacagcttcagctggacatgcaatggcgagaggagtttcaggccagggagaacgagaggcggatgagggagtacgagtggaggcagacaatggaggctcttgagaatgagaggctgatgttggagagggaatggagggagagagaagagcaaaggaggatgagagaggaagctagggctgagaagagggatgctatcctcactgctttgctagacaggcttaatagggaggatatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

312

Amino Acids

36.71

Weight (kDa)

5.83

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38250
fragaria_vesca	FvH4_6g11330 FvH4_6g11330
malus_domestica	MD04G1154600.v1.1 MD12G1168300.v1.1
prunus_persica	Prupe.6G278600_v2.0.a1
pyrus_communis	pycom04g13960 pycom12g15980
rosa_chinensis	RchiOBHm_Chr3g0462911
rosa_laevigata	RLG00000024825
rosa_multiflora	Rmu_sc0000766.1_g000017
rosa_roxburghii	Rroxscaffold_6G00417110
rosa_rugosa	Rorug03G0059700
rosa_samantha	Rh3AG118000 Rh3BG122900 Rh3CG124700 Rh3DG123400
rosa_wichuraiana	Rw3G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	497
AclWI	GGATC	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	692
AcvI	CACGTG	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	4 cut(s)	171, 295, 364, 597
AgsI	TTSAA	1 cut(s)	418
AjnI	CCWGG	3 cut(s)	423, 443, 743
AjuI	GAANNNNNNNTTGG	6 cut(s)	60, 90, 92, 122, 665, 697
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	7 cut(s)	49, 64, 208, 268, 706, 712, 872
AluI	AGCT	7 cut(s)	49, 64, 208, 268, 706, 712, 872
Alw26I	GTCTC	4 cut(s)	191, 242, 368, 383
AlwI	GGATC	1 cut(s)	240
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	2 cut(s)	304, 741
ApeKI	GCWGC	9 cut(s)	34, 121, 124, 265, 315, 440, 512, 593, 639
AspLEI	GCGC	2 cut(s)	320, 497
AspS9I	GGNCC	1 cut(s)	304
AsuHPI	GGTGA	4 cut(s)	11, 139, 346, 580
BbrPI	CACGTG	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	626
BbvI	GCAGC	9 cut(s)	46, 133, 136, 277, 327, 427, 524, 580, 651
BccI	CCATC	4 cut(s)	30, 152, 440, 643
BcgI	CGANNNNNNTGC	2 cut(s)	480, 514
BciT130I	CCWGG	3 cut(s)	425, 445, 745
BcoDI	GTCTC	4 cut(s)	191, 242, 368, 383
BfaI	CTAG	2 cut(s)	873, 911
BfoI	RGCGCY	1 cut(s)	321
Bme1390I	CCNGG	3 cut(s)	425, 445, 745
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	3 cut(s)	425, 445, 745
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	2 cut(s)	136, 880
BmuI	ACTGGG	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	626
BpuEI	CTTGAG	1 cut(s)	821
BsaAI	YACGTR	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	2 cut(s)	242, 383
BsaJI	CCNNGG	2 cut(s)	444, 744
BsaWI	WCCGGW	1 cut(s)	623
BsaXI	ACNNNNNCTCC	3 cut(s)	761, 791, 920
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 295, 364, 597
Bse1I	ACTGG	1 cut(s)	649
Bse3DI	GCAATG	1 cut(s)	728
Bse8I	GATNNNNATC	1 cut(s)	215
BseBI	CCWGG	3 cut(s)	425, 445, 745
BseDI	CCNNGG	2 cut(s)	444, 744
BseGI	GGATG	5 cut(s)	550, 654, 768, 864, 895
BseJI	GATNNNNATC	1 cut(s)	215
BseLI	CCNNNNNNNGG	4 cut(s)	171, 295, 364, 597
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	2 cut(s)	145, 870
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	5 cut(s)	102, 129, 554, 581, 746
BseXI	GCAGC	9 cut(s)	46, 133, 136, 277, 327, 427, 524, 580, 651
BseYI	CCCAGC	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	306, 743
BsiSI	CCGG	1 cut(s)	624
BslI	CCNNNNNNNGG	4 cut(s)	171, 295, 364, 597
BsmAI	GTCTC	4 cut(s)	191, 242, 368, 383
BsmBI	CGTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	306, 743
Bso31I	GGTCTC	2 cut(s)	242, 383
Bsp143I	GATC	2 cut(s)	216, 232
BspANI	GGCC	2 cut(s)	306, 743
BspCNI	CTCAG	2 cut(s)	144, 871
BspFNI	CGCG	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	840
BspTNI	GGTCTC	2 cut(s)	242, 383
BsrDI	GCAATG	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	2 cut(s)	444, 744
BssMI	GATC	2 cut(s)	216, 232
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	3 cut(s)	425, 445, 745
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	2 cut(s)	840, 878
BstACI	GRCGYC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	166, 493
BstDEI	CTNAG	2 cut(s)	131, 879
BstF5I	GGATG	5 cut(s)	550, 654, 768, 864, 895
BstFNI	CGCG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	320, 497
BstKTI	GATC	2 cut(s)	219, 235
BstMAI	GTCTC	4 cut(s)	191, 242, 368, 383
BstMBI	GATC	2 cut(s)	216, 232
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 312, 718, 916
BstNI	CCWGG	3 cut(s)	425, 445, 745
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	3 cut(s)	423, 443, 743
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	9 cut(s)	46, 133, 136, 277, 327, 427, 524, 580, 651
BstV2I	GAAGAC	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	306, 743
BtsCI	GGATG	5 cut(s)	550, 654, 768, 864, 895
BtsI	GCAGTG	2 cut(s)	332, 900
BtsIMutI	CAGTG	3 cut(s)	332, 642, 900
Cac8I	GCNNGC	2 cut(s)	166, 493
CaiI	CAGNNNCTG	1 cut(s)	518
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	2 cut(s)	320, 497
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	2 cut(s)	170, 486
Csp6I	GTAC	1 cut(s)	772
CviAII	CATG	5 cut(s)	244, 394, 436, 694, 718
CviQI	GTAC	1 cut(s)	772
DdeI	CTNAG	2 cut(s)	131, 879
DpnI	GATC	2 cut(s)	218, 234
DpnII	GATC	2 cut(s)	216, 232
Eam1104I	CTCTTC	2 cut(s)	840, 878
EarI	CTCTTC	2 cut(s)	840, 878
EciI	GGCGGA	3 cut(s)	105, 401, 775
Eco31I	GGTCTC	2 cut(s)	242, 383
Eco57I	CTGAAG	1 cut(s)	692
Eco72I	CACGTG	1 cut(s)	157
EcoRII	CCWGG	3 cut(s)	423, 443, 743
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	5 cut(s)	247, 397, 439, 697, 721
FaiI	YATR	6 cut(s)	245, 395, 437, 695, 719, 935
FatI	CATG	5 cut(s)	243, 393, 435, 693, 717
FauI	CCCGC	2 cut(s)	217, 365
FokI	GGATG	5 cut(s)	557, 661, 775, 871, 902
FspBI	CTAG	2 cut(s)	873, 911
GlaI	GCGC	2 cut(s)	319, 496
GsaI	CCCAGC	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	306, 743
HapII	CCGG	1 cut(s)	624
HgaI	GACGC	2 cut(s)	170, 486
HhaI	GCGC	2 cut(s)	320, 497
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	5 cut(s)	247, 397, 439, 697, 721
Hin6I	GCGC	2 cut(s)	318, 495
HinP1I	GCGC	2 cut(s)	318, 495
HinfI	GANTC	1 cut(s)	585
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	4 cut(s)	11, 139, 346, 580
Hpy166II	GTNNAC	3 cut(s)	154, 160, 465
Hpy188I	TCNGA	2 cut(s)	237, 535
Hpy188III	TCNNGA	2 cut(s)	694, 800
Hpy8I	GTNNAC	3 cut(s)	154, 160, 465
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	7 cut(s)	116, 196, 289, 421, 574, 604, 667
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	2 cut(s)	156, 239
HpyCH4V	TGCA	4 cut(s)	330, 491, 596, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 312, 718, 916
HpyF3I	CTNAG	2 cut(s)	131, 879
HpySE526I	ACGT	2 cut(s)	156, 239
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	5 cut(s)	247, 397, 439, 697, 721
HspAI	GCGC	2 cut(s)	318, 495
Kzo9I	GATC	2 cut(s)	216, 232
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	3 cut(s)	69, 205, 448
Lsp1109I	GCAGC	9 cut(s)	46, 133, 136, 277, 327, 427, 524, 580, 651
LweI	GCATC	2 cut(s)	136, 880
MaeI	CTAG	2 cut(s)	873, 911
MaeII	ACGT	2 cut(s)	156, 239
MaeIII	GTNAC	2 cut(s)	352, 520
MalI	GATC	2 cut(s)	218, 234
MboI	GATC	2 cut(s)	216, 232
MluCI	AATT	1 cut(s)	404
MmeI	TCCRAC	2 cut(s)	91, 801
MseI	TTAA	1 cut(s)	921
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	3 cut(s)	515, 593, 712
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	3 cut(s)	425, 445, 745
MvaI	CCWGG	3 cut(s)	425, 445, 745
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	4 cut(s)	124, 312, 718, 916
NdeII	GATC	2 cut(s)	216, 232
NlaIII	CATG	5 cut(s)	247, 397, 439, 697, 721
NlaIV	GGNNCC	1 cut(s)	176
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	721
PagI	TCATGA	1 cut(s)	693
PciSI	GCTCTTC	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	585
PmaCI	CACGTG	1 cut(s)	157
PmlI	CACGTG	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	157
Psp6I	CCWGG	3 cut(s)	423, 443, 743
PspCI	CACGTG	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	3 cut(s)	423, 443, 743
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	304
PstNI	CAGNNNCTG	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	712
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
RseI	CAYNNNNRTG	1 cut(s)	647
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	1 cut(s)	921
Sau3AI	GATC	2 cut(s)	216, 232
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	3 cut(s)	425, 445, 745
SfaNI	GCATC	2 cut(s)	136, 880
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
Sse9I	AATT	1 cut(s)	404
SspMI	CTAG	2 cut(s)	873, 911
StyD4I	CCNGG	3 cut(s)	423, 443, 743
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	2 cut(s)	159, 242
TaqI	TCGA	1 cut(s)	500
TasI	AATT	1 cut(s)	404
TauI	GCSGC	2 cut(s)	121, 518
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	1 cut(s)	921
Tru9I	TTAA	1 cut(s)	921
TscAI	CASTG	3 cut(s)	332, 649, 907
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	9 cut(s)	34, 121, 124, 265, 315, 440, 512, 593, 639
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	6 cut(s)	17, 41, 232, 308, 632, 682
TspRI	CASTG	3 cut(s)	332, 649, 907
XceI	RCATGY	1 cut(s)	721
XspI	CTAG	2 cut(s)	873, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.