Rroxscaffold_6G00417110
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013088
Physical Location & Seq
Forward (+)
38940173 .. 38941679
1507 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00417110.1

Sequence Viewer

Length: 939 bp
ATGGACGGTCATTATCCTCACCATCTTCATCAGCAGCAACAACAAGAGCTTCATCAGTTTCAGCTCCAACATCAGTTTCAGGTGGTTCAGCAACCCCAACAGCTCCTTCCTCCTCCGCCGCAGCAGCATCTCAGTCCTCCTCCCATCACCGTCCACGTGGACGCCAGCGATAGGTTTCCCCAATGGAGTCTCCAAGAGACGAAGGAGTTGATAACGATCAGGGCGGGGCTGGATCAGACGTTCATGGAGACCAAACGAAACAAACAGCTTTGGGAAGTGATTGCGACCCAGATGAAGGACAAGGGCCACAACCGCAGCGCCGAGCAGTGCAAATGTAAATGGAAGAACCTCGTCACCCGCTACAAGGGTTGTGAGACTGCGGAGGCGGAGACCATGAGGCAGCAATTCCCCTTCTTCAATGACCTGGCAACCATCATGGCTGCCAGGGAGCAAAGAATGGTGTGGACAGAAGCCGACAGCATTGGAGGTGCAAGCGGGTCGAAGAAGAAAGCAGCAGCTGTTACGCTTTCGTCTGACGAGGAGGATGAGGATAACGAGGACAGCGAGGAGGCTGGGGAAAAGGGAATCACCGCGGCAAGGAAGAAGAAGAAGGTAATGAAGACGGGCAACATTGGAAGCAGCAGTGGGATGGGTCTGGGTGGCAACAATGTGAAGGAGATATTGGAAGATTTCATGAGGCAACAGCTTCAGCTGGACATGCAATGGCGAGAGGAGTTTCAGGCTAGGGAGAACGAGAGGCGGATGAGGGAGTACGAGTGGAGGCAGACGATGGAGGCTCTTGAGAATGAGAGGCTGATGTTGGAGAGGGAATGGAGGGAGAGAGAAGAGCAAAGGAGAATGAGAGAGGAAGCTAGGGCTGAGAAGAGGGATGCTATCCTCACTGCTTTGCTAGACAGGCTTAATAGGGGGGACGTGTAA

Protein Analysis

312

Amino Acids

36.57

Weight (kDa)

5.94

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 61 - 144 6.6e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38250
fragaria_vesca FvH4_6g11330 FvH4_6g11330
malus_domestica MD04G1154600.v1.1 MD12G1168300.v1.1
prunus_persica Prupe.6G278600_v2.0.a1
pyrus_communis pycom04g13960 pycom12g15980
rosa_chinensis RchiOBHm_Chr3g0462911
rosa_laevigata RLG00000024825
rosa_multiflora Rmu_sc0000766.1_g000017
rosa_roxburghii Rroxscaffold_6G00417110
rosa_rugosa Rorug03G0059700
rosa_samantha Rh3AG118000 Rh3BG122900 Rh3CG124700 Rh3DG123400
rosa_wichuraiana Rw3G010010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 593
AclWI GGATC 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 692
AcvI CACGTG 1 cut(s) 157
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 773
AfiI CCNNNNNNNGG 4 cut(s) 171, 295, 364, 597
AflIII ACRYGT 1 cut(s) 933
AgsI TTSAA 1 cut(s) 418
AjiI CACGTC 1 cut(s) 934
AjnI CCWGG 2 cut(s) 423, 443
AjuI GAANNNNNNNTTGG 6 cut(s) 60, 90, 92, 122, 665, 697
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 8 cut(s) 49, 64, 103, 268, 518, 706, 712, 872
AluI AGCT 8 cut(s) 49, 64, 103, 268, 518, 706, 712, 872
Alw26I GTCTC 5 cut(s) 191, 194, 242, 368, 383
AlwI GGATC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 9 cut(s) 34, 121, 124, 315, 400, 440, 512, 515, 639
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 4 cut(s) 11, 139, 346, 580
BbrPI CACGTG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 626
BbvI GCAGC 9 cut(s) 46, 133, 136, 327, 412, 427, 524, 527, 651
BccI CCATC 5 cut(s) 30, 152, 440, 643, 784
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BciT130I CCWGG 2 cut(s) 425, 445
BcoDI GTCTC 5 cut(s) 191, 194, 242, 368, 383
BfaI CTAG 3 cut(s) 744, 873, 911
BfoI RGCGCY 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 425, 445
BmgBI CACGTC 1 cut(s) 934
BmgT120I GGNCC 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 425, 445
BmsI GCATC 2 cut(s) 136, 880
BpiI GAAGAC 1 cut(s) 626
BpuEI CTTGAG 1 cut(s) 821
BsaAI YACGTR 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 2 cut(s) 242, 383
BsaJI CCNNGG 2 cut(s) 444, 591
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 295, 364, 597
Bse3DI GCAATG 1 cut(s) 728
Bse8I GATNNNNATC 1 cut(s) 215
BseBI CCWGG 2 cut(s) 425, 445
BseDI CCNNGG 2 cut(s) 444, 591
BseGI GGATG 4 cut(s) 550, 654, 768, 895
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 4 cut(s) 171, 295, 364, 597
BseMI GCAATG 1 cut(s) 728
BseMII CTCAG 2 cut(s) 145, 870
BseRI GAGGAG 5 cut(s) 102, 129, 554, 581, 746
BseXI GCAGC 9 cut(s) 46, 133, 136, 327, 412, 427, 524, 527, 651
BseYI CCCAGC 1 cut(s) 572
Bsh1236I CGCG 1 cut(s) 593
BshFI GGCC 1 cut(s) 306
BslI CCNNNNNNNGG 4 cut(s) 171, 295, 364, 597
BsmAI GTCTC 5 cut(s) 191, 194, 242, 368, 383
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 306
Bso31I GGTCTC 2 cut(s) 242, 383
Bsp143I GATC 2 cut(s) 216, 232
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 2 cut(s) 144, 871
BspFNI CGCG 1 cut(s) 593
BspHI TCATGA 1 cut(s) 693
BspPI GGATC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 840
BspTNI GGTCTC 2 cut(s) 242, 383
BsrDI GCAATG 1 cut(s) 728
BssECI CCNNGG 2 cut(s) 444, 591
BssMI GATC 2 cut(s) 216, 232
BssNI GRCGYC 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 425, 445
Bst4CI ACNGT 2 cut(s) 8, 151
Bst6I CTCTTC 2 cut(s) 840, 878
BstACI GRCGYC 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 166, 493
BstDEI CTNAG 2 cut(s) 131, 879
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 4 cut(s) 550, 654, 768, 895
BstFNI CGCG 1 cut(s) 593
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 2 cut(s) 219, 235
BstMAI GTCTC 5 cut(s) 191, 194, 242, 368, 383
BstMBI GATC 2 cut(s) 216, 232
BstMWI GCNNNNNNNGC 4 cut(s) 124, 312, 718, 916
BstNI CCWGG 2 cut(s) 425, 445
BstNSI RCATGY 1 cut(s) 721
BstSCI CCNGG 2 cut(s) 423, 443
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 9 cut(s) 46, 133, 136, 327, 412, 427, 524, 527, 651
BstV2I GAAGAC 1 cut(s) 626
BsuRI GGCC 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 591
BtrI CACGTC 1 cut(s) 934
BtsCI GGATG 4 cut(s) 550, 654, 768, 895
BtsI GCAGTG 3 cut(s) 332, 649, 900
BtsIMutI CAGTG 3 cut(s) 332, 649, 900
Cac8I GCNNGC 2 cut(s) 166, 493
CaiI CAGNNNCTG 1 cut(s) 518
CciI TCATGA 1 cut(s) 693
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 304
Cfr42I CCGCGG 1 cut(s) 594
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 772
CviAII CATG 5 cut(s) 244, 394, 436, 694, 718
CviQI GTAC 1 cut(s) 772
DdeI CTNAG 2 cut(s) 131, 879
DpnI GATC 2 cut(s) 218, 234
DpnII GATC 2 cut(s) 216, 232
Eam1104I CTCTTC 2 cut(s) 840, 878
EarI CTCTTC 2 cut(s) 840, 878
EciI GGCGGA 3 cut(s) 105, 401, 775
Eco31I GGTCTC 2 cut(s) 242, 383
Eco57I CTGAAG 1 cut(s) 692
Eco72I CACGTG 1 cut(s) 157
EcoRII CCWGG 2 cut(s) 423, 443
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 5 cut(s) 247, 397, 439, 697, 721
FaiI YATR 5 cut(s) 245, 395, 437, 695, 719
FatI CATG 5 cut(s) 243, 393, 435, 693, 717
FauI CCCGC 3 cut(s) 217, 365, 488
FokI GGATG 4 cut(s) 557, 661, 775, 902
FspBI CTAG 3 cut(s) 744, 873, 911
GlaI GCGC 1 cut(s) 319
GsaI CCCAGC 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 1 cut(s) 306
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 5 cut(s) 247, 397, 439, 697, 721
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HinfI GANTC 2 cut(s) 187, 585
HphI GGTGA 4 cut(s) 11, 139, 346, 580
Hpy166II GTNNAC 3 cut(s) 154, 160, 465
Hpy188I TCNGA 2 cut(s) 237, 535
Hpy188III TCNNGA 2 cut(s) 694, 800
Hpy8I GTNNAC 3 cut(s) 154, 160, 465
HpyAV CCTTC 6 cut(s) 116, 196, 289, 421, 604, 667
HpyCH4III ACNGT 2 cut(s) 8, 151
HpyCH4IV ACGT 3 cut(s) 156, 239, 933
HpyCH4V TGCA 3 cut(s) 330, 491, 721
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 312, 718, 916
HpyF3I CTNAG 2 cut(s) 131, 879
HpySE526I ACGT 3 cut(s) 156, 239, 933
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 5 cut(s) 247, 397, 439, 697, 721
HspAI GCGC 1 cut(s) 318
KspI CCGCGG 1 cut(s) 594
Kzo9I GATC 2 cut(s) 216, 232
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 3 cut(s) 69, 108, 448
Lsp1109I GCAGC 9 cut(s) 46, 133, 136, 327, 412, 427, 524, 527, 651
LweI GCATC 2 cut(s) 136, 880
MaeI CTAG 3 cut(s) 744, 873, 911
MaeII ACGT 3 cut(s) 156, 239, 933
MaeIII GTNAC 2 cut(s) 352, 520
MalI GATC 2 cut(s) 218, 234
MboI GATC 2 cut(s) 216, 232
MluCI AATT 1 cut(s) 404
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 2 cut(s) 91, 801
MseI TTAA 1 cut(s) 921
MspA1I CMGCKG 3 cut(s) 518, 593, 712
MspR9I CCNGG 2 cut(s) 425, 445
MvaI CCWGG 2 cut(s) 425, 445
MvnI CGCG 1 cut(s) 593
MwoI GCNNNNNNNGC 4 cut(s) 124, 312, 718, 916
NdeII GATC 2 cut(s) 216, 232
NlaIII CATG 5 cut(s) 247, 397, 439, 697, 721
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 721
PagI TCATGA 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 840
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PfeI GAWTC 1 cut(s) 585
PleI GAGTC 1 cut(s) 195
PmaCI CACGTG 1 cut(s) 157
PmlI CACGTG 1 cut(s) 157
PpsI GAGTC 1 cut(s) 195
Ppu21I YACGTR 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 423, 443
PspCI CACGTG 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 2 cut(s) 423, 443
PspPI GGNCC 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 518
PvuII CAGCTG 2 cut(s) 518, 712
RsaI GTAC 1 cut(s) 773
RsaNI GTAC 1 cut(s) 772
SacII CCGCGG 1 cut(s) 594
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 1 cut(s) 921
Sau3AI GATC 2 cut(s) 216, 232
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 425, 445
SfaNI GCATC 2 cut(s) 136, 880
Sfr303I CCGCGG 1 cut(s) 594
SgrBI CCGCGG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
Sse9I AATT 1 cut(s) 404
SspMI CTAG 3 cut(s) 744, 873, 911
StyD4I CCNGG 2 cut(s) 423, 443
TaaI ACNGT 2 cut(s) 8, 151
TaiI ACGT 3 cut(s) 159, 242, 936
TaqI TCGA 1 cut(s) 500
TasI AATT 1 cut(s) 404
TauI GCSGC 2 cut(s) 121, 596
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 1 cut(s) 921
Tru9I TTAA 1 cut(s) 921
TscAI CASTG 3 cut(s) 332, 649, 907
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 9 cut(s) 34, 121, 124, 315, 400, 440, 512, 515, 639
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 6 cut(s) 17, 41, 232, 308, 632, 682
TspRI CASTG 3 cut(s) 332, 649, 907
XceI RCATGY 1 cut(s) 721
XspI CTAG 3 cut(s) 744, 873, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.