Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013088

Physical Location & Seq

Genomic Coordinates Forward (+)

24278326 .. 24279926

Gene Structure 1601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1154600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAACATCATCCTCATCATTATCAACGTCATCAGCAGCAACACCATCAGCAGCTTCAGCTTCAACAACAGCAGCAGCAGCTTCAGCAGCAACATCTTAGTACTGTGACTGTACACGTGGACACGAGTGATAGGTTCCCTCAATGGAGCGTGCAGGAGACGAAGGACTTGCTTCTGATCAGAGCCGAGCTAGATCAGACTTTCATGGAGACGAAGAGAAACAAGCTTCTGTGGGAAGTGATTTCTACGAAGATGAAGGAAAAAGGTCACCATCGCAGCGCCGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACTCGTTACAAGGGTTTTGAGACAATGGAGCCGGAAGCTATGAGGCAGCAATTCCCGTTTTACAACGAGCTACAAGAGATTTTCGCTGCACGGATGCAGAGAATGCTGTGGGCAGAAGAAAGCGGAGCTGCAAGCGGGTCGAAGAAGAAAACGCTTTCTTCAGACGACGAGGAAGATAACGAGGATAGCGAGGCAGAGAATAAGGGAAGCACGGGGAAGAACAAGAAGAAGAAGATGAAGATGAGCAATATAGGAAGCAGCAGCGCAAGTGGAAATAATGTAAGGGAGTTATTGGAAGAGTTCATGAAGCAACAAATGCAAATGGAGATGCAATGGAGAGAGGAGTTTCAAGCGAGGGAGAATGAGAGGCGGTTGAAGGAGATGGAGTGGAGGCAGAAGATGGAAGCATTAGAGAACGAGAGGATAATGATGGAGACGAGATGGAGGGAGAGGGAGGAGCAAAGGAGGATGAGGGAGGAGGCTAGGGCTGAGAAAAGGGATGTTCTTATTACTGCTTTGCTAAACAAGCTTAGAAGAGAGGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

288

Amino Acids

34.78

Weight (kDa)

7.82

Isoelectric Point (pI)

65.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	48 - 132	9e-21	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38250
fragaria_vesca	FvH4_6g11330 FvH4_6g11330
malus_domestica	MD04G1154600.v1.1 MD12G1168300.v1.1
prunus_persica	Prupe.6G278600_v2.0.a1
pyrus_communis	pycom04g13960 pycom12g15980
rosa_chinensis	RchiOBHm_Chr3g0462911
rosa_laevigata	RLG00000024825
rosa_multiflora	Rmu_sc0000766.1_g000017
rosa_roxburghii	Rroxscaffold_6G00417110
rosa_rugosa	Rorug03G0059700
rosa_samantha	Rh3AG118000 Rh3BG122900 Rh3CG124700 Rh3DG123400
rosa_wichuraiana	Rw3G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	438, 450, 685
AcuI	CTGAAG	3 cut(s)	41, 68, 459
AcvI	CACGTG	1 cut(s)	118
AfaI	GTAC	2 cut(s)	103, 114
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	65, 665, 691
AluBI	AGCT	9 cut(s)	55, 61, 82, 190, 226, 353, 385, 443, 844
AluI	AGCT	9 cut(s)	55, 61, 82, 190, 226, 353, 385, 443, 844
Alw26I	GTCTC	4 cut(s)	152, 203, 329, 743
AspLEI	GCGC	2 cut(s)	281, 581
AsuHPI	GGTGA	1 cut(s)	260
BauI	CACGAG	1 cut(s)	124
BbrPI	CACGTG	1 cut(s)	118
BccI	CCATC	6 cut(s)	54, 279, 691, 709, 739, 750
BcgI	CGANNNNNNTGC	4 cut(s)	151, 185, 435, 469
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	4 cut(s)	152, 203, 329, 743
BfaI	CTAG	2 cut(s)	191, 798
BfoI	RGCGCY	1 cut(s)	282
BmcAI	AGTACT	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	137, 345
BmsI	GCATC	2 cut(s)	399, 633
BsaAI	YACGTR	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bse3DI	GCAATG	1 cut(s)	653
BseGI	GGATG	4 cut(s)	10, 414, 789, 820
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	1 cut(s)	795
BseRI	GAGGAG	3 cut(s)	671, 785, 806
BsgI	GTGCAG	2 cut(s)	173, 387
BsiSI	CCGG	1 cut(s)	347
BsmAI	GTCTC	4 cut(s)	152, 203, 329, 743
BsmBI	CGTCTC	3 cut(s)	152, 203, 743
BsmI	GAATGC	1 cut(s)	423
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	177, 193
BspACI	CCGC	3 cut(s)	438, 450, 685
BspCNI	CTCAG	1 cut(s)	796
BspHI	TCATGA	1 cut(s)	618
BspLI	GGNNCC	2 cut(s)	137, 345
BsrDI	GCAATG	1 cut(s)	653
BsrGI	TGTACA	1 cut(s)	112
BssMI	GATC	2 cut(s)	177, 193
BssSI	CACGAG	1 cut(s)	124
Bst2BI	CACGAG	1 cut(s)	124
Bst4CI	ACNGT	3 cut(s)	106, 112, 288
Bst6I	CTCTTC	3 cut(s)	209, 606, 844
BstAPI	GCANNNNNTGC	2 cut(s)	418, 631
BstAUI	TGTACA	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	152, 448
BstDEI	CTNAG	3 cut(s)	98, 804, 845
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	4 cut(s)	10, 414, 789, 820
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	2 cut(s)	281, 581
BstKTI	GATC	2 cut(s)	180, 196
BstMAI	GTCTC	4 cut(s)	152, 203, 329, 743
BstMBI	GATC	2 cut(s)	177, 193
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 79, 85, 88, 418, 631, 841
BstPI	GGTNACC	1 cut(s)	266
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	4 cut(s)	10, 414, 789, 820
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	152, 448
CciI	TCATGA	1 cut(s)	618
CfoI	GCGC	2 cut(s)	281, 581
Csp6I	GTAC	2 cut(s)	102, 113
CviAII	CATG	2 cut(s)	205, 619
CviQI	GTAC	2 cut(s)	102, 113
DdeI	CTNAG	3 cut(s)	98, 804, 845
DpnI	GATC	2 cut(s)	179, 195
DpnII	GATC	2 cut(s)	177, 193
Eam1104I	CTCTTC	3 cut(s)	209, 606, 844
EarI	CTCTTC	3 cut(s)	209, 606, 844
Eco57I	CTGAAG	3 cut(s)	41, 68, 459
Eco72I	CACGTG	1 cut(s)	118
Eco91I	GGTNACC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	266
Esp3I	CGTCTC	3 cut(s)	152, 203, 743
FaeI	CATG	2 cut(s)	208, 622
FaiI	YATR	5 cut(s)	206, 356, 566, 620, 860
FatI	CATG	2 cut(s)	204, 618
FauI	CCCGC	1 cut(s)	443
FbaI	TGATCA	1 cut(s)	177
FokI	GGATG	3 cut(s)	421, 796, 827
FspBI	CTAG	2 cut(s)	191, 798
GlaI	GCGC	2 cut(s)	280, 580
HaeII	RGCGCY	1 cut(s)	282
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	2 cut(s)	281, 581
Hin1II	CATG	2 cut(s)	208, 622
Hin6I	GCGC	2 cut(s)	279, 579
HinP1I	GCGC	2 cut(s)	279, 579
HindIII	AAGCTT	2 cut(s)	224, 842
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	2 cut(s)	115, 121
Hpy188I	TCNGA	4 cut(s)	177, 182, 198, 478
Hpy188III	TCNNGA	1 cut(s)	619
Hpy8I	GTNNAC	2 cut(s)	115, 121
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	3 cut(s)	157, 250, 685
HpyCH4III	ACNGT	3 cut(s)	106, 112, 288
HpyCH4IV	ACGT	2 cut(s)	28, 117
HpyCH4V	TGCA	8 cut(s)	154, 291, 297, 404, 412, 446, 634, 646
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 79, 85, 88, 418, 631, 841
HpyF3I	CTNAG	3 cut(s)	98, 804, 845
HpySE526I	ACGT	2 cut(s)	28, 117
Hsp92II	CATG	2 cut(s)	208, 622
HspAI	GCGC	2 cut(s)	279, 579
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	177, 193
LmnI	GCTCC	4 cut(s)	147, 343, 440, 772
LpnPI	CCDG	2 cut(s)	140, 360
LweI	GCATC	2 cut(s)	399, 633
MaeI	CTAG	2 cut(s)	191, 798
MaeII	ACGT	2 cut(s)	28, 117
MaeIII	GTNAC	4 cut(s)	106, 266, 313, 320
MalI	GATC	2 cut(s)	179, 195
MboI	GATC	2 cut(s)	177, 193
MluCI	AATT	1 cut(s)	365
MspI	CCGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	423
MwoI	GCNNNNNNNGC	7 cut(s)	58, 79, 85, 88, 418, 631, 841
NdeII	GATC	2 cut(s)	177, 193
NlaIII	CATG	2 cut(s)	208, 622
NlaIV	GGNNCC	2 cut(s)	137, 345
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	2 cut(s)	106, 266
PagI	TCATGA	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PctI	GAATGC	1 cut(s)	423
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	118
PspCI	CACGTG	1 cut(s)	118
PspEI	GGTNACC	1 cut(s)	266
PspN4I	GGNNCC	2 cut(s)	137, 345
RsaI	GTAC	2 cut(s)	103, 114
RsaNI	GTAC	2 cut(s)	102, 113
Sau3AI	GATC	2 cut(s)	177, 193
ScaI	AGTACT	1 cut(s)	103
SfaNI	GCATC	2 cut(s)	399, 633
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	3 cut(s)	438, 450, 685
SspMI	CTAG	2 cut(s)	191, 798
TaaI	ACNGT	3 cut(s)	106, 112, 288
TaiI	ACGT	2 cut(s)	31, 120
TaqI	TCGA	1 cut(s)	455
TasI	AATT	1 cut(s)	365
TatI	WGTACW	2 cut(s)	101, 112
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	2 cut(s)	106, 266
Tsp45I	GTSAC	2 cut(s)	106, 266
TspDTI	ATGAA	5 cut(s)	193, 269, 566, 607, 635
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	1 cut(s)	293
XspI	CTAG	2 cut(s)	191, 798
ZrmI	AGTACT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.