Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013088

Physical Location & Seq

Genomic Coordinates Forward (+)

16877604 .. 16878648

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGCGTTCAGGAGACGAAGGACTTGCTTCTGATCGATCGGAGCTAGATCAGACTTTCATGGAGACGAAGAGAAACAAGCTTCTGTGGGAAGTGATTTCTACGAAGATGAAGGAAAAAGGTCACCATCGCAGCGCCGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACTCGTTACAAGGGTTTTGAGACAATGGAGCCGGAAGCTATGAGGCAGCAATTCCCGTTTTACAACGAGCTACAAGAGATTTTCGCTGCACGGATGCAGAGAATGCTGTGGGCAGAAGAGAGTGGAGCTGCAAGCGGGTCGAAGAAGAAAACGCTTTCTTCAGACGACGAGGAAGATAACGAGGATAGCGAGGCAGAGAATAAGGGAAGCACGGGGAAGAACAAGAAGAAGAAGATGAAGATGAGCAATATAGGAAGCAGCAGCGCAAGCGGAAATAATGTAAGGGAGATATTGGAAGAGTTCATGAAGCAACAAATGCAAATGGAGATGCAATGGAGAGAGGAGTTTCAAGCGAGGGAGAATGAGAGGCGGTTGCAGGAGATGGAGTGGAGGCAGAAGATGGAAGCATTAGAGAACGAGAGGATAATGATGGAGACGAGATGGAGGGAGAGGGAGGAGCAAAGGAGGATGAGGGAGGAGGCTAGGGCTGAGAAAAGGGATGCTCTTATTACTGCTTTGCTAAACAAGCTTAGAAGAGAGGATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

240

Amino Acids

28.65

Weight (kDa)

6.33

Isoelectric Point (pI)

70.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38250
fragaria_vesca	FvH4_6g11330 FvH4_6g11330
malus_domestica	MD04G1154600.v1.1 MD12G1168300.v1.1
prunus_persica	Prupe.6G278600_v2.0.a1
pyrus_communis	pycom04g13960 pycom12g15980
rosa_chinensis	RchiOBHm_Chr3g0462911
rosa_laevigata	RLG00000024825
rosa_multiflora	Rmu_sc0000766.1_g000017
rosa_roxburghii	Rroxscaffold_6G00417110
rosa_rugosa	Rorug03G0059700
rosa_samantha	Rh3AG118000 Rh3BG122900 Rh3CG124700 Rh3DG123400
rosa_wichuraiana	Rw3G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	306, 441, 541
AcuI	CTGAAG	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	521
AluBI	AGCT	6 cut(s)	46, 82, 209, 241, 299, 700
AluI	AGCT	6 cut(s)	46, 82, 209, 241, 299, 700
Alw26I	GTCTC	4 cut(s)	9, 59, 185, 599
ApeKI	GCWGC	6 cut(s)	132, 217, 257, 299, 429, 432
AspLEI	GCGC	2 cut(s)	137, 437
AsuHPI	GGTGA	1 cut(s)	116
BbvI	GCAGC	6 cut(s)	144, 229, 244, 286, 441, 444
BccI	CCATC	5 cut(s)	135, 547, 565, 595, 606
BcgI	CGANNNNNNTGC	4 cut(s)	8, 42, 291, 325
BcoDI	GTCTC	4 cut(s)	9, 59, 185, 599
BfaI	CTAG	2 cut(s)	47, 654
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	6 cut(s)	133, 218, 258, 300, 430, 433
BlsI	GCNGC	6 cut(s)	134, 219, 259, 301, 431, 434
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	3 cut(s)	255, 489, 661
Bsa29I	ATCGAT	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bse3DI	GCAATG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	37
BseGI	GGATG	3 cut(s)	270, 645, 676
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	1 cut(s)	651
BseRI	GAGGAG	3 cut(s)	527, 641, 662
BseXI	GCAGC	6 cut(s)	144, 229, 244, 286, 441, 444
BsgI	GTGCAG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	41
BshVI	ATCGAT	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	203
BsmAI	GTCTC	4 cut(s)	9, 59, 185, 599
BsmBI	CGTCTC	3 cut(s)	9, 59, 599
BsmI	GAATGC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	34, 38, 49
BspACI	CCGC	3 cut(s)	306, 441, 541
BspCNI	CTCAG	1 cut(s)	652
BspDI	ATCGAT	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	509
BssMI	GATC	3 cut(s)	34, 38, 49
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	4 cut(s)	65, 282, 462, 700
BstAPI	GCANNNNNTGC	2 cut(s)	274, 487
BstC8I	GCNNGC	2 cut(s)	304, 439
BstDEI	CTNAG	2 cut(s)	660, 701
BstEII	GGTNACC	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	270, 645, 676
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	137, 437
BstKTI	GATC	3 cut(s)	37, 41, 52
BstMAI	GTCTC	4 cut(s)	9, 59, 185, 599
BstMBI	GATC	3 cut(s)	34, 38, 49
BstMCI	CGRYCG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	4 cut(s)	274, 438, 487, 697
BstPI	GGTNACC	1 cut(s)	122
BstV1I	GCAGC	6 cut(s)	144, 229, 244, 286, 441, 444
Bsu15I	ATCGAT	1 cut(s)	37
BsuTUI	ATCGAT	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	270, 645, 676
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	304, 439
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	2 cut(s)	137, 437
ClaI	ATCGAT	1 cut(s)	37
CviAII	CATG	2 cut(s)	61, 475
CviJI	RGCY	9 cut(s)	46, 82, 202, 209, 241, 299, 653, 659, 700
CviKI_1	RGCY	9 cut(s)	46, 82, 202, 209, 241, 299, 653, 659, 700
DdeI	CTNAG	2 cut(s)	660, 701
DpnI	GATC	3 cut(s)	36, 40, 51
DpnII	GATC	3 cut(s)	34, 38, 49
Eam1104I	CTCTTC	4 cut(s)	65, 282, 462, 700
EarI	CTCTTC	4 cut(s)	65, 282, 462, 700
Eco57I	CTGAAG	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	122
EcoO65I	GGTNACC	1 cut(s)	122
Esp3I	CGTCTC	3 cut(s)	9, 59, 599
FaeI	CATG	2 cut(s)	64, 478
FaiI	YATR	5 cut(s)	62, 212, 422, 476, 716
FatI	CATG	2 cut(s)	60, 474
FauI	CCCGC	1 cut(s)	299
Fnu4HI	GCNGC	6 cut(s)	133, 218, 258, 300, 430, 433
FokI	GGATG	3 cut(s)	277, 652, 683
Fsp4HI	GCNGC	6 cut(s)	133, 218, 258, 300, 430, 433
FspBI	CTAG	2 cut(s)	47, 654
GlaI	GCGC	2 cut(s)	136, 436
GluI	GCNGC	6 cut(s)	133, 218, 258, 300, 430, 433
HaeII	RGCGCY	1 cut(s)	138
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	2 cut(s)	137, 437
Hin1II	CATG	2 cut(s)	64, 478
Hin6I	GCGC	2 cut(s)	135, 435
HinP1I	GCGC	2 cut(s)	135, 435
HindIII	AAGCTT	2 cut(s)	80, 698
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	4 cut(s)	34, 43, 54, 334
Hpy188III	TCNNGA	2 cut(s)	12, 475
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	14, 106
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4V	TGCA	8 cut(s)	147, 153, 260, 268, 302, 490, 502, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	274, 438, 487, 697
HpyF3I	CTNAG	2 cut(s)	660, 701
Hsp92II	CATG	2 cut(s)	64, 478
HspAI	GCGC	2 cut(s)	135, 435
Kzo9I	GATC	3 cut(s)	34, 38, 49
LmnI	GCTCC	5 cut(s)	4, 43, 199, 296, 628
LpnPI	CCDG	2 cut(s)	216, 533
Lsp1109I	GCAGC	6 cut(s)	144, 229, 244, 286, 441, 444
LweI	GCATC	3 cut(s)	255, 489, 661
MaeI	CTAG	2 cut(s)	47, 654
MaeIII	GTNAC	3 cut(s)	122, 169, 176
MalI	GATC	3 cut(s)	36, 40, 51
MboI	GATC	3 cut(s)	34, 38, 49
MluCI	AATT	1 cut(s)	221
MspI	CCGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	274, 438, 487, 697
NdeII	GATC	3 cut(s)	34, 38, 49
NlaIII	CATG	2 cut(s)	64, 478
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	122
PagI	TCATGA	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PctI	GAATGC	1 cut(s)	279
PkrI	GCNGC	6 cut(s)	134, 219, 259, 301, 431, 434
Ple19I	CGATCG	1 cut(s)	41
PspEI	GGTNACC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	41
SatI	GCNGC	6 cut(s)	133, 218, 258, 300, 430, 433
Sau3AI	GATC	3 cut(s)	34, 38, 49
SetI	ASST	8 cut(s)	48, 84, 124, 168, 211, 243, 301, 702
SfaNI	GCATC	3 cut(s)	255, 489, 661
Sse9I	AATT	1 cut(s)	221
SsiI	CCGC	3 cut(s)	306, 441, 541
SspMI	CTAG	2 cut(s)	47, 654
TaaI	ACNGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	37, 311
TasI	AATT	1 cut(s)	221
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	6 cut(s)	132, 217, 257, 299, 429, 432
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	5 cut(s)	49, 125, 422, 463, 491
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	149
XspI	CTAG	2 cut(s)	47, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.