Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013088

Physical Location & Seq

Genomic Coordinates Forward (+)

26128615 .. 26131136

Gene Structure 2522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G278600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGGGACATCATCGTCATCATCACCAACAACAACAGCAACATCATCAACCACTTCAGCATCAAACTCATCAGGTTCATCTTCAACAACAACAACAACAACAACAGCAGCAGCAACAGCTTCAGCAGCAGCAGCTACAGCAGCCGCTTCCTAGTACTATCAGCGTCAACGTGGACGCGAGCGATAGGTTTCCTCAATGGAGCATTCAAGAGACGAAAGAGTTGCTGGTGATCAGAGCCGAGCTCGACCAGACTTTCATGGAGACGAAGAGAAACAAGCTTTTGTGGGAAGTGATTGCCACCAAGATGAAGGAAAAGGGCCACCATCGCAGCGCCGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGTTACAAGGGATGTGAGACGATGGAGCCGGAAGCTATGAGGCAGCAATTCCCATTTTACAATGAGCTGCAAGCGATTTTCGCAGCGAGGATGCAGAGAATGCTGTGGGCAGAAGAGAGCGGGGCTGCAAGCGGGTCGAAGAAGAAAGCGCTTTCTTCGGATGAGGAGGAAGATAATGAGGACAGCGAGGCCGAGAATAAGGCAAGCACGGTGAGGAAAAAGAAGAAGAAGGTGAAGATGAGCAATATTGGCATCAGCAGTACAAGTGGGAGTGGAAGCGGAAATAATGTGAGGGAGATATTGGAGGAGTTCATGAAGCAACAGATGCAAATGGAGATGCAATGGCGGGAGGAGTTTCAAGCGAGGGAGAACGAGAGGCGGTTGAAGGAGATGGAGTGGAGGCAGACCATGGAAGCTCTAGAGAACGAGAGGATAATGATGGAGAGGAGGTGGAGAGAGAGAGAAGAGCAAAGGAGGATGAGAGAGGAGGCTAGGGCTGAGAAGAGGGATGCTCTTATCACCGCTTTGCTAAACAAGCTTAGAAGAGAAGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

310

Amino Acids

37.11

Weight (kDa)

8.65

Isoelectric Point (pI)

69.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38250
fragaria_vesca	FvH4_6g11330 FvH4_6g11330
malus_domestica	MD04G1154600.v1.1 MD12G1168300.v1.1
prunus_persica	Prupe.6G278600_v2.0.a1
pyrus_communis	pycom04g13960 pycom12g15980
rosa_chinensis	RchiOBHm_Chr3g0462911
rosa_laevigata	RLG00000024825
rosa_multiflora	Rmu_sc0000766.1_g000017
rosa_roxburghii	Rroxscaffold_6G00417110
rosa_rugosa	Rorug03G0059700
rosa_samantha	Rh3AG118000 Rh3BG122900 Rh3CG124700 Rh3DG123400
rosa_wichuraiana	Rw3G010010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	15
AccBSI	CCGCTC	1 cut(s)	492
AccII	CGCG	1 cut(s)	179
AciI	CCGC	7 cut(s)	146, 492, 504, 651, 718, 751, 894
AcuI	CTGAAG	2 cut(s)	41, 107
AfaI	GTAC	2 cut(s)	157, 634
AfeI	AGCGCT	1 cut(s)	522
AfiI	CCNNNNNNNGG	1 cut(s)	379
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	4 cut(s)	86, 209, 731, 757
AluBI	AGCT	8 cut(s)	121, 136, 244, 280, 407, 439, 788, 910
AluI	AGCT	8 cut(s)	121, 136, 244, 280, 407, 439, 788, 910
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	3 cut(s)	206, 257, 383
Aor51HI	AGCGCT	1 cut(s)	522
AoxI	GGCC	2 cut(s)	319, 561
AspLEI	GCGC	2 cut(s)	335, 523
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	5 cut(s)	17, 241, 595, 616, 883
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	4 cut(s)	333, 388, 757, 805
BcgI	CGANNNNNNTGC	4 cut(s)	205, 239, 489, 523
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	3 cut(s)	206, 257, 383
BfaI	CTAG	3 cut(s)	153, 791, 864
BfmI	CTRYAG	1 cut(s)	137
BfoI	RGCGCY	2 cut(s)	336, 524
BmcAI	AGTACT	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	399
BmsI	GCATC	6 cut(s)	70, 453, 633, 687, 699, 871
BplI	GAGNNNNNCTC	4 cut(s)	228, 260, 868, 900
BsaJI	CCNNGG	1 cut(s)	780
BsaXI	ACNNNNNCTCC	4 cut(s)	752, 782, 806, 836
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	719
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	5 cut(s)	389, 468, 538, 855, 886
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	719
BseMII	CTCAG	1 cut(s)	861
BseRI	GAGGAG	5 cut(s)	551, 692, 737, 832, 872
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	321, 563
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	3 cut(s)	206, 257, 383
BsmBI	CGTCTC	3 cut(s)	206, 257, 383
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	2 cut(s)	204, 477
BsnI	GGCC	2 cut(s)	321, 563
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	7 cut(s)	146, 492, 504, 651, 718, 751, 894
BspANI	GGCC	2 cut(s)	321, 563
BspCNI	CTCAG	1 cut(s)	862
BspFNI	CGCG	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	399
BspQI	GCTCTTC	1 cut(s)	831
BsrBI	CCGCTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	719
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	780
Bst4CI	ACNGT	2 cut(s)	342, 583
Bst6I	CTCTTC	5 cut(s)	263, 480, 831, 869, 910
BstAPI	GCANNNNNTGC	2 cut(s)	472, 697
BstC8I	GCNNGC	4 cut(s)	181, 444, 502, 577
BstDEI	CTNAG	2 cut(s)	870, 911
BstDSI	CCRYGG	1 cut(s)	780
BstF5I	GGATG	5 cut(s)	389, 468, 538, 855, 886
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	2 cut(s)	336, 524
BstHHI	GCGC	2 cut(s)	335, 523
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	3 cut(s)	206, 257, 383
BstMBI	GATC	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	928
BstSFI	CTRYAG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	321, 563
BtgI	CCRYGG	1 cut(s)	780
BtgZI	GCGATG	1 cut(s)	311
BtsCI	GGATG	5 cut(s)	389, 468, 538, 855, 886
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	4 cut(s)	181, 444, 502, 577
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	2 cut(s)	335, 523
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	2 cut(s)	154, 185
Csp6I	GTAC	2 cut(s)	156, 633
CviAII	CATG	4 cut(s)	259, 685, 781, 925
CviQI	GTAC	2 cut(s)	156, 633
DdeI	CTNAG	2 cut(s)	870, 911
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
DrdI	GACNNNNNNGTC	1 cut(s)	15
DseDI	GACNNNNNNGTC	1 cut(s)	15
Eam1104I	CTCTTC	5 cut(s)	263, 480, 831, 869, 910
EarI	CTCTTC	5 cut(s)	263, 480, 831, 869, 910
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	780
Eco24I	GRGCYC	1 cut(s)	246
Eco47III	AGCGCT	1 cut(s)	522
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	41, 107
EcoICRI	GAGCTC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	780
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	780
Esp3I	CGTCTC	3 cut(s)	206, 257, 383
FaeI	CATG	4 cut(s)	262, 688, 784, 928
FaiI	YATR	5 cut(s)	260, 410, 686, 782, 926
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	4 cut(s)	258, 684, 780, 924
FauI	CCCGC	3 cut(s)	485, 497, 711
FbaI	TGATCA	1 cut(s)	231
FokI	GGATG	5 cut(s)	396, 475, 545, 862, 893
FriOI	GRGCYC	1 cut(s)	246
FspBI	CTAG	3 cut(s)	153, 791, 864
GlaI	GCGC	2 cut(s)	334, 522
HaeII	RGCGCY	2 cut(s)	336, 524
HaeIII	GGCC	2 cut(s)	321, 563
HapII	CCGG	1 cut(s)	401
HgaI	GACGC	2 cut(s)	154, 185
HhaI	GCGC	2 cut(s)	335, 523
Hin1II	CATG	4 cut(s)	262, 688, 784, 928
Hin6I	GCGC	2 cut(s)	333, 521
HinP1I	GCGC	2 cut(s)	333, 521
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	2 cut(s)	278, 908
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	5 cut(s)	17, 241, 595, 616, 883
Hpy166II	GTNNAC	2 cut(s)	169, 175
Hpy188I	TCNGA	2 cut(s)	236, 532
Hpy188III	TCNNGA	3 cut(s)	209, 685, 791
Hpy8I	GTNNAC	2 cut(s)	169, 175
HpyAV	CCTTC	3 cut(s)	304, 595, 751
HpyCH4III	ACNGT	2 cut(s)	342, 583
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	7 cut(s)	345, 351, 442, 466, 500, 700, 712
HpyF3I	CTNAG	2 cut(s)	870, 911
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	4 cut(s)	262, 688, 784, 928
HspAI	GCGC	2 cut(s)	333, 521
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	231
LguI	GCTCTTC	1 cut(s)	831
LmnI	GCTCC	2 cut(s)	201, 397
LpnPI	CCDG	4 cut(s)	59, 212, 263, 414
LweI	GCATC	6 cut(s)	70, 453, 633, 687, 699, 871
MaeI	CTAG	3 cut(s)	153, 791, 864
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	367, 374
MalI	GATC	1 cut(s)	233
MbiI	CCGCTC	1 cut(s)	492
MboI	GATC	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	1 cut(s)	401
Mva1269I	GAATGC	2 cut(s)	204, 477
MvnI	CGCG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	4 cut(s)	262, 688, 784, 928
NlaIV	GGNNCC	1 cut(s)	399
NmeAIII	GCCGAG	2 cut(s)	265, 589
NspI	RCATGY	1 cut(s)	928
PagI	TCATGA	1 cut(s)	684
PciI	ACATGT	1 cut(s)	924
PciSI	GCTCTTC	1 cut(s)	831
PctI	GAATGC	2 cut(s)	204, 477
PscI	ACATGT	1 cut(s)	924
Psp124BI	GAGCTC	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	319
RsaI	GTAC	2 cut(s)	157, 634
RsaNI	GTAC	2 cut(s)	156, 633
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	831
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	319
ScaI	AGTACT	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	6 cut(s)	70, 453, 633, 687, 699, 871
SfcI	CTRYAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	7 cut(s)	146, 492, 504, 651, 718, 751, 894
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	3 cut(s)	153, 791, 864
SstI	GAGCTC	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	2 cut(s)	342, 583
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	246, 509
TasI	AATT	1 cut(s)	419
TatI	WGTACW	2 cut(s)	155, 632
TauI	GCSGC	1 cut(s)	148
TscAI	CASTG	1 cut(s)	347
TspDTI	ATGAA	5 cut(s)	68, 247, 323, 673, 701
TspRI	CASTG	1 cut(s)	347
XbaI	TCTAGA	1 cut(s)	790
XceI	RCATGY	1 cut(s)	928
XspI	CTAG	3 cut(s)	153, 791, 864
ZrmI	AGTACT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.