AT2G38370

WEB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011829
Physical Location & Seq
Reverse (-)
16071979 .. 16074917
2939 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38370.1

Sequence Viewer

Length: 1569 bp
ATGGCCGAATTTCCAGAACCGGGCACTGTAAACCCTGACTCGGATCTATCGAATGGTCGAGCTGAGAAGCCTGAGATAGACACTTCGGCTCCGTTCGAGTCAGTGAGAGAAGCAGCCACTCGTTTCGGCGGTTTTGGTTTCTGGAGACCTTCTCTCAATAAACTCCCAGATGCTTCTCAGGAAAATATCCAAGAACCTGATATCATGGGACTCAAAGCACAAGCTTTCGAGCTACAAAGAGAACTAATTGTTAAAGAACGCGAAACGCTAGAGGTGTTGAAGGAGCTTGAGGCGACTAAAGCCACAGTCTTAAAGCTGCAGCAGAGGAATGAAGCTTATGAGGAGGACACGTTGAGAGAAGAAGTTGACAGTCATATCAAGCCAGCGGGTGTGGTTCTAAAGGATTTAAGCCAGGCGAAGATGAATTTGTGCAAGATTGCAAGTATACGCGAATCTGTGGAGCAGTTGAAGAATAAACTGAATGAGGAAAGAGCTGCACTTGAGAAGACACGCGAGAGACTTATGGAGAAATCTCTCAAGGTGTTTTCTTTAGAGGAAGAAGAAGTGAGAGTAAGATTTGCCAAGGAGGGTCAAACCGGCGAGAAAGATCTTGGAATGTTGAATGAGGTTCAAAGATTGAGCCGTCAAGCTCAAGAGGTGAAGAAAACCGGAGAGAATGCAGAGTTGGAAGTTGTGAAAGCAATGGCTGAGACTGAAAGCACAAGAGATAAGATTAGAACAGCTAAGATAAGGTTGGTGGCTGCTAGAAAGATGAAGGAAGCGGCCAGAGAGGCTGAGGCGGTTGCAATCGCAGAGATTGAGGCTGTTACTGGAAGTATGAATGTTGGTAAGGCCGAGGCTGTGACTATCTCTGCTGAAGAGTATTCTGTGCTTGCTCGTAGTGCTAGAGACGCAGAGGAAGAGGCGAGAAAGCGAGTGGAAGATGCAATGTCGAGAGTTGAAGAAGCTAATGTTTCAAAGAAGGATGTTCTGAAGAAAGTTGACGAAGCGGCTCAAGAAATTGAAACCAGCAAGAGAGTATTGGAGGAAGCTGTGGAGAGAGTTGACGCTGCAAATGCTTCGAAGATCGAAGCAGAAGAGGCGCTGCGAAAATGGCGGTCAGAGAATGGACAGAGGAGAAGATTATCTTCTTCGGTGAACAACACTTCCAAGTTCAAGAGCAGAAGAGAGACAACAACACGTCTGATGGATGTAAACGGTCTGCATCTGACATACGATGTTGTTGACGGGTCATCATCTTCTTCAACGGTCCCAGTCTTGAAACCAACAATGTCAATAGGACAAATACTGAGCAAGAAGCTACTTCTTGCAGAGGATTCAGATATGAATGTTGCTAATGAGAGAAGAAAAATGTCGTTGGGTCAGATGCTTGCAAAGAATAGCAGTAGTGATAAAACTGTAAGCAAGAGAAGTGAAGGGAAAGAGAATGAGAAAAGGACGAAGACTCGAAAGAGAAAGAGTTTCGGATTTGCTAAGATCTCTGTGTTGTTGAACAAAGAGAGCAAGAACAAGAAGAAGAAGAAAAAGATAGCTTTGAACTTAAGGTGA

Protein Analysis

522

Amino Acids

58.63

Weight (kDa)

9.08

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 25 - 116 3.8e-10 Weak chloroplast movement under blue light
WEMBL PF05701 118 - 379 7.5e-28 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38370 AT2G38370
fragaria_vesca FvH4_6g10230
malus_domestica MD04G1171400.v1.1 MD12G1184800.v1.1
prunus_persica Prupe.6G289900_v2.0.a1
pyrus_communis pycom04g15180 pycom12g17360
rosa_chinensis RchiOBHm_Chr3g0460971
rosa_laevigata RLG00000024962
rosa_multiflora Rmu_sc0006670.1_g000001
rosa_roxburghii Rroxscaffold_6G00418990
rosa_rugosa Rorug03G0047500
rosa_samantha Rh3AG104800 Rh3BG108600 Rh3CG110100 Rh3DG110300 Rh3DG110400
rosa_wichuraiana Rw3G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 445
AccII CGCG 3 cut(s) 261, 450, 513
AciI CCGC 6 cut(s) 129, 386, 782, 800, 1010, 1117
AclWI GGATC 1 cut(s) 51
AcoI YGGCCR 2 cut(s) 3, 783
AcsI RAATTY 2 cut(s) 8, 424
AcuI CTGAAG 2 cut(s) 897, 1013
AfiI CCNNNNNNNGG 2 cut(s) 20, 40
AflII CTTAAG 1 cut(s) 1561
AflIII ACRYGT 2 cut(s) 348, 1199
AjiI CACGTC 1 cut(s) 1202
AjnI CCWGG 1 cut(s) 411
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AloI GAACNNNNNNTCC 2 cut(s) 1151, 1183
Alw26I GTCTC 5 cut(s) 139, 511, 704, 903, 1184
AlwI GGATC 1 cut(s) 51
AoxI GGCC 3 cut(s) 3, 783, 852
ApeKI GCWGC 7 cut(s) 113, 316, 319, 494, 761, 1070, 1105
ApoI RAATTY 2 cut(s) 8, 424
AspLEI GCGC 1 cut(s) 1105
AspS9I GGNCC 1 cut(s) 1270
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 670, 1168
AsuII TTCGAA 1 cut(s) 1082
AvaII GGWCC 1 cut(s) 1270
BaeGI GKGCMC 1 cut(s) 26
BbsI GAAGAC 2 cut(s) 512, 1469
BbvCI CCTCAGC 1 cut(s) 795
BbvI GCAGC 7 cut(s) 125, 303, 331, 481, 748, 1057, 1092
BccI CCATC 1 cut(s) 1201
BceAI ACGGC 1 cut(s) 627
BcgI CGANNNNNNTGC 2 cut(s) 1062, 1096
BciT130I CCWGG 1 cut(s) 413
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 5 cut(s) 139, 511, 704, 903, 1184
BfaI CTAG 3 cut(s) 269, 765, 906
BfmI CTRYAG 1 cut(s) 317
BfoI RGCGCY 1 cut(s) 1106
BfrI CTTAAG 1 cut(s) 1561
BglI GCCNNNNNGGC 1 cut(s) 791
BglII AGATCT 2 cut(s) 607, 1497
BisI GCNGC 9 cut(s) 114, 317, 320, 495, 762, 783, 1011, 1071, 1106
BlsI GCNGC 9 cut(s) 115, 318, 321, 496, 763, 784, 1012, 1072, 1107
Bme1390I CCNGG 2 cut(s) 21, 413
Bme18I GGWCC 1 cut(s) 1270
BmgBI CACGTC 1 cut(s) 1202
BmgT120I GGNCC 1 cut(s) 1270
BmiI GGNNCC 2 cut(s) 90, 1272
BmrFI CCNGG 2 cut(s) 21, 413
BmrI ACTGGG 1 cut(s) 1268
BmsI GCATC 4 cut(s) 160, 934, 1234, 1377
BmuI ACTGGG 1 cut(s) 1268
BpiI GAAGAC 2 cut(s) 512, 1469
BplI GAGNNNNNCTC 2 cut(s) 136, 168
BpmI CTGGAG 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 795
Bpu14I TTCGAA 1 cut(s) 1082
BpuEI CTTGAG 5 cut(s) 308, 521, 521, 636, 999
BpuMI CCSGG 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 582, 855
BsaWI WCCGGW 1 cut(s) 668
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 335, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 40
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 2 cut(s) 835, 1274
Bse3DI GCAATG 2 cut(s) 708, 954
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 582, 855
BseGI GGATG 2 cut(s) 991, 1216
BseLI CCNNNNNNNGG 2 cut(s) 20, 40
BseMI GCAATG 2 cut(s) 708, 954
BseMII CTCAG 6 cut(s) 54, 63, 191, 699, 786, 1301
BseNI ACTGG 2 cut(s) 835, 1274
BseRI GAGGAG 2 cut(s) 356, 1150
BseSI GKGCMC 1 cut(s) 26
BseXI GCAGC 7 cut(s) 125, 303, 331, 481, 748, 1057, 1092
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 3 cut(s) 261, 450, 513
BshFI GGCC 3 cut(s) 5, 785, 854
BsiSI CCGG 3 cut(s) 20, 597, 669
BslFI GGGAC 2 cut(s) 222, 1256
BslI CCNNNNNNNGG 2 cut(s) 20, 40
BsmAI GTCTC 5 cut(s) 139, 511, 704, 903, 1184
BsmBI CGTCTC 1 cut(s) 903
BsmFI GGGAC 2 cut(s) 222, 1256
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 3 cut(s) 5, 785, 854
Bso31I GGTCTC 1 cut(s) 139
Bsp119I TTCGAA 1 cut(s) 1082
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 43, 607, 1086, 1497
BspACI CCGC 6 cut(s) 129, 386, 782, 800, 1010, 1117
BspANI GGCC 3 cut(s) 5, 785, 854
BspCNI CTCAG 6 cut(s) 55, 64, 190, 700, 787, 1302
BspFNI CGCG 3 cut(s) 261, 450, 513
BspLI GGNNCC 2 cut(s) 90, 1272
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 1082
BspTI CTTAAG 1 cut(s) 1561
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 708, 954
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 2 cut(s) 835, 1274
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 2 cut(s) 582, 855
BssMI GATC 4 cut(s) 43, 607, 1086, 1497
BssNAI GTATAC 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 582
Bst1107I GTATAC 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 6 cut(s) 28, 307, 371, 1220, 1270, 1420
Bst6I CTCTTC 4 cut(s) 873, 915, 1092, 1180
BstAFI CTTAAG 1 cut(s) 1561
BstBI TTCGAA 1 cut(s) 1082
BstC8I GCNNGC 3 cut(s) 384, 894, 1392
BstDEI CTNAG 8 cut(s) 63, 72, 177, 708, 744, 795, 1310, 1494
BstF5I GGATG 2 cut(s) 991, 1216
BstFNI CGCG 3 cut(s) 261, 450, 513
BstH2I RGCGCY 1 cut(s) 1106
BstHHI GCGC 1 cut(s) 1105
BstKTI GATC 4 cut(s) 46, 610, 1089, 1500
BstMAI GTCTC 5 cut(s) 139, 511, 704, 903, 1184
BstMBI GATC 4 cut(s) 43, 607, 1086, 1497
BstMWI GCNNNNNNNGC 7 cut(s) 299, 791, 902, 911, 1076, 1100, 1114
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 19, 411
BstSFI CTRYAG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 26
BstUI CGCG 3 cut(s) 261, 450, 513
BstV1I GCAGC 7 cut(s) 125, 303, 331, 481, 748, 1057, 1092
BstV2I GAAGAC 2 cut(s) 512, 1469
BstX2I RGATCY 3 cut(s) 43, 607, 1497
BstYI RGATCY 3 cut(s) 43, 607, 1497
BstZ17I GTATAC 1 cut(s) 446
BsuRI GGCC 3 cut(s) 5, 785, 854
BtrI CACGTC 1 cut(s) 1202
BtsCI GGATG 2 cut(s) 991, 1216
BtsIMutI CAGTG 2 cut(s) 24, 108
Cac8I GCNNGC 3 cut(s) 384, 894, 1392
CfoI GCGC 1 cut(s) 1105
Cfr10I RCCGGY 1 cut(s) 596
Cfr13I GGNCC 1 cut(s) 1270
CseI GACGC 2 cut(s) 920, 1076
CviAII CATG 1 cut(s) 205
DdeI CTNAG 8 cut(s) 63, 72, 177, 708, 744, 795, 1310, 1494
DpnI GATC 4 cut(s) 45, 609, 1088, 1499
DpnII GATC 4 cut(s) 43, 607, 1086, 1497
EaeI YGGCCR 2 cut(s) 3, 783
Eam1104I CTCTTC 4 cut(s) 873, 915, 1092, 1180
EarI CTCTTC 4 cut(s) 873, 915, 1092, 1180
Eco130I CCWWGG 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 139
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 1270
Eco57I CTGAAG 2 cut(s) 897, 1013
EcoRII CCWGG 1 cut(s) 411
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 582
Esp3I CGTCTC 1 cut(s) 903
FaeI CATG 1 cut(s) 208
FaiI YATR 8 cut(s) 206, 339, 375, 446, 524, 839, 1234, 1346
FalI AAGNNNNNCTT 2 cut(s) 1132, 1164
FaqI GGGAC 2 cut(s) 222, 1256
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 379
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 9 cut(s) 114, 317, 320, 495, 762, 783, 1011, 1071, 1106
FokI GGATG 2 cut(s) 998, 1223
Fsp4HI GCNGC 9 cut(s) 114, 317, 320, 495, 762, 783, 1011, 1071, 1106
FspBI CTAG 3 cut(s) 269, 765, 906
GlaI GCGC 1 cut(s) 1104
GluI GCNGC 9 cut(s) 114, 317, 320, 495, 762, 783, 1011, 1071, 1106
GsuI CTGGAG 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 1106
HaeIII GGCC 3 cut(s) 5, 785, 854
HapII CCGG 3 cut(s) 20, 597, 669
HgaI GACGC 2 cut(s) 920, 1076
HhaI GCGC 1 cut(s) 1105
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 1103
HinP1I GCGC 1 cut(s) 1103
HincII GTYRAC 4 cut(s) 367, 1003, 1066, 1246
HindII GTYRAC 4 cut(s) 367, 1003, 1066, 1246
HindIII AAGCTT 2 cut(s) 222, 333
HinfI GANTC 6 cut(s) 38, 98, 210, 452, 1337, 1465
HpaII CCGG 3 cut(s) 20, 597, 669
HphI GGTGA 2 cut(s) 670, 1168
Hpy166II GTNNAC 8 cut(s) 31, 367, 446, 1003, 1066, 1159, 1216, 1246
Hpy188I TCNGA 8 cut(s) 43, 993, 1123, 1206, 1230, 1342, 1386, 1487
Hpy188III TCNNGA 8 cut(s) 14, 142, 179, 653, 954, 1016, 1177, 1279
Hpy8I GTNNAC 8 cut(s) 31, 367, 446, 1003, 1066, 1159, 1216, 1246
HpyAV CCTTC 5 cut(s) 159, 274, 769, 976, 1430
HpyCH4III ACNGT 6 cut(s) 28, 307, 371, 1220, 1270, 1420
HpyCH4IV ACGT 2 cut(s) 350, 1201
HpyF10VI GCNNNNNNNGC 7 cut(s) 299, 791, 902, 911, 1076, 1100, 1114
HpyF3I CTNAG 8 cut(s) 63, 72, 177, 708, 744, 795, 1310, 1494
HpySE526I ACGT 2 cut(s) 350, 1201
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 1103
Kzo9I GATC 4 cut(s) 43, 607, 1086, 1497
LmnI GCTCC 3 cut(s) 94, 283, 460
Lsp1109I GCAGC 7 cut(s) 125, 303, 331, 481, 748, 1057, 1092
LweI GCATC 4 cut(s) 160, 934, 1234, 1377
MaeI CTAG 3 cut(s) 269, 765, 906
MaeII ACGT 2 cut(s) 350, 1201
MaeIII GTNAC 2 cut(s) 826, 862
MalI GATC 4 cut(s) 45, 609, 1088, 1499
MboI GATC 4 cut(s) 43, 607, 1086, 1497
MflI RGATCY 3 cut(s) 43, 607, 1497
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 4 cut(s) 8, 246, 424, 1020
MlyI GAGTC 4 cut(s) 32, 107, 204, 1459
MmeI TCCRAC 1 cut(s) 666
MseI TTAA 4 cut(s) 252, 311, 407, 1562
MspA1I CMGCKG 1 cut(s) 386
MspCI CTTAAG 1 cut(s) 1561
MspI CCGG 3 cut(s) 20, 597, 669
MspR9I CCNGG 2 cut(s) 21, 413
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 3 cut(s) 261, 450, 513
MwoI GCNNNNNNNGC 7 cut(s) 299, 791, 902, 911, 1076, 1100, 1114
NciI CCSGG 1 cut(s) 21
NdeII GATC 4 cut(s) 43, 607, 1086, 1497
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 90, 1272
NmeAIII GCCGAG 1 cut(s) 880
NmuCI GTSAC 1 cut(s) 862
NspV TTCGAA 1 cut(s) 1082
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PctI GAATGC 1 cut(s) 682
PfeI GAWTC 2 cut(s) 452, 1337
PkrI GCNGC 9 cut(s) 115, 318, 321, 496, 763, 784, 1012, 1072, 1107
PleI GAGTC 4 cut(s) 32, 106, 204, 1459
PpsI GAGTC 4 cut(s) 32, 106, 204, 1459
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 2 cut(s) 90, 1272
PspPI GGNCC 1 cut(s) 1270
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 3 cut(s) 43, 607, 1497
SaqAI TTAA 4 cut(s) 252, 311, 407, 1562
SatI GCNGC 9 cut(s) 114, 317, 320, 495, 762, 783, 1011, 1071, 1106
Sau3AI GATC 4 cut(s) 43, 607, 1086, 1497
Sau96I GGNCC 1 cut(s) 1270
SchI GAGTC 4 cut(s) 32, 107, 204, 1459
ScrFI CCNGG 2 cut(s) 21, 413
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 4 cut(s) 160, 934, 1234, 1377
SfcI CTRYAG 1 cut(s) 317
SfuI TTCGAA 1 cut(s) 1082
SinI GGWCC 1 cut(s) 1270
SmlI CTYRAG 6 cut(s) 287, 500, 536, 651, 1014, 1561
SmoI CTYRAG 6 cut(s) 287, 500, 536, 651, 1014, 1561
Sse9I AATT 4 cut(s) 8, 246, 424, 1020
SsiI CCGC 6 cut(s) 129, 386, 782, 800, 1010, 1117
SspMI CTAG 3 cut(s) 269, 765, 906
StyD4I CCNGG 2 cut(s) 19, 411
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 6 cut(s) 28, 307, 371, 1220, 1270, 1420
TaiI ACGT 2 cut(s) 353, 1204
TaqI TCGA 8 cut(s) 50, 58, 96, 228, 953, 1082, 1089, 1468
TasI AATT 4 cut(s) 8, 246, 424, 1020
TauI GCSGC 2 cut(s) 785, 1013
TfiI GAWTC 2 cut(s) 452, 1337
Tru1I TTAA 4 cut(s) 252, 311, 407, 1562
Tru9I TTAA 4 cut(s) 252, 311, 407, 1562
TscAI CASTG 2 cut(s) 31, 108
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 7 cut(s) 113, 316, 319, 494, 761, 1070, 1105
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 5 cut(s) 345, 437, 788, 854, 1361
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 2 cut(s) 31, 108
Vha464I CTTAAG 1 cut(s) 1561
VpaK11BI GGWCC 1 cut(s) 1270
XapI RAATTY 2 cut(s) 8, 424
XmiI GTMKAC 1 cut(s) 445
XspI CTAG 3 cut(s) 269, 765, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.