pycom12g17360

WEB family protein At2g38370-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0011829
Physical Location & Seq
Forward (+)
19723797 .. 19726373
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g17360.1

Sequence Viewer

Length: 1701 bp
ATGGAGACCGGAATCATCGGAGTGTCGGAGTCGGGTCTGGATGTGAGGAAAGAGGAGAGGGTTTTGAGGGCGGAGATCGATACCTCGGCCCCCTTTGAATCTGTGAAGGAAGCGGTGAGTCGATTCGGTGGAATCGGTTACTGGAAACCCTCTCAGCTTGCTAATAAGTCTTCTGAACCTCTGCAGCGTGACATCGAAGATGTTGACGCTGCAAAACTCGAGGAGCAGGCTTTAGAGTTGGAGAAAGATCTTACATTGAAAGAAAGGGAAACGCTGGATGTTCTAATCGAACTTGAAGAAACCAAAAAGACAATCGATGAGTTGAAAAAGAAGCTACAGAATGAAGTATCTGAAGTGAATGTGACCCTTGAGGCAAATGGAGGTAACGAATACGTGACTCCTCTGGTAAATGAAGAGGATAAGGAAAATCATGGGAATGGGTTTGGTCGTTACGATTCGATGGGCGGTGTGTGCCCCTGCCCTTCTTCAGCTCCAGGTTTAATCTTGATGGAGCTGAAACAGGCGAAAATGAACCTTACAAGGACTACTAGCGATCTTGCTGACATTCGAGCTTCTGTTGAATCATTGAACAAGAAATTGGAAAAAGAAAGAACCATGCTTGAGAAAACCCGTGTGAGGCTTACTTCAAATTCTTTGAAAGTGTTGTCTCTTGAAGAAGAGCTAAACCAAACAAAACTAAAGCTACAATTGGCAAAGGATGGTGAAACTAAGGGTGGTCCTGCTAATCCTTTAGATATTTCAAAGGAGCTTCAACGGCTGAGTTCTGAGACCGAGCAGTTCAAACGAATGGCAGAAGCTGCAAAGTTAGAGGTCTTGCGAGCAACGTCTGAGATTGAACAGACAGGAACTAAGATAAAAACAGCTGAAATCAGGTTGGTTGCTGCGAGAAAAATGAAAGAGGCAGCTAGAGCGGTAGAAGCAGTGACCCTAGCGGAGATTAAGGCTCTATCGTACCACAAGAGTTCATCTGGAGATTCATTTCAGAAACGCAACGAAGTAACTCTTTCATTCGAGGAGTACTCAGCATTAACCCGCAAAGTTCGAGATGCGGAGGAGCTTTCTAAGAATAGGGTGACAGATGCTATGCTTCATGTTGGAGAAGCAAATGTATCAAAAATGGAAATCTTGAAGAAGGTAGAGGAAGCAACCGAAGAAGTCAAAACCAGTAAAAAGGAACTGGAAGAAGCTCTGAACAGAGTGGAGGCTGCAAATAGGGGGAAACTAGCAGTTGAAGAAGCACTTCGCAAATGGAGATCCCATCACGGTCAAAGAAGACGTTCTTCTGTACACAACTCTACGAAGTTCAAAAATCCATGCCCATCTAATCACGGGAAAGATTTGAAATTACGGGATGTGAATGGTCTGAATCTTGTTAGTGACGGGGCAACGCCTGTGTTGAAGCCAACTTTGTCGATAGGACAAATACTAAGCAGGAAACTGCTTTTGCCGGAAGAGGTTGAAATGGAGGTGGCCGGAAAAATCCCTGTAAAACAGAAGGTGTCGCTGGGACAAATGCTGCAGAAACAAAATGGCGATCTACCCTCTTCTGGGAAGTCCGAGAGGGAAAGCAATCTCAAGGACTGTTCTGCTAAGAGAAAGAAGTCTGGATTTGCTCGATTCTCGCTACTCTTGACAAAGCAAAGCAGGAAAAAGAAGAAGCCAACTCCAAACTTGAAGTAA

Protein Analysis

567

Amino Acids

63.08

Weight (kDa)

8.98

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 24 - 114 6.4e-16 Weak chloroplast movement under blue light
WEMBL PF05701 170 - 431 1.2e-48 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38370 AT2G38370
fragaria_vesca FvH4_6g10230
malus_domestica MD04G1171400.v1.1 MD12G1184800.v1.1
prunus_persica Prupe.6G289900_v2.0.a1
pyrus_communis pycom04g15180 pycom12g17360
rosa_chinensis RchiOBHm_Chr3g0460971
rosa_laevigata RLG00000024962
rosa_multiflora Rmu_sc0006670.1_g000001
rosa_roxburghii Rroxscaffold_6G00418990
rosa_rugosa Rorug03G0047500
rosa_samantha Rh3AG104800 Rh3BG108600 Rh3CG110100 Rh3DG110300 Rh3DG110400
rosa_wichuraiana Rw3G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 932
AciI CCGC 7 cut(s) 71, 113, 465, 932, 953, 1054, 1070
AclWI GGATC 1 cut(s) 1269
AcoI YGGCCR 1 cut(s) 1491
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 2 cut(s) 372, 471
AfaI GTAC 3 cut(s) 974, 1040, 1308
AfiI CCNNNNNNNGG 3 cut(s) 636, 1568, 1569
AjnI CCWGG 1 cut(s) 493
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
Alw26I GTCTC 2 cut(s) 672, 782
AlwI GGATC 1 cut(s) 1269
AlwNI CAGNNNCTG 1 cut(s) 818
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 2 cut(s) 87, 1491
ApeKI GCWGC 7 cut(s) 184, 209, 818, 902, 923, 1226, 1537
ApoI RAATTY 1 cut(s) 649
Asp700I GAANNNNTTC 2 cut(s) 1260, 1297
AspS9I GGNCC 2 cut(s) 88, 737
AsuHPI GGTGA 3 cut(s) 127, 734, 1105
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 737
BaeGI GKGCMC 1 cut(s) 476
BbsI GAAGAC 2 cut(s) 162, 1300
BbvI GCAGC 7 cut(s) 196, 196, 805, 889, 935, 1213, 1524
BccI CCATC 5 cut(s) 454, 502, 713, 1287, 1348
BceAI ACGGC 1 cut(s) 791
BciT130I CCWGG 1 cut(s) 495
BcoDI GTCTC 2 cut(s) 672, 782
BfaI CTAG 4 cut(s) 549, 927, 950, 1244
BfmI CTRYAG 3 cut(s) 182, 335, 1538
BglII AGATCT 1 cut(s) 247
BisI GCNGC 7 cut(s) 185, 210, 819, 903, 924, 1227, 1538
BlsI GCNGC 7 cut(s) 186, 211, 820, 904, 925, 1228, 1539
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 1 cut(s) 737
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 88, 737
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 2 cut(s) 1057, 1090
BpiI GAAGAC 2 cut(s) 162, 1300
BplI GAGNNNNNCTC 2 cut(s) 1025, 1057
BpmI CTGGAG 2 cut(s) 477, 1011
BpuEI CTTGAG 3 cut(s) 389, 641, 1580
Bsa29I ATCGAT 2 cut(s) 78, 315
BsaAI YACGTR 1 cut(s) 394
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 3 cut(s) 636, 1568, 1569
Bse1I ACTGG 3 cut(s) 146, 1185, 1203
BseBI CCWGG 1 cut(s) 495
BseCI ATCGAT 2 cut(s) 78, 315
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 4 cut(s) 46, 283, 724, 1378
BseLI CCNNNNNNNGG 3 cut(s) 636, 1568, 1569
BseMII CTCAG 5 cut(s) 167, 770, 777, 840, 1056
BseNI ACTGG 3 cut(s) 146, 1185, 1203
BseRI GAGGAG 5 cut(s) 68, 236, 390, 1049, 1088
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 7 cut(s) 196, 196, 805, 889, 935, 1213, 1524
BseYI CCCAGC 1 cut(s) 1525
BshFI GGCC 2 cut(s) 89, 1493
BshVI ATCGAT 2 cut(s) 78, 315
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 3 cut(s) 9, 1469, 1494
BslFI GGGAC 1 cut(s) 1542
BslI CCNNNNNNNGG 3 cut(s) 636, 1568, 1569
BsmAI GTCTC 2 cut(s) 672, 782
BsmFI GGGAC 1 cut(s) 1542
BsnI GGCC 2 cut(s) 89, 1493
Bso31I GGTCTC 1 cut(s) 782
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 476
Bsp1407I TGTACA 1 cut(s) 1306
Bsp143I GATC 5 cut(s) 75, 247, 553, 1274, 1555
BspACI CCGC 7 cut(s) 71, 113, 465, 932, 953, 1054, 1070
BspANI GGCC 2 cut(s) 89, 1493
BspCNI CTCAG 5 cut(s) 166, 771, 778, 841, 1055
BspDI ATCGAT 2 cut(s) 78, 315
BspLI GGNNCC 1 cut(s) 90
BspMAI CTGCAG 2 cut(s) 186, 1542
BspPI GGATC 1 cut(s) 1269
BspQI GCTCTTC 1 cut(s) 672
BspTNI GGTCTC 1 cut(s) 782
BsrBI CCGCTC 1 cut(s) 932
BsrGI TGTACA 1 cut(s) 1306
BsrI ACTGG 3 cut(s) 146, 1185, 1203
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 5 cut(s) 75, 247, 553, 1274, 1555
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 2 cut(s) 1286, 1604
Bst6I CTCTTC 4 cut(s) 408, 672, 1467, 1570
BstAPI GCANNNNNTGC 1 cut(s) 818
BstAUI TGTACA 1 cut(s) 1306
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 3 cut(s) 159, 228, 840
BstF5I GGATG 4 cut(s) 46, 283, 724, 1378
BstKTI GATC 5 cut(s) 78, 250, 556, 1277, 1558
BstMAI GTCTC 2 cut(s) 672, 782
BstMBI GATC 5 cut(s) 75, 247, 553, 1274, 1555
BstMWI GCNNNNNNNGC 5 cut(s) 471, 775, 818, 929, 938
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 3 cut(s) 182, 335, 1538
BstSLI GKGCMC 1 cut(s) 476
BstV1I GCAGC 7 cut(s) 196, 196, 805, 889, 935, 1213, 1524
BstV2I GAAGAC 2 cut(s) 162, 1300
BstX2I RGATCY 2 cut(s) 247, 1274
BstYI RGATCY 2 cut(s) 247, 1274
Bsu15I ATCGAT 2 cut(s) 78, 315
BsuRI GGCC 2 cut(s) 89, 1493
BsuTUI ATCGAT 2 cut(s) 78, 315
BtsCI GGATG 4 cut(s) 46, 283, 724, 1378
BtsI GCAGTG 1 cut(s) 948
BtsIMutI CAGTG 1 cut(s) 948
Cac8I GCNNGC 3 cut(s) 159, 228, 840
CaiI CAGNNNCTG 1 cut(s) 818
Cfr13I GGNCC 2 cut(s) 88, 737
ClaI ATCGAT 2 cut(s) 78, 315
CseI GACGC 1 cut(s) 215
Csp6I GTAC 3 cut(s) 973, 1039, 1307
CviAII CATG 4 cut(s) 431, 616, 1112, 1335
CviQI GTAC 3 cut(s) 973, 1039, 1307
DpnI GATC 5 cut(s) 77, 249, 555, 1276, 1557
DpnII GATC 5 cut(s) 75, 247, 553, 1274, 1555
EaeI YGGCCR 1 cut(s) 1491
Eam1104I CTCTTC 4 cut(s) 408, 672, 1467, 1570
EarI CTCTTC 4 cut(s) 408, 672, 1467, 1570
EciI GGCGGA 1 cut(s) 86
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 1 cut(s) 737
Eco57I CTGAAG 2 cut(s) 372, 471
Eco88I CYCGRG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 493
FaeI CATG 4 cut(s) 434, 619, 1115, 1338
FaiI YATR 5 cut(s) 432, 617, 1106, 1113, 1336
FalI AAGNNNNNCTT 6 cut(s) 1008, 1040, 1245, 1277, 1285, 1317
FaqI GGGAC 1 cut(s) 1542
FatI CATG 4 cut(s) 430, 615, 1111, 1334
FauI CCCGC 1 cut(s) 1061
Fnu4HI GCNGC 7 cut(s) 185, 210, 819, 903, 924, 1227, 1538
FokI GGATG 4 cut(s) 53, 290, 731, 1385
Fsp4HI GCNGC 7 cut(s) 185, 210, 819, 903, 924, 1227, 1538
FspBI CTAG 4 cut(s) 549, 927, 950, 1244
GluI GCNGC 7 cut(s) 185, 210, 819, 903, 924, 1227, 1538
GsaI CCCAGC 1 cut(s) 1529
GsuI CTGGAG 2 cut(s) 477, 1011
HaeIII GGCC 2 cut(s) 89, 1493
HapII CCGG 3 cut(s) 9, 1469, 1494
HgaI GACGC 1 cut(s) 215
Hin1II CATG 4 cut(s) 434, 619, 1115, 1338
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaII CCGG 3 cut(s) 9, 1469, 1494
HphI GGTGA 3 cut(s) 127, 734, 1105
Hpy166II GTNNAC 2 cut(s) 205, 1309
Hpy188III TCNNGA 8 cut(s) 38, 505, 671, 990, 1064, 1147, 1626, 1651
Hpy8I GTNNAC 2 cut(s) 205, 1309
HpyAV CCTTC 4 cut(s) 100, 492, 1147, 1510
HpyCH4III ACNGT 2 cut(s) 1286, 1604
HpyCH4IV ACGT 3 cut(s) 393, 845, 1297
HpyCH4V TGCA 5 cut(s) 184, 212, 821, 1229, 1540
HpyF10VI GCNNNNNNNGC 5 cut(s) 471, 775, 818, 929, 938
HpySE526I ACGT 3 cut(s) 393, 845, 1297
Hsp92II CATG 4 cut(s) 434, 619, 1115, 1338
Kzo9I GATC 5 cut(s) 75, 247, 553, 1274, 1555
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 5 cut(s) 223, 496, 511, 766, 1075
Lsp1109I GCAGC 7 cut(s) 196, 196, 805, 889, 935, 1213, 1524
LweI GCATC 2 cut(s) 1057, 1090
MaeI CTAG 4 cut(s) 549, 927, 950, 1244
MaeII ACGT 3 cut(s) 393, 845, 1297
MalI GATC 5 cut(s) 77, 249, 555, 1276, 1557
MbiI CCGCTC 1 cut(s) 932
MboI GATC 5 cut(s) 75, 247, 553, 1274, 1555
MfeI CAATTG 1 cut(s) 707
MflI RGATCY 2 cut(s) 247, 1274
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 4 cut(s) 596, 649, 707, 1364
MlyI GAGTC 3 cut(s) 38, 127, 391
MmeI TCCRAC 3 cut(s) 6, 219, 1096
MroXI GAANNNNTTC 2 cut(s) 1260, 1297
MseI TTAA 3 cut(s) 500, 960, 1049
MslI CAYNNNNRTG 2 cut(s) 20, 435
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 3 cut(s) 9, 1469, 1494
MspR9I CCNGG 1 cut(s) 495
MunI CAATTG 1 cut(s) 707
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 5 cut(s) 471, 775, 818, 929, 938
NdeII GATC 5 cut(s) 75, 247, 553, 1274, 1555
NlaIII CATG 4 cut(s) 434, 619, 1115, 1338
NlaIV GGNNCC 1 cut(s) 90
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 6 cut(s) 188, 361, 394, 943, 1093, 1397
PaeR7I CTCGAG 1 cut(s) 218
PciSI GCTCTTC 1 cut(s) 672
PdmI GAANNNNTTC 2 cut(s) 1260, 1297
PfeI GAWTC 9 cut(s) 12, 98, 123, 132, 455, 581, 995, 1387, 1638
PkrI GCNGC 7 cut(s) 186, 211, 820, 904, 925, 1228, 1539
PleI GAGTC 3 cut(s) 37, 126, 391
PpsI GAGTC 3 cut(s) 37, 126, 391
Ppu21I YACGTR 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 1525
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 2 cut(s) 88, 737
PspXI VCTCGAGB 1 cut(s) 218
PstI CTGCAG 2 cut(s) 186, 1542
PstNI CAGNNNCTG 1 cut(s) 818
PsuI RGATCY 2 cut(s) 247, 1274
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 3 cut(s) 974, 1040, 1308
RsaNI GTAC 3 cut(s) 973, 1039, 1307
RseI CAYNNNNRTG 2 cut(s) 20, 435
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 3 cut(s) 500, 960, 1049
SatI GCNGC 7 cut(s) 185, 210, 819, 903, 924, 1227, 1538
Sau3AI GATC 5 cut(s) 75, 247, 553, 1274, 1555
Sau96I GGNCC 2 cut(s) 88, 737
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 3 cut(s) 38, 127, 391
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 2 cut(s) 1057, 1090
SfcI CTRYAG 3 cut(s) 182, 335, 1538
Sfr274I CTCGAG 1 cut(s) 218
SinI GGWCC 1 cut(s) 737
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 20, 435
SmlI CTYRAG 4 cut(s) 218, 368, 620, 1595
SmoI CTYRAG 4 cut(s) 218, 368, 620, 1595
Sse9I AATT 4 cut(s) 596, 649, 707, 1364
SsiI CCGC 7 cut(s) 71, 113, 465, 932, 953, 1054, 1070
SspMI CTAG 4 cut(s) 549, 927, 950, 1244
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 2 cut(s) 1286, 1604
TaiI ACGT 3 cut(s) 396, 848, 1300
TaqII GACCGA 1 cut(s) 806
TasI AATT 4 cut(s) 596, 649, 707, 1364
TatI WGTACW 2 cut(s) 1038, 1306
TfiI GAWTC 9 cut(s) 12, 98, 123, 132, 455, 581, 995, 1387, 1638
Tru1I TTAA 3 cut(s) 500, 960, 1049
Tru9I TTAA 3 cut(s) 500, 960, 1049
TscAI CASTG 1 cut(s) 948
TseFI GTSAC 6 cut(s) 188, 361, 394, 943, 1093, 1397
TseI GCWGC 7 cut(s) 184, 209, 818, 902, 923, 1226, 1537
Tsp45I GTSAC 6 cut(s) 188, 361, 394, 943, 1093, 1397
TspDTI ATGAA 8 cut(s) 357, 426, 545, 929, 975, 987, 1017, 1100
TspRI CASTG 1 cut(s) 948
VpaK11BI GGWCC 1 cut(s) 737
XapI RAATTY 1 cut(s) 649
XhoI CTCGAG 1 cut(s) 218
XmnI GAANNNNTTC 2 cut(s) 1260, 1297
XspI CTAG 4 cut(s) 549, 927, 950, 1244
ZrmI AGTACT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.