pycom04g15180

WEB family protein At2g38370-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0011829
Physical Location & Seq
Forward (+)
18041010 .. 18043635
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g15180.2

Sequence Viewer

Length: 1869 bp
ATGGAACTCCGGAAAAATCAAACGTACACTTTCGTTTGTACTAATGATCTCTTTCTGCTCAGAAACCAAACATCATTAATCTACACGCGAAGTGTTGTTAGGTTACTGAGAAAATTTCAATCTTTGGTTTCGTTCTGTTGGGATTTCATTTGGGTTGTCGGGTTTGGACATGGAGACCGGAATCATCGGAGTGTCGGAATTGGGTTTGGATGTGGGGGAGGAGGAGAGGGTTTTGAGGGCGGATCGATCGATACTTCGGCCCCTTTTCAATCGGTGAAGGAAGCAGTGAGTCGATTCGGTGGAGTCGGTTACTGGAAGCCCTCTCAGCTCACCAATAAGCCTTCTGGGCCTGCGCAGCATGACATTGAAGATGTTGACACTGCAAAACTCGAGGAGCAGGCTTTGCAGTTGGAGAAAGATCTTACTTTGAAAGAAAGGGAAACGCTGGATGTTCTAATCGAACTTGAAGAAACCAAAAAGATAATTGATGAGTTGAAAAGGAAGCTACAGGAAGAAGTATCTGAAGTGAATGTGGCCCTTGAGGCAAATGGAGGTAAGGAATATGTGACTCCTGTGGTAAATGAAGAGGATAAGGAAAACCATGGCAATGTGGGTGGTCATTACAATTCAATGGGCGGCATGATTCCCTGCCCTTCTTCAGCTCCAGGTTTAATCTTGATGGAACTGAAGCAGGCGAAAATGAACCTTACAAGGACTACTACCGATCTTGCTGACATTCGAGCTTCAGTTGAATCATTGAACAAGAAACTGGAAAAGGAAAGAACCATGCTTGAGAAAACCCGTGTGCGGCTAACTTCAAATTCTTTGAAAGTGTTGTCTCTTGAAGAAGAGTTAAACCAAACAAAACTAAAGCTACAATTGGCAAAGGATGGTGAAACTAAAGGTGGTACTTCTAATTCTTTAGATATTTCAAAGGAGCTTCAACGGCTGAGTTCTGAGACTGAGCAGTTCAAAAGAATGGCAGAAGCTGCAAAGTTAGAGATCTTGCGAGCAACGTCTGAGATTGAACAAACAGGAACGAAGATAAAAACGGCTGAAATCCGGTTGGTTGCTGCGAGAAAAATGAAAGAGGCGGCTAGAGCTGTAGAAGCAGTGGCTCTAGCAGAAATTAAGGCTCTATCATACCACGAGAGTTCATCTGGAGATTCATTGCAGAAATTCGACGACGTAACTCTTTCATTCGAGGAATACTCAGCCCTAACCCGCAAAGTTCGAGATGCAGAGGAACTTTCTAAGAAGAGGGTAACATATGCCATGCTTCATGTTGAAGAAGCAAACGTGTCAAAAACGGAAATCCTGAAAAAAGTAGAGGAAGCAACTGAAGAAGTCAAAACCAGTAAAAAGGAATTGGAAGAAGCTTTGAATAGAGTGGAGGCTGCAAATAGGGGGAAACTAGCAGTTGAAGAAGCTCTCCGCAAATGGAGATCCCAGCACGGTCAAAGAAGACGTTCCGTTCACAACTCTACCAAGTTCAAAAATCCTTGCCCGTCTAATCACAGGAAAGATTTGAAGTTACGCGATGTGAATGGTCTGAATCTTGGTAGTGACGGGCCAACACCTGTGTTGAAGCCAACTTTGTCCATAGGACAAATACTAAGCAGGAAGCTGCTTTTGCCGGAACAGGTTGAAATGGAGATGGCTGGAAAAAACCCTGTAAAACAAAAGGTGTCACTAGGACAAATGCTGCAGAAACAAAATGGTGATCAACCCTCTTCTGGGAGGTCTGAGAGGGAAAGCAATATCAAGAACTGTTCTGGTAAGAGAAAGAAATCTGGATTTGCTCGATTCTCGCTACTCTTGACGAAGCAAAGCAGGAAAAAGAAGAAGCCAACTCCAAACTTGAAGTGA

Protein Analysis

623

Amino Acids

69.57

Weight (kDa)

9.25

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38370 AT2G38370
fragaria_vesca FvH4_6g10230
malus_domestica MD04G1171400.v1.1 MD12G1184800.v1.1
prunus_persica Prupe.6G289900_v2.0.a1
pyrus_communis pycom04g15180 pycom12g17360
rosa_chinensis RchiOBHm_Chr3g0460971
rosa_laevigata RLG00000024962
rosa_multiflora Rmu_sc0006670.1_g000001
rosa_roxburghii Rroxscaffold_6G00418990
rosa_rugosa Rorug03G0047500
rosa_samantha Rh3AG104800 Rh3BG108600 Rh3CG110100 Rh3DG110300 Rh3DG110400
rosa_wichuraiana Rw3G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 354
AccII CGCG 2 cut(s) 88, 1539
AccIII TCCGGA 1 cut(s) 9
AciI CCGC 6 cut(s) 240, 636, 808, 1094, 1225, 1435
AclWI GGATC 2 cut(s) 250, 1440
AcsI RAATTY 3 cut(s) 113, 820, 1178
AcuI CTGAAG 5 cut(s) 543, 642, 707, 729, 1362
AfaI GTAC 3 cut(s) 26, 40, 910
AfiI CCNNNNNNNGG 3 cut(s) 807, 1736, 1737
AflIII ACRYGT 1 cut(s) 1299
AjnI CCWGG 1 cut(s) 664
Alw26I GTCTC 3 cut(s) 168, 843, 953
AlwI GGATC 2 cut(s) 250, 1440
AlwNI CAGNNNCTG 1 cut(s) 989
Ama87I CYCGRG 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 9
AoxI GGCC 4 cut(s) 258, 347, 534, 1571
ApeKI GCWGC 6 cut(s) 355, 989, 1073, 1397, 1627, 1705
ApoI RAATTY 3 cut(s) 113, 820, 1178
AseI ATTAAT 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 1468
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 4 cut(s) 259, 347, 535, 1571
AsuHPI GGTGA 4 cut(s) 286, 322, 905, 1733
AvaI CYCGRG 1 cut(s) 389
BauI CACGAG 1 cut(s) 1148
BbsI GAAGAC 1 cut(s) 1471
BbvI GCAGC 6 cut(s) 367, 976, 1060, 1384, 1614, 1692
BccI CCATC 3 cut(s) 673, 884, 1651
BceAI ACGGC 2 cut(s) 962, 1068
BciT130I CCWGG 1 cut(s) 666
BclI TGATCA 1 cut(s) 1723
BcoDI GTCTC 3 cut(s) 168, 843, 953
BfaI CTAG 4 cut(s) 1098, 1121, 1415, 1694
BfmI CTRYAG 3 cut(s) 506, 1104, 1706
BglI GCCNNNNNGGC 2 cut(s) 346, 542
BglII AGATCT 2 cut(s) 418, 1002
BisI GCNGC 9 cut(s) 356, 637, 809, 990, 1074, 1095, 1398, 1628, 1706
BlsI GCNGC 9 cut(s) 357, 638, 810, 991, 1075, 1096, 1399, 1629, 1707
Bme1390I CCNGG 1 cut(s) 666
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 4 cut(s) 259, 347, 535, 1571
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 666
BmsI GCATC 1 cut(s) 1228
BpiI GAAGAC 1 cut(s) 1471
BplI GAGNNNNNCTC 2 cut(s) 1196, 1228
BpmI CTGGAG 2 cut(s) 648, 1182
BpuEI CTTGAG 2 cut(s) 560, 812
Bsa29I ATCGAT 2 cut(s) 245, 249
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 601
BsaWI WCCGGW 3 cut(s) 9, 177, 1062
Bsc4I CCNNNNNNNGG 3 cut(s) 807, 1736, 1737
Bse1I ACTGG 3 cut(s) 317, 774, 1356
Bse3DI GCAATG 2 cut(s) 613, 1169
BseAI TCCGGA 1 cut(s) 9
BseBI CCWGG 1 cut(s) 666
BseCI ATCGAT 2 cut(s) 245, 249
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 3 cut(s) 215, 454, 895
BseLI CCNNNNNNNGG 3 cut(s) 807, 1736, 1737
BseMI GCAATG 2 cut(s) 613, 1169
BseMII CTCAG 9 cut(s) 73, 98, 338, 941, 948, 954, 1011, 1227, 1737
BseNI ACTGG 3 cut(s) 317, 774, 1356
BseRI GAGGAG 3 cut(s) 234, 237, 407
BseXI GCAGC 6 cut(s) 367, 976, 1060, 1384, 1614, 1692
BseYI CCCAGC 1 cut(s) 1449
Bsh1236I CGCG 2 cut(s) 88, 1539
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 4 cut(s) 260, 349, 536, 1573
BshVI ATCGAT 2 cut(s) 245, 249
BsiEI CGRYCG 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 4 cut(s) 10, 178, 1063, 1637
BslI CCNNNNNNNGG 3 cut(s) 807, 1736, 1737
BsmAI GTCTC 3 cut(s) 168, 843, 953
BsnI GGCC 4 cut(s) 260, 349, 536, 1573
Bso31I GGTCTC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 389
Bsp13I TCCGGA 1 cut(s) 9
Bsp143I GATC 8 cut(s) 46, 242, 246, 418, 724, 1002, 1445, 1723
Bsp19I CCATGG 1 cut(s) 601
BspACI CCGC 6 cut(s) 240, 636, 808, 1094, 1225, 1435
BspANI GGCC 4 cut(s) 260, 349, 536, 1573
BspCNI CTCAG 9 cut(s) 72, 99, 337, 942, 949, 955, 1012, 1226, 1738
BspDI ATCGAT 2 cut(s) 245, 249
BspEI TCCGGA 1 cut(s) 9
BspFNI CGCG 2 cut(s) 88, 1539
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 1710
BspPI GGATC 2 cut(s) 250, 1440
BspTNI GGTCTC 1 cut(s) 168
BsrDI GCAATG 2 cut(s) 613, 1169
BsrI ACTGG 3 cut(s) 317, 774, 1356
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 8 cut(s) 46, 242, 246, 418, 724, 1002, 1445, 1723
BssSI CACGAG 1 cut(s) 1148
BssT1I CCWWGG 1 cut(s) 601
Bst2BI CACGAG 1 cut(s) 1148
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 2 cut(s) 1457, 1772
Bst6I CTCTTC 4 cut(s) 579, 843, 1253, 1738
BstAPI GCANNNNNTGC 2 cut(s) 403, 989
BstC8I GCNNGC 4 cut(s) 351, 399, 693, 1011
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 3 cut(s) 215, 454, 895
BstFNI CGCG 2 cut(s) 88, 1539
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 8 cut(s) 49, 245, 249, 421, 727, 1005, 1448, 1726
BstMAI GTCTC 3 cut(s) 168, 843, 953
BstMBI GATC 8 cut(s) 46, 242, 246, 418, 724, 1002, 1445, 1723
BstMCI CGRYCG 1 cut(s) 249
BstNI CCWGG 1 cut(s) 666
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 3 cut(s) 506, 1104, 1706
BstUI CGCG 2 cut(s) 88, 1539
BstV1I GCAGC 6 cut(s) 367, 976, 1060, 1384, 1614, 1692
BstV2I GAAGAC 1 cut(s) 1471
BstX2I RGATCY 3 cut(s) 418, 1002, 1445
BstYI RGATCY 3 cut(s) 418, 1002, 1445
Bsu15I ATCGAT 2 cut(s) 245, 249
BsuRI GGCC 4 cut(s) 260, 349, 536, 1573
BsuTUI ATCGAT 2 cut(s) 245, 249
BtgI CCRYGG 1 cut(s) 601
BtgZI GCGATG 1 cut(s) 1554
BtsCI GGATG 3 cut(s) 215, 454, 895
BtsI GCAGTG 3 cut(s) 291, 378, 1119
BtsIMutI CAGTG 3 cut(s) 291, 378, 1119
Cac8I GCNNGC 4 cut(s) 351, 399, 693, 1011
CaiI CAGNNNCTG 1 cut(s) 989
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 4 cut(s) 259, 347, 535, 1571
ClaI ATCGAT 2 cut(s) 245, 249
Csp6I GTAC 3 cut(s) 25, 39, 909
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviAII CATG 7 cut(s) 170, 359, 602, 640, 787, 1276, 1283
CviQI GTAC 3 cut(s) 25, 39, 909
DpnI GATC 8 cut(s) 48, 244, 248, 420, 726, 1004, 1447, 1725
DpnII GATC 8 cut(s) 46, 242, 246, 418, 724, 1002, 1445, 1723
Eam1104I CTCTTC 4 cut(s) 579, 843, 1253, 1738
EarI CTCTTC 4 cut(s) 579, 843, 1253, 1738
EciI GGCGGA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 601
Eco31I GGTCTC 1 cut(s) 168
Eco57I CTGAAG 5 cut(s) 543, 642, 707, 729, 1362
Eco88I CYCGRG 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 7 cut(s) 173, 362, 605, 643, 790, 1279, 1286
FatI CATG 7 cut(s) 169, 358, 601, 639, 786, 1275, 1282
FauI CCCGC 1 cut(s) 1232
FauNDI CATATG 1 cut(s) 1270
FbaI TGATCA 1 cut(s) 1723
Fnu4HI GCNGC 9 cut(s) 356, 637, 809, 990, 1074, 1095, 1398, 1628, 1706
FokI GGATG 3 cut(s) 222, 461, 902
Fsp4HI GCNGC 9 cut(s) 356, 637, 809, 990, 1074, 1095, 1398, 1628, 1706
FspBI CTAG 4 cut(s) 1098, 1121, 1415, 1694
FspI TGCGCA 1 cut(s) 354
GlaI GCGC 1 cut(s) 354
GluI GCNGC 9 cut(s) 356, 637, 809, 990, 1074, 1095, 1398, 1628, 1706
GsaI CCCAGC 1 cut(s) 1453
GsuI CTGGAG 2 cut(s) 648, 1182
HaeIII GGCC 4 cut(s) 260, 349, 536, 1573
HapII CCGG 4 cut(s) 10, 178, 1063, 1637
HhaI GCGC 1 cut(s) 355
Hin1II CATG 7 cut(s) 173, 362, 605, 643, 790, 1279, 1286
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 1377
HpaII CCGG 4 cut(s) 10, 178, 1063, 1637
HphI GGTGA 4 cut(s) 286, 322, 905, 1733
Hpy166II GTNNAC 3 cut(s) 27, 376, 1477
Hpy188I TCNGA 8 cut(s) 62, 189, 197, 523, 958, 1021, 1554, 1747
Hpy188III TCNNGA 9 cut(s) 10, 676, 842, 1161, 1235, 1318, 1765, 1794, 1819
Hpy8I GTNNAC 3 cut(s) 27, 376, 1477
Hpy99I CGWCG 2 cut(s) 1187, 1190
HpyAV CCTTC 3 cut(s) 271, 351, 663
HpyCH4III ACNGT 2 cut(s) 1457, 1772
HpyCH4IV ACGT 5 cut(s) 23, 1016, 1188, 1299, 1468
HpyCH4V TGCA 7 cut(s) 383, 406, 992, 1174, 1241, 1400, 1708
HpySE526I ACGT 5 cut(s) 23, 1016, 1188, 1299, 1468
Hsp92II CATG 7 cut(s) 173, 362, 605, 643, 790, 1279, 1286
HspAI GCGC 1 cut(s) 353
Kpn2I TCCGGA 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 1723
Kzo9I GATC 8 cut(s) 46, 242, 246, 418, 724, 1002, 1445, 1723
LmnI GCTCC 3 cut(s) 394, 667, 937
Lsp1109I GCAGC 6 cut(s) 367, 976, 1060, 1384, 1614, 1692
LweI GCATC 1 cut(s) 1228
MaeI CTAG 4 cut(s) 1098, 1121, 1415, 1694
MaeII ACGT 5 cut(s) 23, 1016, 1188, 1299, 1468
MaeIII GTNAC 8 cut(s) 102, 308, 565, 1189, 1264, 1533, 1565, 1689
MalI GATC 8 cut(s) 48, 244, 248, 420, 726, 1004, 1447, 1725
MboI GATC 8 cut(s) 46, 242, 246, 418, 724, 1002, 1445, 1723
MfeI CAATTG 1 cut(s) 878
MflI RGATCY 3 cut(s) 418, 1002, 1445
MlyI GAGTC 3 cut(s) 298, 312, 562
MmeI TCCRAC 2 cut(s) 175, 390
MroI TCCGGA 1 cut(s) 9
MroXI GAANNNNTTC 1 cut(s) 1468
MseI TTAA 4 cut(s) 77, 671, 854, 1131
MslI CAYNNNNRTG 2 cut(s) 189, 606
MspI CCGG 4 cut(s) 10, 178, 1063, 1637
MspR9I CCNGG 1 cut(s) 666
MunI CAATTG 1 cut(s) 878
MvaI CCWGG 1 cut(s) 666
MvnI CGCG 2 cut(s) 88, 1539
NcoI CCATGG 1 cut(s) 601
NdeI CATATG 1 cut(s) 1270
NdeII GATC 8 cut(s) 46, 242, 246, 418, 724, 1002, 1445, 1723
NlaIII CATG 7 cut(s) 173, 362, 605, 643, 790, 1279, 1286
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 3 cut(s) 565, 1565, 1689
NsbI TGCGCA 1 cut(s) 354
PaeR7I CTCGAG 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 1468
PfeI GAWTC 7 cut(s) 181, 294, 643, 752, 1166, 1555, 1806
PkrI GCNGC 9 cut(s) 357, 638, 810, 991, 1075, 1096, 1399, 1629, 1707
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 3 cut(s) 297, 311, 562
PpsI GAGTC 3 cut(s) 297, 311, 562
PshBI ATTAAT 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 664
PspFI CCCAGC 1 cut(s) 1449
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 4 cut(s) 259, 347, 535, 1571
PspXI VCTCGAGB 1 cut(s) 389
PstI CTGCAG 1 cut(s) 1710
PstNI CAGNNNCTG 1 cut(s) 989
PsuI RGATCY 3 cut(s) 418, 1002, 1445
PvuI CGATCG 1 cut(s) 249
RsaI GTAC 3 cut(s) 26, 40, 910
RsaNI GTAC 3 cut(s) 25, 39, 909
RseI CAYNNNNRTG 2 cut(s) 189, 606
SaqAI TTAA 4 cut(s) 77, 671, 854, 1131
SatI GCNGC 9 cut(s) 356, 637, 809, 990, 1074, 1095, 1398, 1628, 1706
Sau3AI GATC 8 cut(s) 46, 242, 246, 418, 724, 1002, 1445, 1723
Sau96I GGNCC 4 cut(s) 259, 347, 535, 1571
SchI GAGTC 3 cut(s) 298, 312, 562
ScrFI CCNGG 1 cut(s) 666
SfaNI GCATC 1 cut(s) 1228
SfcI CTRYAG 3 cut(s) 506, 1104, 1706
Sfr274I CTCGAG 1 cut(s) 389
SlaI CTCGAG 1 cut(s) 389
SmiMI CAYNNNNRTG 2 cut(s) 189, 606
SmlI CTYRAG 3 cut(s) 389, 539, 791
SmoI CTYRAG 3 cut(s) 389, 539, 791
SsiI CCGC 6 cut(s) 240, 636, 808, 1094, 1225, 1435
SspMI CTAG 4 cut(s) 1098, 1121, 1415, 1694
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 2 cut(s) 1457, 1772
TaiI ACGT 5 cut(s) 26, 1019, 1191, 1302, 1471
TatI WGTACW 1 cut(s) 38
TauI GCSGC 3 cut(s) 639, 811, 1097
TfiI GAWTC 7 cut(s) 181, 294, 643, 752, 1166, 1555, 1806
Tru1I TTAA 4 cut(s) 77, 671, 854, 1131
Tru9I TTAA 4 cut(s) 77, 671, 854, 1131
TscAI CASTG 3 cut(s) 291, 385, 1119
TseFI GTSAC 3 cut(s) 565, 1565, 1689
TseI GCWGC 6 cut(s) 355, 989, 1073, 1397, 1627, 1705
Tsp45I GTSAC 3 cut(s) 565, 1565, 1689
TspDTI ATGAA 8 cut(s) 136, 597, 716, 1100, 1146, 1158, 1188, 1271
TspGWI ACGGA 2 cut(s) 1325, 1462
TspRI CASTG 3 cut(s) 291, 385, 1119
VspI ATTAAT 1 cut(s) 77
XapI RAATTY 3 cut(s) 113, 820, 1178
XhoI CTCGAG 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 1468
XspI CTAG 4 cut(s) 1098, 1121, 1415, 1694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.