MD04G1171400.v1.1

WEB family protein At2g38370-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0011829
Physical Location & Seq
Forward (+)
26311953 .. 26314928
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1171400.v1.1.491

Sequence Viewer

Length: 1695 bp
ATGGAGACCGGAATCATCGGAGTGTCGGAGTCGGGTTTGGACGTGGGGAAGGAGGAGAGGGTTTTGAGGGCGGAGATCGATACTTCAGCCCCTTTTCAATCGGTGAAGGAAGCAGTGAGTCGATTCGGTGGAGTCGGTTACTGGAAGCCCTCTCAGCTCACTAATAAGCCTTCTGGGCCTGCACATGACATTGAAGATGTTGACACTGAAAAACTCGAGGAGCAGGCTTTGCAGTTGGAGAAAGATCTTACTTTGAAAGAAAGGGAAACGCTGGATGTTCTAATCGAACTTGAAGAAACCAAAAAGATAATTGATGAGTTGAAAAGGAAGCTACAGGAAGAAGTATCTGAAGTGAATGTGGCCCTTGAGGCAAATGGAGGTAAGGAACATGTGACTCCTGTGGTAAATGAAGAGGATAAGGAAAACCATGGCAATGTGGGTGGTCATTACAATTCAATGGGCGGCATTATTCCCTGTCCTTCTTCAGCTCCAGGTTTAATCTTGATGGAACTGAAGCAGGCGAAAATGAACCTTACAAGGACTACTACCGATCTTGCGGACATTCGAGCTTCAGTTGAATCATTGAAGAAGAAATTGGAAAAGGAAAGAACCATGCTTGAGAAAACCCGTGTGCGGTTAACTTCAAATTCTTCGAAAGTGTTGTCTCTTGAAGAAGAGTTAAACCAAACAAAACTAAAGCTACAATTGGCAAAGGATGGTGAAACTAAAGGTGGTACTGCTAATTCTTTAGATATTTCAAAGGAGCTTCAACGGCTGAGTTCTGAGACTGAGCAGTTCAAAAGAATGGCAGAAGCTGCAAAGTTAGAGATCTTGCAAGCAACGTCTGAGATTGAACAAACAGGAACGAAGATAAAAACGGCTGAAATCCGGTTGGTTGCTGCGAGAAAAATGAAAGAGGCGGCTAGAGCTGTAGAAGCAGTGGCTCTAGCAGAAATTAAGGCTCTATCATACCATGAGAGTTCATCTGGAGATTCATTGCGGAAATTCGACCACGTAACTCTTTCATTCGAGGAATACTCAGACCTAATCCGCAAAGTTCGAGATGCTGAGGAACTTTCTAAGAAGAGGGTAACAGATGCCATGCTTCATGTTGAAGAAGCAAACGTGTCAAAAACGGAAATCCTGAAAAAAGTAGAGGAAGCAACTGAAGAAGTCAAAACCAGTAAAAAGGAATTGGAAGAAGCTCTGAATAGAGTGGAGGCTGCAAATAGGGGGAAACTAGCAGTTGAAGAAGCTCTTCGCAAATGGAGATCCCAGCACGGTCAAAGAAGGCGTTCTGTTCACAACTCTACCAAGTTCAAAAATCCTTGCCCGTCTAATCACGGGATAGATTTGAAATTACGCGATGTGAATGGTCTGAATCTTGTTAGTGACGGGCCAACACCTGTGTTGAAGCCAACTTTGTCGATAGGACAAATACTAAGCAGGAAGCTGCTTTTGCCGGAAGAGGTTGAAATAGAGGTGGCCGGAAAAAACCCTGTAAAACAAAAGGTGTCACTGGGACAAATGCTGCAGAAACAAAATGGTGATCAACCCTCTTCTGGGAAGTCTGAGAGGGAAATCAATATCAAGAACTGTTCTGGTAAGAGAAAGAAGTCTGGATTTGCTCGATTCTCGCTACTCTTGACGAAGCAAAGCAGGAAAAAGAAGAAGCCAACTCCAAACTTAAAGTGA

Protein Analysis

565

Amino Acids

62.77

Weight (kDa)

8.78

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 24 - 114 6.1e-15 Weak chloroplast movement under blue light
WEMBL PF05701 169 - 430 7.7e-50 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011829)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38370 AT2G38370
fragaria_vesca FvH4_6g10230
malus_domestica MD04G1171400.v1.1 MD12G1184800.v1.1
prunus_persica Prupe.6G289900_v2.0.a1
pyrus_communis pycom04g15180 pycom12g17360
rosa_chinensis RchiOBHm_Chr3g0460971
rosa_laevigata RLG00000024962
rosa_multiflora Rmu_sc0006670.1_g000001
rosa_roxburghii Rroxscaffold_6G00418990
rosa_rugosa Rorug03G0047500
rosa_samantha Rh3AG104800 Rh3BG108600 Rh3CG110100 Rh3DG110300 Rh3DG110400
rosa_wichuraiana Rw3G008960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1365
AciI CCGC 7 cut(s) 71, 462, 557, 634, 920, 1000, 1051
AclWI GGATC 1 cut(s) 1266
AcoI YGGCCR 1 cut(s) 1485
AcsI RAATTY 2 cut(s) 646, 1004
AcuI CTGAAG 6 cut(s) 69, 369, 468, 533, 555, 1188
AfaI GTAC 1 cut(s) 736
AfiI CCNNNNNNNGG 3 cut(s) 633, 1562, 1563
AflIII ACRYGT 2 cut(s) 388, 1125
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 490
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
Alw26I GTCTC 2 cut(s) 669, 779
AlwI GGATC 1 cut(s) 1266
AlwNI CAGNNNCTG 1 cut(s) 815
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 4 cut(s) 176, 360, 1397, 1485
ApeKI GCWGC 5 cut(s) 815, 899, 1223, 1453, 1531
ApoI RAATTY 2 cut(s) 646, 1004
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
Asp700I GAANNNNTTC 2 cut(s) 1257, 1294
AspS9I GGNCC 3 cut(s) 176, 361, 1397
AsuHPI GGTGA 3 cut(s) 115, 731, 1559
AsuII TTCGAA 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 215
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 5 cut(s) 802, 886, 1210, 1440, 1518
BccI CCATC 2 cut(s) 499, 710
BceAI ACGGC 2 cut(s) 788, 894
BciT130I CCWGG 1 cut(s) 492
BclI TGATCA 1 cut(s) 1549
BcoDI GTCTC 2 cut(s) 669, 779
BfaI CTAG 3 cut(s) 924, 947, 1241
BfmI CTRYAG 3 cut(s) 332, 930, 1532
BglI GCCNNNNNGGC 2 cut(s) 175, 368
BglII AGATCT 2 cut(s) 244, 828
BisI GCNGC 7 cut(s) 463, 816, 900, 921, 1224, 1454, 1532
BlsI GCNGC 7 cut(s) 464, 817, 901, 922, 1225, 1455, 1533
Bme1390I CCNGG 1 cut(s) 492
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 3 cut(s) 176, 361, 1397
BmrFI CCNGG 1 cut(s) 492
BmrI ACTGGG 1 cut(s) 1529
BmsI GCATC 2 cut(s) 1054, 1087
BmuI ACTGGG 1 cut(s) 1529
BplI GAGNNNNNCTC 2 cut(s) 1022, 1054
BpmI CTGGAG 2 cut(s) 474, 1008
Bpu10I CCTNAGC 1 cut(s) 1068
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 2 cut(s) 386, 638
Bsa29I ATCGAT 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 1015
BsaJI CCNNGG 1 cut(s) 427
BsaWI WCCGGW 2 cut(s) 8, 888
Bsc4I CCNNNNNNNGG 3 cut(s) 633, 1562, 1563
Bse1I ACTGG 3 cut(s) 146, 1182, 1524
Bse3DI GCAATG 2 cut(s) 439, 995
BseBI CCWGG 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 2 cut(s) 280, 721
BseLI CCNNNNNNNGG 3 cut(s) 633, 1562, 1563
BseMI GCAATG 2 cut(s) 439, 995
BseMII CTCAG 8 cut(s) 167, 767, 774, 780, 837, 1053, 1059, 1563
BseNI ACTGG 3 cut(s) 146, 1182, 1524
BseRI GAGGAG 2 cut(s) 68, 233
BseXI GCAGC 5 cut(s) 802, 886, 1210, 1440, 1518
BseYI CCCAGC 1 cut(s) 1275
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 1 cut(s) 1365
BshFI GGCC 4 cut(s) 178, 362, 1399, 1487
BshVI ATCGAT 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 4 cut(s) 9, 889, 1463, 1488
BslFI GGGAC 1 cut(s) 1536
BslI CCNNNNNNNGG 3 cut(s) 633, 1562, 1563
BsmAI GTCTC 2 cut(s) 669, 779
BsmFI GGGAC 1 cut(s) 1536
BsnI GGCC 4 cut(s) 178, 362, 1399, 1487
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 653
Bsp143I GATC 6 cut(s) 75, 244, 550, 828, 1271, 1549
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 7 cut(s) 71, 462, 557, 634, 920, 1000, 1051
BspANI GGCC 4 cut(s) 178, 362, 1399, 1487
BspCNI CTCAG 8 cut(s) 166, 768, 775, 781, 838, 1052, 1060, 1564
BspDI ATCGAT 1 cut(s) 78
BspFNI CGCG 1 cut(s) 1365
BspMAI CTGCAG 1 cut(s) 1536
BspPI GGATC 1 cut(s) 1266
BspQI GCTCTTC 1 cut(s) 1263
BspT104I TTCGAA 1 cut(s) 653
BsrDI GCAATG 2 cut(s) 439, 995
BsrI ACTGG 3 cut(s) 146, 1182, 1524
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 6 cut(s) 75, 244, 550, 828, 1271, 1549
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 1283, 1598
Bst6I CTCTTC 6 cut(s) 405, 669, 1079, 1263, 1461, 1564
BstAPI GCANNNNNTGC 2 cut(s) 229, 815
BstBAI YACGTR 1 cut(s) 1015
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 4 cut(s) 180, 225, 519, 837
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 280, 721
BstFNI CGCG 1 cut(s) 1365
BstKTI GATC 6 cut(s) 78, 247, 553, 831, 1274, 1552
BstMAI GTCTC 2 cut(s) 669, 779
BstMBI GATC 6 cut(s) 75, 244, 550, 828, 1271, 1549
BstMWI GCNNNNNNNGC 9 cut(s) 154, 175, 229, 368, 772, 815, 926, 935, 1459
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 490
BstSFI CTRYAG 3 cut(s) 332, 930, 1532
BstUI CGCG 1 cut(s) 1365
BstV1I GCAGC 5 cut(s) 802, 886, 1210, 1440, 1518
BstX2I RGATCY 3 cut(s) 244, 828, 1271
BstYI RGATCY 3 cut(s) 244, 828, 1271
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 4 cut(s) 178, 362, 1399, 1487
BsuTUI ATCGAT 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 427
BtgZI GCGATG 1 cut(s) 1380
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 2 cut(s) 280, 721
BtsI GCAGTG 2 cut(s) 120, 945
BtsIMutI CAGTG 4 cut(s) 120, 204, 945, 1517
Cac8I GCNNGC 4 cut(s) 180, 225, 519, 837
CaiI CAGNNNCTG 1 cut(s) 815
Cfr13I GGNCC 3 cut(s) 176, 361, 1397
ClaI ATCGAT 1 cut(s) 78
Csp6I GTAC 1 cut(s) 735
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviAII CATG 7 cut(s) 185, 389, 428, 613, 974, 1102, 1109
CviQI GTAC 1 cut(s) 735
DpnI GATC 6 cut(s) 77, 246, 552, 830, 1273, 1551
DpnII GATC 6 cut(s) 75, 244, 550, 828, 1271, 1549
EaeI YGGCCR 1 cut(s) 1485
Eam1104I CTCTTC 6 cut(s) 405, 669, 1079, 1263, 1461, 1564
EarI CTCTTC 6 cut(s) 405, 669, 1079, 1263, 1461, 1564
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 427
Eco57I CTGAAG 6 cut(s) 69, 369, 468, 533, 555, 1188
Eco88I CYCGRG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 7 cut(s) 188, 392, 431, 616, 977, 1105, 1112
FaiI YATR 8 cut(s) 186, 390, 429, 614, 970, 975, 1103, 1110
FalI AAGNNNNNCTT 2 cut(s) 1242, 1274
FaqI GGGAC 1 cut(s) 1536
FatI CATG 7 cut(s) 184, 388, 427, 612, 973, 1101, 1108
FbaI TGATCA 1 cut(s) 1549
Fnu4HI GCNGC 7 cut(s) 463, 816, 900, 921, 1224, 1454, 1532
FokI GGATG 2 cut(s) 287, 728
Fsp4HI GCNGC 7 cut(s) 463, 816, 900, 921, 1224, 1454, 1532
FspBI CTAG 3 cut(s) 924, 947, 1241
GluI GCNGC 7 cut(s) 463, 816, 900, 921, 1224, 1454, 1532
GsaI CCCAGC 1 cut(s) 1279
GsuI CTGGAG 2 cut(s) 474, 1008
HaeIII GGCC 4 cut(s) 178, 362, 1399, 1487
HapII CCGG 4 cut(s) 9, 889, 1463, 1488
Hin1II CATG 7 cut(s) 188, 392, 431, 616, 977, 1105, 1112
HincII GTYRAC 2 cut(s) 202, 639
HindII GTYRAC 2 cut(s) 202, 639
HpaI GTTAAC 1 cut(s) 639
HpaII CCGG 4 cut(s) 9, 889, 1463, 1488
HphI GGTGA 3 cut(s) 115, 731, 1559
Hpy166II GTNNAC 3 cut(s) 202, 639, 1303
Hpy188I TCNGA 9 cut(s) 20, 28, 349, 784, 847, 1042, 1209, 1380, 1573
Hpy188III TCNNGA 8 cut(s) 502, 668, 987, 1061, 1144, 1591, 1620, 1645
Hpy8I GTNNAC 3 cut(s) 202, 639, 1303
HpyAV CCTTC 5 cut(s) 43, 100, 180, 489, 1284
HpyCH4III ACNGT 2 cut(s) 1283, 1598
HpyCH4IV ACGT 4 cut(s) 42, 842, 1014, 1125
HpyCH4V TGCA 6 cut(s) 182, 232, 818, 835, 1226, 1534
HpyF10VI GCNNNNNNNGC 9 cut(s) 154, 175, 229, 368, 772, 815, 926, 935, 1459
HpySE526I ACGT 4 cut(s) 42, 842, 1014, 1125
Hsp92II CATG 7 cut(s) 188, 392, 431, 616, 977, 1105, 1112
Ksp22I TGATCA 1 cut(s) 1549
KspAI GTTAAC 1 cut(s) 639
Kzo9I GATC 6 cut(s) 75, 244, 550, 828, 1271, 1549
LguI GCTCTTC 1 cut(s) 1263
LmnI GCTCC 3 cut(s) 220, 493, 763
Lsp1109I GCAGC 5 cut(s) 802, 886, 1210, 1440, 1518
LweI GCATC 2 cut(s) 1054, 1087
MaeI CTAG 3 cut(s) 924, 947, 1241
MaeII ACGT 4 cut(s) 42, 842, 1014, 1125
MaeIII GTNAC 6 cut(s) 137, 391, 1015, 1090, 1391, 1515
MalI GATC 6 cut(s) 77, 246, 552, 830, 1273, 1551
MboI GATC 6 cut(s) 75, 244, 550, 828, 1271, 1549
MfeI CAATTG 1 cut(s) 704
MflI RGATCY 3 cut(s) 244, 828, 1271
MlyI GAGTC 4 cut(s) 38, 127, 141, 388
MmeI TCCRAC 2 cut(s) 6, 216
MroXI GAANNNNTTC 2 cut(s) 1257, 1294
MseI TTAA 5 cut(s) 497, 638, 680, 957, 1688
MslI CAYNNNNRTG 2 cut(s) 20, 432
MspI CCGG 4 cut(s) 9, 889, 1463, 1488
MspR9I CCNGG 1 cut(s) 492
MunI CAATTG 1 cut(s) 704
MvaI CCWGG 1 cut(s) 492
MvnI CGCG 1 cut(s) 1365
MwoI GCNNNNNNNGC 9 cut(s) 154, 175, 229, 368, 772, 815, 926, 935, 1459
NcoI CCATGG 1 cut(s) 427
NdeII GATC 6 cut(s) 75, 244, 550, 828, 1271, 1549
NlaIII CATG 7 cut(s) 188, 392, 431, 616, 977, 1105, 1112
NmuCI GTSAC 3 cut(s) 391, 1391, 1515
NspI RCATGY 1 cut(s) 392
NspV TTCGAA 1 cut(s) 653
PaeR7I CTCGAG 1 cut(s) 215
PciI ACATGT 1 cut(s) 388
PciSI GCTCTTC 1 cut(s) 1263
PdmI GAANNNNTTC 2 cut(s) 1257, 1294
PfeI GAWTC 6 cut(s) 12, 123, 578, 992, 1381, 1632
PkrI GCNGC 7 cut(s) 464, 817, 901, 922, 1225, 1455, 1533
PleI GAGTC 4 cut(s) 37, 126, 140, 388
PpsI GAGTC 4 cut(s) 37, 126, 140, 388
Ppu21I YACGTR 1 cut(s) 1015
PscI ACATGT 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 1275
PspGI CCWGG 1 cut(s) 490
PspPI GGNCC 3 cut(s) 176, 361, 1397
PspXI VCTCGAGB 1 cut(s) 215
PstI CTGCAG 1 cut(s) 1536
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 3 cut(s) 244, 828, 1271
RsaI GTAC 1 cut(s) 736
RsaNI GTAC 1 cut(s) 735
RseI CAYNNNNRTG 2 cut(s) 20, 432
SapI GCTCTTC 1 cut(s) 1263
SaqAI TTAA 5 cut(s) 497, 638, 680, 957, 1688
SatI GCNGC 7 cut(s) 463, 816, 900, 921, 1224, 1454, 1532
Sau3AI GATC 6 cut(s) 75, 244, 550, 828, 1271, 1549
Sau96I GGNCC 3 cut(s) 176, 361, 1397
SchI GAGTC 4 cut(s) 38, 127, 141, 388
ScrFI CCNGG 1 cut(s) 492
SfaNI GCATC 2 cut(s) 1054, 1087
SfcI CTRYAG 3 cut(s) 332, 930, 1532
Sfr274I CTCGAG 1 cut(s) 215
SfuI TTCGAA 1 cut(s) 653
SlaI CTCGAG 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 20, 432
SmlI CTYRAG 3 cut(s) 215, 365, 617
SmoI CTYRAG 3 cut(s) 215, 365, 617
SsiI CCGC 7 cut(s) 71, 462, 557, 634, 920, 1000, 1051
SspMI CTAG 3 cut(s) 924, 947, 1241
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 2 cut(s) 1283, 1598
TaiI ACGT 4 cut(s) 45, 845, 1017, 1128
TauI GCSGC 2 cut(s) 465, 923
TfiI GAWTC 6 cut(s) 12, 123, 578, 992, 1381, 1632
Tru1I TTAA 5 cut(s) 497, 638, 680, 957, 1688
Tru9I TTAA 5 cut(s) 497, 638, 680, 957, 1688
TscAI CASTG 4 cut(s) 120, 211, 945, 1524
TseFI GTSAC 3 cut(s) 391, 1391, 1515
TseI GCWGC 5 cut(s) 815, 899, 1223, 1453, 1531
Tsp45I GTSAC 3 cut(s) 391, 1391, 1515
TspDTI ATGAA 7 cut(s) 423, 542, 926, 972, 984, 1014, 1097
TspGWI ACGGA 1 cut(s) 1151
TspRI CASTG 4 cut(s) 120, 211, 945, 1524
XapI RAATTY 2 cut(s) 646, 1004
XceI RCATGY 1 cut(s) 392
XhoI CTCGAG 1 cut(s) 215
XmnI GAANNNNTTC 2 cut(s) 1257, 1294
XspI CTAG 3 cut(s) 924, 947, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.