MD12G1184800.v1.1

WEB family protein At2g38370-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
26579969 .. 26583010
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1184800.v1.1.491

Sequence Viewer

Length: 1695 bp
ATGGAGACCGGAATCATCGGAGTGTCGGAGTCGGGTCTGGATGTGAGGAAGGAGGAGAGGGTTTTGAGGGCGGAGATCGATACTTCGGCCCCTTTTGAATCGGTGAAGGAAGCGGTGAGTCGATTCGGTGGGATCGGTTACTGGAAACCCTCTCAGCTTGCTAATAAGCCTTCTGAACCTCTGCATGACATTGAAGATGTTGACGCTGCAAAACTCGAGGAGCAGGCTTTAGAGTTGGAGAAAGATCTTACATTGAAAGAAAGGGAAACGCTGGATGTTCTAATTGAACTTGAAGAAACCAAAAAGACAATCGATGAGTTGAAAAAGAAGCTACAGAACGAAGTATCTGAAGTTAATGTGACCCTTGAGGCAAATGGAGGCAAGGACTACGTGACTCCCGTGGTAAATGAAGAGGATAAGGAAAATCATGGGAATGGGGGTGGTCATTACGATTCGATGGGCGGTGTGTGCCCCTGCCCTTCTTCAGCTCCAGGTTTAATCTTGATGGAGCTGAAACAGGCGAAAATGAACCTTACAAGGACTACTAGCGATCTTGCTGACATTCGAGCTTCTGTTGAATCATTGAACAAGAAATTGGAAAAAGAAAGAACCATGCTTGAGAAAACCCGTGTGAGGCTTACTTCAAATTCTTTGAAAGCGTTGTCTCTTGAAGAAGAACTAAACCAAACAAAACTTAAGCTACAATTGGCAAAGGATGGTGAAACTAAAGGTGGTCCCGCTAATCCTTTAGATATTTCAAGGGAGCTTCAACGGCTGAGTTCTGAGACCGAGCAGTTCAAACGAATGGCAGAAGCTGCGAAGTTAGAGGTCTTGCGAGCAACGTCTGAGATTGAACAGACAGGAACTAAGATAAAAACGGCTGAAATCAGGTTGGTTGCTGCGAGAAAAATGAAAGAGGCAGCTAGAGCGGTAGAAGCAGTGACCCTAGCAGAGATTAAGGCTCTATCGTACCACGAGAGTTCATCTGGAGATTCATTGCAGAAACGCAACGAAGTAACTCTTTCATTCGAGGAGTACTCAGCATTAACCCACAAAGTTCGGGATGCGGAGGAGCTTTCTAAGAAGAGGGTGACAGATGCTATGCTTCATGTTGGAGAAGCAAATGTATCAAAAATGGAAATCTTGAAGAAGGTAGAGGAAGCCACCGAAGAAGTCAAAACCAGTAAAAAGGAACTGGAAGAAGCTCTGAACAGAGTGGAGGCGGCAAATAGGGGGAAACTAGCAGTTGAAGAAGCACTTCGCAAATGGAGATCCCATCACGGTCAAAGAAGACGTTCTGTACACAAGTCTACCAAGTTCAAAAATCCGTGCCCGTCTAATCATGGGAAAGATTTGAAATTACGGGATGTGAATGGTCTGAATCTTGTTAGTGACGGGCCAACGCCTGTGTTGAAGCCAACTTTGTCGATAGGACAAATACTAAGCAGGAAACTGCTTTTGCCGGAAGAGGTTGAAATGGAGGTGGCCGGAAAAATCCCTGTAAAACAGAAGGTATCGCTGGGACAAATGCTGCAGAAACAAAATGGCGATCTACCCTCTTCTGGGAAGTCCGAGAGGGAAAGCAATCTCAAGAACTGTTCTGCAAAGAGAAAGAAGTCTGGATTTGCTCGATTCTCGCTACTCTTGACAAAGCAAAGCAGGAAAAAGAAGAAGCCAACTCCAAACTTGAAGTAA

Protein Analysis

565

Amino Acids

62.73

Weight (kDa)

8.9

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 24 - 113 1.1e-15 Weak chloroplast movement under blue light
WEMBL PF05701 169 - 430 2.5e-47 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011829)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 929
AccI GTMKAC 1 cut(s) 1310
AciI CCGC 7 cut(s) 71, 113, 462, 738, 929, 1067, 1223
AclWI GGATC 2 cut(s) 140, 1266
AcoI YGGCCR 1 cut(s) 1485
AcsI RAATTY 1 cut(s) 646
AcuI CTGAAG 2 cut(s) 369, 468
AfaI GTAC 3 cut(s) 971, 1037, 1302
AfiI CCNNNNNNNGG 3 cut(s) 633, 1562, 1563
AflII CTTAAG 1 cut(s) 695
AjnI CCWGG 1 cut(s) 490
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
Alw26I GTCTC 2 cut(s) 669, 779
AlwI GGATC 2 cut(s) 140, 1266
AlwNI CAGNNNCTG 1 cut(s) 815
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 3 cut(s) 87, 1397, 1485
ApeKI GCWGC 5 cut(s) 206, 815, 899, 920, 1531
ApoI RAATTY 1 cut(s) 646
Asp700I GAANNNNTTC 2 cut(s) 1257, 1294
AspS9I GGNCC 3 cut(s) 88, 734, 1397
AsuHPI GGTGA 4 cut(s) 115, 127, 731, 1102
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 734
BaeGI GKGCMC 2 cut(s) 473, 1334
BauI CACGAG 1 cut(s) 974
BbsI GAAGAC 1 cut(s) 1297
BbvI GCAGC 5 cut(s) 193, 802, 886, 932, 1518
BccI CCATC 4 cut(s) 451, 499, 710, 1284
BceAI ACGGC 2 cut(s) 788, 894
BciT130I CCWGG 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 669, 779
BfaI CTAG 4 cut(s) 546, 924, 947, 1241
BfmI CTRYAG 2 cut(s) 332, 1532
BfrI CTTAAG 1 cut(s) 695
BglII AGATCT 1 cut(s) 244
BisI GCNGC 6 cut(s) 207, 816, 900, 921, 1224, 1532
BlsI GCNGC 6 cut(s) 208, 817, 901, 922, 1225, 1533
BmcAI AGTACT 1 cut(s) 1037
Bme1390I CCNGG 1 cut(s) 492
Bme18I GGWCC 1 cut(s) 734
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 3 cut(s) 88, 734, 1397
BmiI GGNNCC 2 cut(s) 90, 736
BmrFI CCNGG 1 cut(s) 492
BmsI GCATC 2 cut(s) 1054, 1087
BpiI GAAGAC 1 cut(s) 1297
BplI GAGNNNNNCTC 2 cut(s) 1022, 1054
BpmI CTGGAG 2 cut(s) 474, 1008
BpuEI CTTGAG 3 cut(s) 386, 638, 1574
Bsa29I ATCGAT 2 cut(s) 78, 312
BsaAI YACGTR 1 cut(s) 391
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 1 cut(s) 399
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 3 cut(s) 633, 1562, 1563
Bse1I ACTGG 3 cut(s) 146, 1182, 1200
Bse3DI GCAATG 1 cut(s) 995
BseBI CCWGG 1 cut(s) 492
BseCI ATCGAT 2 cut(s) 78, 312
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 5 cut(s) 46, 280, 721, 1069, 1372
BseLI CCNNNNNNNGG 3 cut(s) 633, 1562, 1563
BseMI GCAATG 1 cut(s) 995
BseMII CTCAG 5 cut(s) 167, 767, 774, 837, 1053
BseNI ACTGG 3 cut(s) 146, 1182, 1200
BseRI GAGGAG 4 cut(s) 68, 233, 1046, 1085
BseSI GKGCMC 2 cut(s) 473, 1334
BseXI GCAGC 5 cut(s) 193, 802, 886, 932, 1518
BseYI CCCAGC 1 cut(s) 1519
BshFI GGCC 3 cut(s) 89, 1399, 1487
BshVI ATCGAT 2 cut(s) 78, 312
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 3 cut(s) 9, 1463, 1488
BslFI GGGAC 2 cut(s) 720, 1536
BslI CCNNNNNNNGG 3 cut(s) 633, 1562, 1563
BsmAI GTCTC 2 cut(s) 669, 779
BsmFI GGGAC 2 cut(s) 720, 1536
BsnI GGCC 3 cut(s) 89, 1399, 1487
Bso31I GGTCTC 1 cut(s) 779
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 473, 1334
Bsp1407I TGTACA 1 cut(s) 1300
Bsp143I GATC 6 cut(s) 75, 132, 244, 550, 1271, 1549
BspACI CCGC 7 cut(s) 71, 113, 462, 738, 929, 1067, 1223
BspANI GGCC 3 cut(s) 89, 1399, 1487
BspCNI CTCAG 5 cut(s) 166, 768, 775, 838, 1052
BspDI ATCGAT 2 cut(s) 78, 312
BspLI GGNNCC 2 cut(s) 90, 736
BspMAI CTGCAG 1 cut(s) 1536
BspPI GGATC 2 cut(s) 140, 1266
BspTI CTTAAG 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 779
BsrBI CCGCTC 1 cut(s) 929
BsrDI GCAATG 1 cut(s) 995
BsrGI TGTACA 1 cut(s) 1300
BsrI ACTGG 3 cut(s) 146, 1182, 1200
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 6 cut(s) 75, 132, 244, 550, 1271, 1549
BssSI CACGAG 1 cut(s) 974
Bst2BI CACGAG 1 cut(s) 974
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 1283, 1598
Bst6I CTCTTC 4 cut(s) 405, 1079, 1461, 1564
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 815
BstAUI TGTACA 1 cut(s) 1300
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 3 cut(s) 159, 225, 837
BstDEI CTNAG 8 cut(s) 153, 776, 783, 846, 867, 1039, 1080, 1442
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 5 cut(s) 46, 280, 721, 1069, 1372
BstKTI GATC 6 cut(s) 78, 135, 247, 553, 1274, 1552
BstMAI GTCTC 2 cut(s) 669, 779
BstMBI GATC 6 cut(s) 75, 132, 244, 550, 1271, 1549
BstMWI GCNNNNNNNGC 5 cut(s) 468, 772, 815, 926, 935
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 490
BstSFI CTRYAG 2 cut(s) 332, 1532
BstSLI GKGCMC 2 cut(s) 473, 1334
BstV1I GCAGC 5 cut(s) 193, 802, 886, 932, 1518
BstV2I GAAGAC 1 cut(s) 1297
BstX2I RGATCY 2 cut(s) 244, 1271
BstYI RGATCY 2 cut(s) 244, 1271
Bsu15I ATCGAT 2 cut(s) 78, 312
BsuRI GGCC 3 cut(s) 89, 1399, 1487
BsuTUI ATCGAT 2 cut(s) 78, 312
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 5 cut(s) 46, 280, 721, 1069, 1372
BtsI GCAGTG 1 cut(s) 945
BtsIMutI CAGTG 1 cut(s) 945
Cac8I GCNNGC 3 cut(s) 159, 225, 837
CaiI CAGNNNCTG 1 cut(s) 815
Cfr13I GGNCC 3 cut(s) 88, 734, 1397
ClaI ATCGAT 2 cut(s) 78, 312
CseI GACGC 1 cut(s) 212
Csp6I GTAC 3 cut(s) 970, 1036, 1301
CviAII CATG 5 cut(s) 185, 428, 613, 1109, 1343
CviQI GTAC 3 cut(s) 970, 1036, 1301
DdeI CTNAG 8 cut(s) 153, 776, 783, 846, 867, 1039, 1080, 1442
DpnI GATC 6 cut(s) 77, 134, 246, 552, 1273, 1551
DpnII GATC 6 cut(s) 75, 132, 244, 550, 1271, 1549
EaeI YGGCCR 1 cut(s) 1485
Eam1104I CTCTTC 4 cut(s) 405, 1079, 1461, 1564
EarI CTCTTC 4 cut(s) 405, 1079, 1461, 1564
EciI GGCGGA 1 cut(s) 86
Eco31I GGTCTC 1 cut(s) 779
Eco47I GGWCC 1 cut(s) 734
Eco57I CTGAAG 2 cut(s) 369, 468
Eco88I CYCGRG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 490
FaeI CATG 5 cut(s) 188, 431, 616, 1112, 1346
FaiI YATR 6 cut(s) 186, 429, 614, 1103, 1110, 1344
FalI AAGNNNNNCTT 4 cut(s) 1005, 1037, 1242, 1274
FaqI GGGAC 2 cut(s) 720, 1536
FatI CATG 5 cut(s) 184, 427, 612, 1108, 1342
FauI CCCGC 1 cut(s) 745
FblI GTMKAC 1 cut(s) 1310
Fnu4HI GCNGC 6 cut(s) 207, 816, 900, 921, 1224, 1532
FokI GGATG 5 cut(s) 53, 287, 728, 1076, 1379
Fsp4HI GCNGC 6 cut(s) 207, 816, 900, 921, 1224, 1532
FspBI CTAG 4 cut(s) 546, 924, 947, 1241
GluI GCNGC 6 cut(s) 207, 816, 900, 921, 1224, 1532
GsaI CCCAGC 1 cut(s) 1523
GsuI CTGGAG 2 cut(s) 474, 1008
HaeIII GGCC 3 cut(s) 89, 1399, 1487
HapII CCGG 3 cut(s) 9, 1463, 1488
HgaI GACGC 1 cut(s) 212
Hin1II CATG 5 cut(s) 188, 431, 616, 1112, 1346
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HpaII CCGG 3 cut(s) 9, 1463, 1488
HphI GGTGA 4 cut(s) 115, 127, 731, 1102
Hpy166II GTNNAC 3 cut(s) 202, 1303, 1311
Hpy188I TCNGA 9 cut(s) 20, 28, 175, 349, 784, 847, 1209, 1380, 1573
Hpy188III TCNNGA 9 cut(s) 38, 502, 668, 987, 1061, 1144, 1591, 1620, 1645
Hpy8I GTNNAC 3 cut(s) 202, 1303, 1311
HpyAV CCTTC 6 cut(s) 43, 100, 180, 489, 1144, 1504
HpyCH4III ACNGT 2 cut(s) 1283, 1598
HpyCH4IV ACGT 3 cut(s) 390, 842, 1294
HpyCH4V TGCA 5 cut(s) 184, 209, 1000, 1534, 1604
HpyF10VI GCNNNNNNNGC 5 cut(s) 468, 772, 815, 926, 935
HpyF3I CTNAG 8 cut(s) 153, 776, 783, 846, 867, 1039, 1080, 1442
HpySE526I ACGT 3 cut(s) 390, 842, 1294
Hsp92II CATG 5 cut(s) 188, 431, 616, 1112, 1346
Kzo9I GATC 6 cut(s) 75, 132, 244, 550, 1271, 1549
LmnI GCTCC 5 cut(s) 220, 493, 508, 763, 1072
Lsp1109I GCAGC 5 cut(s) 193, 802, 886, 932, 1518
LweI GCATC 2 cut(s) 1054, 1087
MaeI CTAG 4 cut(s) 546, 924, 947, 1241
MaeII ACGT 3 cut(s) 390, 842, 1294
MaeIII GTNAC 7 cut(s) 137, 358, 391, 940, 1015, 1090, 1391
MalI GATC 6 cut(s) 77, 134, 246, 552, 1273, 1551
MbiI CCGCTC 1 cut(s) 929
MboI GATC 6 cut(s) 75, 132, 244, 550, 1271, 1549
MfeI CAATTG 1 cut(s) 704
MflI RGATCY 2 cut(s) 244, 1271
MhlI GDGCHC 2 cut(s) 473, 1334
MluCI AATT 5 cut(s) 282, 593, 646, 704, 1358
MlyI GAGTC 3 cut(s) 38, 127, 388
MmeI TCCRAC 3 cut(s) 6, 216, 1093
MroXI GAANNNNTTC 2 cut(s) 1257, 1294
MseI TTAA 5 cut(s) 354, 497, 696, 957, 1046
MslI CAYNNNNRTG 2 cut(s) 20, 432
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 3 cut(s) 9, 1463, 1488
MspR9I CCNGG 1 cut(s) 492
MunI CAATTG 1 cut(s) 704
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 5 cut(s) 468, 772, 815, 926, 935
NdeII GATC 6 cut(s) 75, 132, 244, 550, 1271, 1549
NlaIII CATG 5 cut(s) 188, 431, 616, 1112, 1346
NlaIV GGNNCC 2 cut(s) 90, 736
NmuCI GTSAC 5 cut(s) 358, 391, 940, 1090, 1391
PaeR7I CTCGAG 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PdmI GAANNNNTTC 2 cut(s) 1257, 1294
PfeI GAWTC 8 cut(s) 12, 98, 123, 452, 578, 992, 1381, 1632
PkrI GCNGC 6 cut(s) 208, 817, 901, 922, 1225, 1533
PleI GAGTC 3 cut(s) 37, 126, 388
PpsI GAGTC 3 cut(s) 37, 126, 388
Ppu21I YACGTR 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 1519
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 90, 736
PspPI GGNCC 3 cut(s) 88, 734, 1397
PspXI VCTCGAGB 1 cut(s) 215
PstI CTGCAG 1 cut(s) 1536
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 2 cut(s) 244, 1271
RsaI GTAC 3 cut(s) 971, 1037, 1302
RsaNI GTAC 3 cut(s) 970, 1036, 1301
RseI CAYNNNNRTG 2 cut(s) 20, 432
SaqAI TTAA 5 cut(s) 354, 497, 696, 957, 1046
SatI GCNGC 6 cut(s) 207, 816, 900, 921, 1224, 1532
Sau3AI GATC 6 cut(s) 75, 132, 244, 550, 1271, 1549
Sau96I GGNCC 3 cut(s) 88, 734, 1397
ScaI AGTACT 1 cut(s) 1037
SchI GAGTC 3 cut(s) 38, 127, 388
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 2 cut(s) 473, 1334
SfaNI GCATC 2 cut(s) 1054, 1087
SfcI CTRYAG 2 cut(s) 332, 1532
Sfr274I CTCGAG 1 cut(s) 215
SinI GGWCC 1 cut(s) 734
SlaI CTCGAG 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 20, 432
SmlI CTYRAG 5 cut(s) 215, 365, 617, 695, 1589
SmoI CTYRAG 5 cut(s) 215, 365, 617, 695, 1589
Sse9I AATT 5 cut(s) 282, 593, 646, 704, 1358
SsiI CCGC 7 cut(s) 71, 113, 462, 738, 929, 1067, 1223
SspMI CTAG 4 cut(s) 546, 924, 947, 1241
StyD4I CCNGG 1 cut(s) 490
TaaI ACNGT 2 cut(s) 1283, 1598
TaiI ACGT 3 cut(s) 393, 845, 1297
TaqI TCGA 9 cut(s) 78, 121, 216, 312, 455, 565, 1029, 1427, 1630
TaqII GACCGA 1 cut(s) 803
TasI AATT 5 cut(s) 282, 593, 646, 704, 1358
TatI WGTACW 2 cut(s) 1035, 1300
TauI GCSGC 1 cut(s) 1226
TfiI GAWTC 8 cut(s) 12, 98, 123, 452, 578, 992, 1381, 1632
Tru1I TTAA 5 cut(s) 354, 497, 696, 957, 1046
Tru9I TTAA 5 cut(s) 354, 497, 696, 957, 1046
TscAI CASTG 1 cut(s) 945
TseFI GTSAC 5 cut(s) 358, 391, 940, 1090, 1391
TseI GCWGC 5 cut(s) 206, 815, 899, 920, 1531
Tsp45I GTSAC 5 cut(s) 358, 391, 940, 1090, 1391
TspDTI ATGAA 7 cut(s) 423, 542, 926, 972, 984, 1014, 1097
TspGWI ACGGA 1 cut(s) 1317
TspRI CASTG 1 cut(s) 945
Vha464I CTTAAG 1 cut(s) 695
VpaK11BI GGWCC 1 cut(s) 734
XapI RAATTY 1 cut(s) 646
XhoI CTCGAG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 1310
XmnI GAANNNNTTC 2 cut(s) 1257, 1294
XspI CTAG 4 cut(s) 546, 924, 947, 1241
ZrmI AGTACT 1 cut(s) 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.