Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011829

Physical Location & Seq

Genomic Coordinates Forward (+)

26765757 .. 26768906

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G289900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGGAGCCTGATTCGGGTTTGGATGTGAAGAAGGAGAGGGTTTTCAGGGCAGAGATCGATACTTCAGCTCCTTTTGAATCGGTGAGGGAGGCAGTGAGTCGATTCGGTGGAATCGGTTACTGGAAACCCTCTCAGACTAAGCCTTCCGGGCCTGAGCATGACATGGAAGAGGTTGGCACTGCGAAACTGGAGGAGCAGGCTTTACAGTTGGAGAAGGATCTCACTTTGAAAGAAAAGGAAACTCTGGATGTTCTAATAGAACTTGAACAAACTAAAAAGGTTATTGATGAGTTAAAAAAGAAGCTACAGAAAGAAGCATCTGAAGTGAATATGGCCCTTGAGACAAATAGAGGTAAGGAATACATGACTCCAGTGGTAAACGAAGACGATAAGGAAAACCATGGGAATGAGGGTGGTCGCTGTAATTCAATGGAAGGTGTGACTCCATGCCCTTCTTCAGCTCCAGGTTTAATCTTAATGGAATTGAAACAGGCTAAGTTGAACCTTACCAGGACTACCACTGATCTTGCTGACATTCGAGCTTCTGTTGAATCATTCAACAAGAAATTAGAGAAAGAAAGAATCATGCTTGAGAAAACCCGTGTGAGGTTAACATCAAATTCTTTGAAAGTATTATCTCTTGAAGAAGAGCTAAAGAAAACAAAACTAAATCTGCAGTTGGCAAAGGATGCTGAAACTAAAGGTGGTCCTGATAATTCTTTAGATATTTCAAAGGAGCTTCACCGATTGAGTTCTGAGACAGAGCAGTTCAAAAGAATGGCAGAAGTTGCAAAGTCAGAGGTCGTGAGAGCAACGTCCGAGATTGAACAGACAAGAACTAAGATAAAAACAGCTGAAATCAGGTTGGTTGCTGCCAGAAAAATGAAAGAGGCAGCAAGAGCGGTAGAAGCTGTTGCTCTTGCAGAGATTAAGGCTCTATCATACCACGAGAGTTCATCTGGAGATTCATTGCAGAAGCATGACAGAGTAACTCTTTCATTTGAGGAATACTCATCTCTAACTCACAAAGTTCGAGATGCAGAGGAACTTTCTAAGAACAGGGTAACAGATGCCATGCTTCATCTTGATGAAGCAAACGTATCAAAAACAGAAATCCTGAAAAAGGTAGAGGAAGCAACTGAAGAAGTCAAAACCACTAAAAAGGCATTGGAAGAAGCTCTGAACAGAGTGGAGACTGCAAATAAGGGGAAACTAGCAGTTGAAGAAGCTCTTCGCAAATGGAGATCCCAGCACGGTCATAAAAGACGTTCGGTACACAACTCTACCAAGTTCAAAAATCCACACCCATCTATTCATGGGAGAGATCTGCAATTACGTGACGTAAATGGTCTGAATCTTGTTACTGATGGGCCAATACCCGTTCTGAGGCCAACCTTATCAATAGGACAGATACTAAGCAGGAAGCTGCTTTTGCCAGAAGAGGTTGAAATGGGGGTGGCCGGGAAAAGCCCTGTAAGGCAAAAGATGTCACTGGGGCAAATGCTCCAGAAACAAAATGGCGATCAACCCTTTTCTAGGAGGTCTGAGAGGGAAAGCAATGTCAGGAATTCTTCTGCTAAGAGAAAGAAGTCTGGATTTGCTCGATTCTCACTACTTTTGACAAAGCAAAGCAGGAAAAAGAAGAAGCCAACTCCAAACTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

556

Amino Acids

62.46

Weight (kDa)

9.31

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38370 AT2G38370
fragaria_vesca	FvH4_6g10230
malus_domestica	MD04G1171400.v1.1 MD12G1184800.v1.1
prunus_persica	Prupe.6G289900_v2.0.a1
pyrus_communis	pycom04g15180 pycom12g17360
rosa_chinensis	RchiOBHm_Chr3g0460971
rosa_laevigata	RLG00000024962
rosa_multiflora	Rmu_sc0006670.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418990
rosa_rugosa	Rorug03G0047500
rosa_samantha	Rh3AG104800 Rh3BG108600 Rh3CG110100 Rh3DG110300 Rh3DG110400
rosa_wichuraiana	Rw3G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	902
AciI	CCGC	1 cut(s)	902
AclWI	GGATC	2 cut(s)	225, 1239
AcoI	YGGCCR	1 cut(s)	1458
AcsI	RAATTY	2 cut(s)	619, 1567
AcuI	CTGAAG	4 cut(s)	48, 342, 441, 1161
AfaI	GTAC	1 cut(s)	1275
AfiI	CCNNNNNNNGG	5 cut(s)	14, 606, 1123, 1386, 1536
AjnI	CCWGG	2 cut(s)	463, 509
Alw26I	GTCTC	3 cut(s)	335, 752, 1187
AlwI	GGATC	2 cut(s)	225, 1239
AoxI	GGCC	5 cut(s)	149, 333, 1370, 1388, 1458
ApeKI	GCWGC	3 cut(s)	872, 893, 1426
ApoI	RAATTY	2 cut(s)	619, 1567
Asp700I	GAANNNNTTC	1 cut(s)	1230
AspS9I	GGNCC	4 cut(s)	149, 334, 707, 1370
AsuC2I	CCSGG	2 cut(s)	148, 1462
AsuHPI	GGTGA	2 cut(s)	94, 734
AvaII	GGWCC	1 cut(s)	707
BauI	CACGAG	1 cut(s)	947
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	859, 905, 1413
BccI	CCATC	2 cut(s)	1315, 1361
BciT130I	CCWGG	2 cut(s)	465, 511
BcnI	CCSGG	2 cut(s)	148, 1462
BcoDI	GTCTC	3 cut(s)	335, 752, 1187
BfaI	CTAG	2 cut(s)	1214, 1536
BfmI	CTRYAG	2 cut(s)	305, 674
BglI	GCCNNNNNGGC	1 cut(s)	148
BglII	AGATCT	1 cut(s)	1324
BisI	GCNGC	3 cut(s)	873, 894, 1427
BlsI	GCNGC	3 cut(s)	874, 895, 1428
Bme1390I	CCNGG	4 cut(s)	148, 465, 511, 1462
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	4 cut(s)	149, 334, 707, 1370
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	148, 465, 511, 1462
BmrI	ACTGGG	1 cut(s)	1502
BmsI	GCATC	4 cut(s)	326, 679, 1027, 1060
BmuI	ACTGGG	1 cut(s)	1502
BpiI	GAAGAC	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	995, 1027
BpmI	CTGGAG	5 cut(s)	209, 354, 447, 981, 1490
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	359, 611
BpuMI	CCSGG	2 cut(s)	148, 1462
Bsa29I	ATCGAT	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	1337
BsaJI	CCNNGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 606, 1123, 1386, 1536
Bse1I	ACTGG	4 cut(s)	125, 192, 371, 1497
Bse3DI	GCAATG	2 cut(s)	968, 1564
BseBI	CCWGG	2 cut(s)	465, 511
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	3 cut(s)	28, 253, 694
BseLI	CCNNNNNNNGG	5 cut(s)	14, 606, 1123, 1386, 1536
BseMI	GCAATG	2 cut(s)	968, 1564
BseMII	CTCAG	5 cut(s)	144, 146, 747, 1376, 1536
BseNI	ACTGG	4 cut(s)	125, 192, 371, 1497
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	859, 905, 1413
BseYI	CCCAGC	1 cut(s)	1248
BshFI	GGCC	5 cut(s)	151, 335, 1372, 1390, 1460
BshVI	ATCGAT	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	147, 1461
BslI	CCNNNNNNNGG	5 cut(s)	14, 606, 1123, 1386, 1536
BsmAI	GTCTC	3 cut(s)	335, 752, 1187
BsnI	GGCC	5 cut(s)	151, 335, 1372, 1390, 1460
Bsp143I	GATC	6 cut(s)	54, 217, 523, 1244, 1324, 1522
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	1 cut(s)	902
BspANI	GGCC	5 cut(s)	151, 335, 1372, 1390, 1460
BspCNI	CTCAG	5 cut(s)	145, 145, 748, 1377, 1537
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	678
BspPI	GGATC	2 cut(s)	225, 1239
BspQI	GCTCTTC	2 cut(s)	642, 1236
BsrBI	CCGCTC	1 cut(s)	902
BsrDI	GCAATG	2 cut(s)	968, 1564
BsrI	ACTGG	4 cut(s)	125, 192, 371, 1497
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	6 cut(s)	54, 217, 523, 1244, 1324, 1522
BssSI	CACGAG	1 cut(s)	947
BssT1I	CCWWGG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	947
Bst2UI	CCWGG	2 cut(s)	465, 511
Bst4CI	ACNGT	2 cut(s)	207, 1256
Bst6I	CTCTTC	4 cut(s)	162, 642, 1236, 1434
BstAPI	GCANNNNNTGC	2 cut(s)	689, 788
BstBAI	YACGTR	1 cut(s)	1337
BstC8I	GCNNGC	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	400
BstENI	CCTNNNNNAGG	2 cut(s)	1121, 1534
BstF5I	GGATG	3 cut(s)	28, 253, 694
BstKTI	GATC	6 cut(s)	57, 220, 526, 1247, 1327, 1525
BstMAI	GTCTC	3 cut(s)	335, 752, 1187
BstMBI	GATC	6 cut(s)	54, 217, 523, 1244, 1324, 1522
BstMWI	GCNNNNNNNGC	6 cut(s)	148, 689, 788, 899, 908, 1432
BstNI	CCWGG	2 cut(s)	465, 511
BstSCI	CCNGG	4 cut(s)	146, 463, 509, 1460
BstSFI	CTRYAG	2 cut(s)	305, 674
BstV1I	GCAGC	3 cut(s)	859, 905, 1413
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	3 cut(s)	217, 1244, 1324
BstYI	RGATCY	3 cut(s)	217, 1244, 1324
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	5 cut(s)	151, 335, 1372, 1390, 1460
BsuTUI	ATCGAT	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	28, 253, 694
BtsI	GCAGTG	2 cut(s)	99, 177
BtsIMutI	CAGTG	5 cut(s)	99, 177, 378, 519, 1490
Cac8I	GCNNGC	1 cut(s)	198
Cfr13I	GGNCC	4 cut(s)	149, 334, 707, 1370
ClaI	ATCGAT	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	1274
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	9 cut(s)	158, 163, 364, 401, 447, 586, 980, 1075, 1316
CviQI	GTAC	1 cut(s)	1274
DpnI	GATC	6 cut(s)	56, 219, 525, 1246, 1326, 1524
DpnII	GATC	6 cut(s)	54, 217, 523, 1244, 1324, 1522
EaeI	YGGCCR	1 cut(s)	1458
Eam1104I	CTCTTC	4 cut(s)	162, 642, 1236, 1434
EarI	CTCTTC	4 cut(s)	162, 642, 1236, 1434
Eco130I	CCWWGG	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	4 cut(s)	48, 342, 441, 1161
EcoNI	CCTNNNNNAGG	2 cut(s)	1121, 1534
EcoRI	GAATTC	1 cut(s)	1567
EcoRII	CCWGG	2 cut(s)	463, 509
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	9 cut(s)	161, 166, 367, 404, 450, 589, 983, 1078, 1319
FalI	AAGNNNNNCTT	2 cut(s)	1215, 1247
FatI	CATG	9 cut(s)	157, 162, 363, 400, 446, 585, 979, 1074, 1315
Fnu4HI	GCNGC	3 cut(s)	873, 894, 1427
FokI	GGATG	3 cut(s)	35, 260, 701
Fsp4HI	GCNGC	3 cut(s)	873, 894, 1427
FspBI	CTAG	2 cut(s)	1214, 1536
GluI	GCNGC	3 cut(s)	873, 894, 1427
GsaI	CCCAGC	1 cut(s)	1252
GsuI	CTGGAG	5 cut(s)	209, 354, 447, 981, 1490
HaeIII	GGCC	5 cut(s)	151, 335, 1372, 1390, 1460
HapII	CCGG	2 cut(s)	147, 1461
Hin1II	CATG	9 cut(s)	161, 166, 367, 404, 450, 589, 983, 1078, 1319
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HpaI	GTTAAC	1 cut(s)	612
HpaII	CCGG	2 cut(s)	147, 1461
HphI	GGTGA	2 cut(s)	94, 734
Hpy166II	GTNNAC	3 cut(s)	379, 612, 1276
Hpy188I	TCNGA	9 cut(s)	135, 322, 757, 799, 820, 1182, 1353, 1386, 1546
Hpy8I	GTNNAC	3 cut(s)	379, 612, 1276
HpyAV	CCTTC	5 cut(s)	25, 153, 208, 428, 462
HpyCH4III	ACNGT	2 cut(s)	207, 1256
HpyCH4IV	ACGT	5 cut(s)	815, 1098, 1267, 1336, 1341
HpyCH4V	TGCA	7 cut(s)	676, 791, 923, 973, 1040, 1199, 1330
HpyF10VI	GCNNNNNNNGC	6 cut(s)	148, 689, 788, 899, 908, 1432
HpySE526I	ACGT	5 cut(s)	815, 1098, 1267, 1336, 1341
Hsp92II	CATG	9 cut(s)	161, 166, 367, 404, 450, 589, 983, 1078, 1319
KspAI	GTTAAC	1 cut(s)	612
Kzo9I	GATC	6 cut(s)	54, 217, 523, 1244, 1324, 1522
LguI	GCTCTTC	2 cut(s)	642, 1236
LmnI	GCTCC	6 cut(s)	4, 73, 193, 466, 736, 1509
Lsp1109I	GCAGC	3 cut(s)	859, 905, 1413
LweI	GCATC	4 cut(s)	326, 679, 1027, 1060
MaeI	CTAG	2 cut(s)	1214, 1536
MaeII	ACGT	5 cut(s)	815, 1098, 1267, 1336, 1341
MaeIII	GTNAC	7 cut(s)	116, 439, 988, 1063, 1337, 1360, 1488
MalI	GATC	6 cut(s)	56, 219, 525, 1246, 1326, 1524
MbiI	CCGCTC	1 cut(s)	902
MboI	GATC	6 cut(s)	54, 217, 523, 1244, 1324, 1522
MflI	RGATCY	3 cut(s)	217, 1244, 1324
MluCI	AATT	7 cut(s)	424, 482, 566, 619, 715, 1331, 1567
MlyI	GAGTC	3 cut(s)	106, 361, 436
MmeI	TCCRAC	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	1230
MseI	TTAA	5 cut(s)	293, 470, 476, 611, 930
MslI	CAYNNNNRTG	2 cut(s)	405, 1086
MspA1I	CMGCKG	1 cut(s)	854
MspI	CCGG	2 cut(s)	147, 1461
MspR9I	CCNGG	4 cut(s)	148, 465, 511, 1462
MvaI	CCWGG	2 cut(s)	465, 511
MwoI	GCNNNNNNNGC	6 cut(s)	148, 689, 788, 899, 908, 1432
NciI	CCSGG	2 cut(s)	148, 1462
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	6 cut(s)	54, 217, 523, 1244, 1324, 1522
NlaIII	CATG	9 cut(s)	161, 166, 367, 404, 450, 589, 983, 1078, 1319
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	439, 1337, 1488
PciSI	GCTCTTC	2 cut(s)	642, 1236
PdmI	GAANNNNTTC	1 cut(s)	1230
PfeI	GAWTC	9 cut(s)	11, 77, 102, 111, 551, 582, 965, 1354, 1605
PkrI	GCNGC	3 cut(s)	874, 895, 1428
PleI	GAGTC	3 cut(s)	105, 361, 436
PpsI	GAGTC	3 cut(s)	105, 361, 436
Ppu21I	YACGTR	1 cut(s)	1337
Psp6I	CCWGG	2 cut(s)	463, 509
PspFI	CCCAGC	1 cut(s)	1248
PspGI	CCWGG	2 cut(s)	463, 509
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	4 cut(s)	149, 334, 707, 1370
PstI	CTGCAG	1 cut(s)	678
PsuI	RGATCY	3 cut(s)	217, 1244, 1324
PvuII	CAGCTG	1 cut(s)	854
RsaI	GTAC	1 cut(s)	1275
RsaNI	GTAC	1 cut(s)	1274
RseI	CAYNNNNRTG	2 cut(s)	405, 1086
SapI	GCTCTTC	2 cut(s)	642, 1236
SaqAI	TTAA	5 cut(s)	293, 470, 476, 611, 930
SatI	GCNGC	3 cut(s)	873, 894, 1427
Sau3AI	GATC	6 cut(s)	54, 217, 523, 1244, 1324, 1522
Sau96I	GGNCC	4 cut(s)	149, 334, 707, 1370
SchI	GAGTC	3 cut(s)	106, 361, 436
ScrFI	CCNGG	4 cut(s)	148, 465, 511, 1462
SfaNI	GCATC	4 cut(s)	326, 679, 1027, 1060
SfcI	CTRYAG	2 cut(s)	305, 674
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	405, 1086
SmlI	CTYRAG	2 cut(s)	338, 590
SmoI	CTYRAG	2 cut(s)	338, 590
Sse9I	AATT	7 cut(s)	424, 482, 566, 619, 715, 1331, 1567
SsiI	CCGC	1 cut(s)	902
SspMI	CTAG	2 cut(s)	1214, 1536
StyD4I	CCNGG	4 cut(s)	146, 463, 509, 1460
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	207, 1256
TaiI	ACGT	5 cut(s)	818, 1101, 1270, 1339, 1344
TaqI	TCGA	5 cut(s)	57, 100, 538, 1033, 1603
TasI	AATT	7 cut(s)	424, 482, 566, 619, 715, 1331, 1567
TfiI	GAWTC	9 cut(s)	11, 77, 102, 111, 551, 582, 965, 1354, 1605
Tru1I	TTAA	5 cut(s)	293, 470, 476, 611, 930
Tru9I	TTAA	5 cut(s)	293, 470, 476, 611, 930
TscAI	CASTG	5 cut(s)	99, 184, 378, 526, 1497
TseFI	GTSAC	3 cut(s)	439, 1337, 1488
TseI	GCWGC	3 cut(s)	872, 893, 1426
Tsp45I	GTSAC	3 cut(s)	439, 1337, 1488
TspDTI	ATGAA	7 cut(s)	899, 945, 957, 987, 1070, 1104, 1304
TspRI	CASTG	5 cut(s)	99, 184, 378, 526, 1497
VpaK11BI	GGWCC	1 cut(s)	707
XagI	CCTNNNNNAGG	2 cut(s)	1121, 1534
XapI	RAATTY	2 cut(s)	619, 1567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1514
XmnI	GAANNNNTTC	1 cut(s)	1230
XspI	CTAG	2 cut(s)	1214, 1536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.