Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011829

Physical Location & Seq

Genomic Coordinates Reverse (-)

8952117 .. 8955454

Gene Structure 3338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG110400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGGAGCCCGATAAAAGCGGCGTGAATGGGGGAGTGCCCGGGTCGGGTTTGCGGGCGGAGATCGACACGTCGGCGCCGTTTGAATCGGTGAAGGAGGCGGTGAGTCGATTCGGTGGAGTCGGGTACTGGAAACCCTCAAATGCCAATAAGTATTCGGAGCCTGAGCATGACATGGAAGAGGTCGACACTGAAAAACTGGAGGAGCAGGCTTTACAGTTGGAGAAAGATCTCACTTTGAAAGAAAGGGAAACTCTTGATGTTCTAATAGAACTGGAACAAACCAAAAAGATTATTGATGAATTGAAGAAAAGGCTACAGAAAGAAGTATCTGAAGTGGACCTCGAGACAGATGTAGGTAAGGACTACATGACTCCTGTGGTAAATGAAGCAGATAAGGAAAACCATGGGAATGGGAACAATGGCAGCCATTGCAATGCACGGGAAGGTGTGAGCTCTTGTCCTTCTTCAGCACCAGGTTTAATCTTAATGGAATTGAAACAAGCTAAGGTGAACCTTACCAGGACTACTAGTGATCTTGCTGACATTCGGGCTTCTGTTGAAACATTCAACAAGAAATTAGAGAAGGAAAGAGTCGCACTTGAGAAGACCCGTGTCAGGTTAACTTCAAATTCTTTAAAAATGTTGTCTCTTGAAGAAGAGCTCAACCAGACAAAACAAAAGCTACAGTTGGCAAAGGATGCTGAATCTAAAGGTGCCCCTGATAAGTCCTTAGATATTTCAAAGGAGCTTCGACGACTGAGTTCTGAGACGGAGCAGTTCAAAAAAATGGCAGAAGCTGCCAAGTTAGAGGTTTCGAGAGCAACTTCCGAGATTGAGCAGACGAGAGGTAAGATAAAGACAGCTGAAATCAGGTTGGTTGCCGCGAGAAAGATGAAAGCAGCAGCTAGAGCTGCAGAAGCTTTTGCTCTTGCAGAAATTAAGGCTCTATCAAACCAGGAGAATTCATCTGGAGATGCATTGCAGAAACCTGAAGGAGTAACTCTTTCATTTGAAGAATACTCAACCTTAACCCGCAAGGTTCGAGATGCAGAAGAGCTTTCTAAGAAGAGAGTAAGAGATGCCATGAAGCATGTTGATGATGCAAATGTATCGAAAACAGAAATCTTGAAGAAAGTAGAAGAAGCAACCGAGGAAGTCAAAACCAGTAAAAAGGCATTGGAAGAAGCACTGAACAGAGTGGAGGCTGCAAATAGGGGCAAGCTGGCAGTGGAAGAAGCTCTTCGCAAATGGAGATCCCAGCATGGTCAAAAAAGACGTTCTTCAGTACACAACTCTGCCAAGTTCAAGAATCCTTGCCCATCAAATCATGCCAGAGAGTTGCAATTGCGTGACGTAAATGGTCTGAATCTAGTTGGTGATGAATCAATGCCGGTTCTGAGGCCAACCTTGTCAATCGGACAAATCCTAAGCAGGAAGTTGCTTATGCCTGAAGAGGATGAAATGGAACTGACCGAAAAGACACTTATAAAACAAAAGGTGTCACTGGGTCAGATGCTCAGCAAGCAAAACGGTGATCAACCCTCTTCTAAGAAGTTTGAGAAGGAAAGTGGTCTCAAGAATTTTTCTGCTAAAAGAAAGAAGTCCGGATTTGCTCGGTTCTCACTTCTTTTGACAAAGCAAAGCAGGAAGAAGAAGAAGCCAACTCCAGACTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

559

Amino Acids

62.45

Weight (kDa)

9.05

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WEMBL	PF05701	19 - 108	4.5e-17	Weak chloroplast movement under blue light
WEMBL	PF05701	163 - 424	4.4e-50	Weak chloroplast movement under blue light

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38370 AT2G38370
fragaria_vesca	FvH4_6g10230
malus_domestica	MD04G1171400.v1.1 MD12G1184800.v1.1
prunus_persica	Prupe.6G289900_v2.0.a1
pyrus_communis	pycom04g15180 pycom12g17360
rosa_chinensis	RchiOBHm_Chr3g0460971
rosa_laevigata	RLG00000024962
rosa_multiflora	Rmu_sc0006670.1_g000001
rosa_roxburghii	Rroxscaffold_6G00418990
rosa_rugosa	Rorug03G0047500
rosa_samantha	Rh3AG104800 Rh3BG108600 Rh3CG110100 Rh3DG110300 Rh3DG110400
rosa_wichuraiana	Rw3G008960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1487
AccB1I	GGYRCC	2 cut(s)	73, 713
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	884
AccIII	TCCGGA	1 cut(s)	1604
AciI	CCGC	6 cut(s)	18, 52, 56, 98, 882, 1033
AclWI	GGATC	1 cut(s)	1248
AcsI	RAATTY	3 cut(s)	628, 961, 1579
AcuI	CTGAAG	5 cut(s)	351, 450, 1011, 1266, 1470
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	2 cut(s)	125, 1287
AfiI	CCNNNNNNNGG	2 cut(s)	44, 615
AflIII	ACRYGT	1 cut(s)	66
AhlI	ACTAGT	1 cut(s)	527
AjiI	CACGTC	1 cut(s)	69
AjnI	CCWGG	3 cut(s)	472, 518, 954
Alw21I	GWGCWC	2 cut(s)	455, 663
Alw26I	GTCTC	4 cut(s)	338, 651, 761, 1577
AlwI	GGATC	1 cut(s)	1248
AlwNI	CAGNNNCTG	1 cut(s)	797
Ama87I	CYCGRG	2 cut(s)	38, 341
Aor13HI	TCCGGA	1 cut(s)	1604
AoxI	GGCC	1 cut(s)	1400
ApeKI	GCWGC	6 cut(s)	423, 797, 899, 902, 911, 1205
ApoI	RAATTY	3 cut(s)	628, 961, 1579
Asp700I	GAANNNNTTC	1 cut(s)	1239
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	2 cut(s)	39, 40
AsuHPI	GGTGA	5 cut(s)	100, 112, 520, 1388, 1544
AvaI	CYCGRG	2 cut(s)	38, 341
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	2 cut(s)	39, 718
BanI	GGYRCC	2 cut(s)	73, 713
BanII	GRGCYC	3 cut(s)	9, 455, 663
BbsI	GAAGAC	1 cut(s)	611
Bbv12I	GWGCWC	2 cut(s)	455, 663
BbvI	GCAGC	6 cut(s)	435, 784, 898, 911, 914, 1192
BccI	CCATC	1 cut(s)	1327
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	1092, 1126
BciT130I	CCWGG	3 cut(s)	474, 520, 956
BclI	TGATCA	1 cut(s)	1534
BcnI	CCSGG	2 cut(s)	39, 40
BcoDI	GTCTC	4 cut(s)	338, 651, 761, 1577
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	3 cut(s)	528, 906, 1370
BfmI	CTRYAG	3 cut(s)	314, 683, 912
BfoI	RGCGCY	1 cut(s)	77
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	8 cut(s)	19, 424, 798, 882, 900, 903, 912, 1206
BlpI	GCTNAGC	1 cut(s)	1517
BlsI	GCNGC	8 cut(s)	20, 425, 799, 883, 901, 904, 913, 1207
Bme1390I	CCNGG	5 cut(s)	39, 40, 474, 520, 956
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	2 cut(s)	38, 341
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	4 cut(s)	6, 75, 159, 715
BmrFI	CCNGG	5 cut(s)	39, 40, 474, 520, 956
BmrI	ACTGGG	1 cut(s)	1514
BmsI	GCATC	6 cut(s)	688, 964, 1036, 1069, 1090, 1503
BmuI	ACTGGG	1 cut(s)	1514
BoxI	GACNNNNGTC	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	611
BpmI	CTGGAG	3 cut(s)	218, 990, 1650
Bpu10I	CCTNAGC	3 cut(s)	162, 504, 1427
Bpu1102I	GCTNAGC	1 cut(s)	1517
BpuEI	CTTGAG	2 cut(s)	620, 1559
BpuMI	CCSGG	2 cut(s)	39, 40
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	1577
BsaJI	CCNNGG	3 cut(s)	38, 403, 1149
BsaWI	WCCGGW	1 cut(s)	1604
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 615
Bse118I	RCCGGY	1 cut(s)	1390
Bse1I	ACTGG	5 cut(s)	131, 201, 276, 1164, 1509
Bse3DI	GCAATG	3 cut(s)	427, 439, 977
BseAI	TCCGGA	1 cut(s)	1604
BseBI	CCWGG	3 cut(s)	474, 520, 956
BseDI	CCNNGG	3 cut(s)	38, 403, 1149
BseGI	GGATG	2 cut(s)	703, 1462
BseLI	CCNNNNNNNGG	2 cut(s)	44, 615
BseMI	GCAATG	3 cut(s)	427, 439, 977
BseMII	CTCAG	5 cut(s)	153, 749, 756, 1388, 1531
BseNI	ACTGG	5 cut(s)	131, 201, 276, 1164, 1509
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	2 cut(s)	39, 718
BseXI	GCAGC	6 cut(s)	435, 784, 898, 911, 914, 1192
BseYI	CCCAGC	1 cut(s)	1257
Bsh1236I	CGCG	1 cut(s)	884
BshFI	GGCC	1 cut(s)	1402
BshNI	GGYRCC	2 cut(s)	73, 713
BsiHKAI	GWGCWC	2 cut(s)	455, 663
BsiHKCI	CYCGRG	2 cut(s)	38, 341
BsiSI	CCGG	3 cut(s)	39, 1391, 1605
BslI	CCNNNNNNNGG	2 cut(s)	44, 615
BsmAI	GTCTC	4 cut(s)	338, 651, 761, 1577
BsmBI	CGTCTC	1 cut(s)	761
BsnI	GGCC	1 cut(s)	1402
Bso31I	GGTCTC	1 cut(s)	1577
BsoBI	CYCGRG	2 cut(s)	38, 341
Bsp1286I	GDGCHC	5 cut(s)	9, 39, 455, 663, 718
Bsp13I	TCCGGA	1 cut(s)	1604
Bsp143I	GATC	5 cut(s)	60, 226, 532, 1253, 1534
Bsp1720I	GCTNAGC	1 cut(s)	1517
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	6 cut(s)	18, 52, 56, 98, 882, 1033
BspANI	GGCC	1 cut(s)	1402
BspCNI	CTCAG	5 cut(s)	154, 750, 757, 1389, 1530
BspEI	TCCGGA	1 cut(s)	1604
BspFNI	CGCG	1 cut(s)	884
BspLI	GGNNCC	4 cut(s)	6, 75, 159, 715
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	1 cut(s)	1248
BspQI	GCTCTTC	3 cut(s)	651, 1047, 1245
BspT107I	GGYRCC	2 cut(s)	73, 713
BspTNI	GGTCTC	1 cut(s)	1577
BsrDI	GCAATG	3 cut(s)	427, 439, 977
BsrFI	RCCGGY	1 cut(s)	1390
BsrI	ACTGG	5 cut(s)	131, 201, 276, 1164, 1509
BssAI	RCCGGY	1 cut(s)	1390
BssECI	CCNNGG	3 cut(s)	38, 403, 1149
BssMI	GATC	5 cut(s)	60, 226, 532, 1253, 1534
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	403
Bst2UI	CCWGG	3 cut(s)	474, 520, 956
Bst4CI	ACNGT	3 cut(s)	216, 687, 1532
Bst6I	CTCTTC	7 cut(s)	171, 651, 1047, 1061, 1245, 1446, 1549
BstACI	GRCGYC	1 cut(s)	74
BstAPI	GCANNNNNTGC	3 cut(s)	429, 698, 797
BstC8I	GCNNGC	5 cut(s)	54, 207, 1220, 1224, 1523
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	703, 1462
BstFNI	CGCG	1 cut(s)	884
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	5 cut(s)	63, 229, 535, 1256, 1537
BstMAI	GTCTC	4 cut(s)	338, 651, 761, 1577
BstMBI	GATC	5 cut(s)	60, 226, 532, 1253, 1534
BstMWI	GCNNNNNNNGC	7 cut(s)	429, 698, 797, 908, 911, 917, 1522
BstNI	CCWGG	3 cut(s)	474, 520, 956
BstNSI	RCATGY	1 cut(s)	1094
BstPAI	GACNNNNGTC	1 cut(s)	611
BstSCI	CCNGG	5 cut(s)	37, 38, 472, 518, 954
BstSFI	CTRYAG	3 cut(s)	314, 683, 912
BstSLI	GKGCMC	2 cut(s)	39, 718
BstUI	CGCG	1 cut(s)	884
BstV1I	GCAGC	6 cut(s)	435, 784, 898, 911, 914, 1192
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	2 cut(s)	226, 1253
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstYI	RGATCY	2 cut(s)	226, 1253
BsuRI	GGCC	1 cut(s)	1402
BtgI	CCRYGG	1 cut(s)	403
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	703, 1462
BtsI	GCAGTG	1 cut(s)	1233
BtsIMutI	CAGTG	4 cut(s)	186, 1187, 1233, 1502
Cac8I	GCNNGC	5 cut(s)	54, 207, 1220, 1224, 1523
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	1390
Cfr13I	GGNCC	1 cut(s)	337
Cfr9I	CCCGGG	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	2 cut(s)	124, 1286
CviAII	CATG	8 cut(s)	167, 172, 367, 404, 1084, 1091, 1262, 1328
CviQI	GTAC	2 cut(s)	124, 1286
DinI	GGCGCC	1 cut(s)	75
DpnI	GATC	5 cut(s)	62, 228, 534, 1255, 1536
DpnII	GATC	5 cut(s)	60, 226, 532, 1253, 1534
DraI	TTTAAA	1 cut(s)	636
Eam1104I	CTCTTC	7 cut(s)	171, 651, 1047, 1061, 1245, 1446, 1549
EarI	CTCTTC	7 cut(s)	171, 651, 1047, 1061, 1245, 1446, 1549
EciI	GGCGGA	1 cut(s)	71
Ecl136II	GAGCTC	2 cut(s)	453, 661
Eco130I	CCWWGG	1 cut(s)	403
Eco24I	GRGCYC	3 cut(s)	9, 455, 663
Eco31I	GGTCTC	1 cut(s)	1577
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	2 cut(s)	453, 661
Eco57I	CTGAAG	5 cut(s)	351, 450, 1011, 1266, 1470
Eco88I	CYCGRG	2 cut(s)	38, 341
EcoICRI	GAGCTC	2 cut(s)	453, 661
EcoRI	GAATTC	1 cut(s)	961
EcoRII	CCWGG	3 cut(s)	472, 518, 954
EcoT14I	CCWWGG	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	979
EcoT38I	GRGCYC	3 cut(s)	9, 455, 663
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	403
Esp3I	CGTCTC	1 cut(s)	761
FaeI	CATG	8 cut(s)	170, 175, 370, 407, 1087, 1094, 1265, 1331
FalI	AAGNNNNNCTT	4 cut(s)	1224, 1256, 1264, 1296
FatI	CATG	8 cut(s)	166, 171, 366, 403, 1083, 1090, 1261, 1327
FauI	CCCGC	2 cut(s)	45, 1040
FbaI	TGATCA	1 cut(s)	1534
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	8 cut(s)	19, 424, 798, 882, 900, 903, 912, 1206
FokI	GGATG	2 cut(s)	710, 1469
FriOI	GRGCYC	3 cut(s)	9, 455, 663
Fsp4HI	GCNGC	8 cut(s)	19, 424, 798, 882, 900, 903, 912, 1206
FspBI	CTAG	3 cut(s)	528, 906, 1370
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	8 cut(s)	19, 424, 798, 882, 900, 903, 912, 1206
GsaI	CCCAGC	1 cut(s)	1261
GsuI	CTGGAG	3 cut(s)	218, 990, 1650
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	1402
HapII	CCGG	3 cut(s)	39, 1391, 1605
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	8 cut(s)	170, 175, 370, 407, 1087, 1094, 1265, 1331
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	2 cut(s)	184, 621
HindII	GTYRAC	2 cut(s)	184, 621
HindIII	AAGCTT	1 cut(s)	918
HpaI	GTTAAC	1 cut(s)	621
HpaII	CCGG	3 cut(s)	39, 1391, 1605
HphI	GGTGA	5 cut(s)	100, 112, 520, 1388, 1544
Hpy166II	GTNNAC	5 cut(s)	184, 337, 511, 621, 1288
Hpy188I	TCNGA	8 cut(s)	157, 331, 766, 829, 1365, 1398, 1418, 1512
Hpy8I	GTNNAC	5 cut(s)	184, 337, 511, 621, 1288
Hpy99I	CGWCG	2 cut(s)	73, 756
HpyAV	CCTTC	6 cut(s)	85, 437, 471, 577, 986, 1555
HpyCH4III	ACNGT	3 cut(s)	216, 687, 1532
HpyCH4IV	ACGT	3 cut(s)	68, 1276, 1353
HpyF10VI	GCNNNNNNNGC	7 cut(s)	429, 698, 797, 908, 911, 917, 1522
HpySE526I	ACGT	3 cut(s)	68, 1276, 1353
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	8 cut(s)	170, 175, 370, 407, 1087, 1094, 1265, 1331
HspAI	GCGC	1 cut(s)	74
KasI	GGCGCC	1 cut(s)	73
Kpn2I	TCCGGA	1 cut(s)	1604
Ksp22I	TGATCA	1 cut(s)	1534
KspAI	GTTAAC	1 cut(s)	621
Kzo9I	GATC	5 cut(s)	60, 226, 532, 1253, 1534
LguI	GCTCTTC	3 cut(s)	651, 1047, 1245
LmnI	GCTCC	5 cut(s)	4, 157, 202, 745, 772
Lsp1109I	GCAGC	6 cut(s)	435, 784, 898, 911, 914, 1192
LweI	GCATC	6 cut(s)	688, 964, 1036, 1069, 1090, 1503
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	3 cut(s)	528, 906, 1370
MaeII	ACGT	3 cut(s)	68, 1276, 1353
MaeIII	GTNAC	3 cut(s)	997, 1349, 1500
MalI	GATC	5 cut(s)	62, 228, 534, 1255, 1536
MboI	GATC	5 cut(s)	60, 226, 532, 1253, 1534
MfeI	CAATTG	1 cut(s)	1343
MflI	RGATCY	2 cut(s)	226, 1253
MhlI	GDGCHC	5 cut(s)	9, 39, 455, 663, 718
MluCI	AATT	8 cut(s)	299, 491, 575, 628, 936, 961, 1343, 1579
Mly113I	GGCGCC	1 cut(s)	74
MlyI	GAGTC	4 cut(s)	112, 126, 364, 600
MmeI	TCCRAC	1 cut(s)	198
Mph1103I	ATGCAT	1 cut(s)	979
MroI	TCCGGA	1 cut(s)	1604
MroXI	GAANNNNTTC	1 cut(s)	1239
MseI	TTAA	6 cut(s)	479, 485, 620, 635, 939, 1028
MslI	CAYNNNNRTG	3 cut(s)	408, 432, 1095
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	3 cut(s)	39, 1391, 1605
MspR9I	CCNGG	5 cut(s)	39, 40, 474, 520, 956
MunI	CAATTG	1 cut(s)	1343
MvaI	CCWGG	3 cut(s)	474, 520, 956
MvnI	CGCG	1 cut(s)	884
MwoI	GCNNNNNNNGC	7 cut(s)	429, 698, 797, 908, 911, 917, 1522
NarI	GGCGCC	1 cut(s)	74
NciI	CCSGG	2 cut(s)	39, 40
NcoI	CCATGG	1 cut(s)	403
NdeII	GATC	5 cut(s)	60, 226, 532, 1253, 1534
NlaIII	CATG	8 cut(s)	170, 175, 370, 407, 1087, 1094, 1265, 1331
NlaIV	GGNNCC	4 cut(s)	6, 75, 159, 715
NmuCI	GTSAC	2 cut(s)	1349, 1500
NsiI	ATGCAT	1 cut(s)	979
NspI	RCATGY	1 cut(s)	1094
PaeR7I	CTCGAG	1 cut(s)	341
PciSI	GCTCTTC	3 cut(s)	651, 1047, 1245
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	1239
PfeI	GAWTC	6 cut(s)	83, 108, 704, 1309, 1366, 1382
PkrI	GCNGC	8 cut(s)	20, 425, 799, 883, 901, 904, 913, 1207
PleI	GAGTC	4 cut(s)	111, 125, 364, 599
PluTI	GGCGCC	1 cut(s)	77
PpsI	GAGTC	4 cut(s)	111, 125, 364, 599
PshAI	GACNNNNGTC	1 cut(s)	611
PsiI	TTATAA	1 cut(s)	1487
Psp124BI	GAGCTC	2 cut(s)	455, 663
Psp6I	CCWGG	3 cut(s)	472, 518, 954
PspFI	CCCAGC	1 cut(s)	1257
PspGI	CCWGG	3 cut(s)	472, 518, 954
PspN4I	GGNNCC	4 cut(s)	6, 75, 159, 715
PspPI	GGNCC	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	2 cut(s)	226, 1253
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	2 cut(s)	125, 1287
RsaNI	GTAC	2 cut(s)	124, 1286
RseI	CAYNNNNRTG	3 cut(s)	408, 432, 1095
SacI	GAGCTC	2 cut(s)	455, 663
SalI	GTCGAC	1 cut(s)	182
SapI	GCTCTTC	3 cut(s)	651, 1047, 1245
SaqAI	TTAA	6 cut(s)	479, 485, 620, 635, 939, 1028
SatI	GCNGC	8 cut(s)	19, 424, 798, 882, 900, 903, 912, 1206
Sau3AI	GATC	5 cut(s)	60, 226, 532, 1253, 1534
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	4 cut(s)	112, 126, 364, 600
ScrFI	CCNGG	5 cut(s)	39, 40, 474, 520, 956
SduI	GDGCHC	5 cut(s)	9, 39, 455, 663, 718
SexAI	ACCWGGT	1 cut(s)	472
SfaNI	GCATC	6 cut(s)	688, 964, 1036, 1069, 1090, 1503
SfcI	CTRYAG	3 cut(s)	314, 683, 912
SfoI	GGCGCC	1 cut(s)	75
Sfr274I	CTCGAG	1 cut(s)	341
SinI	GGWCC	1 cut(s)	337
SlaI	CTCGAG	1 cut(s)	341
SmaI	CCCGGG	1 cut(s)	40
SmiMI	CAYNNNNRTG	3 cut(s)	408, 432, 1095
SmlI	CTYRAG	3 cut(s)	341, 599, 1574
SmoI	CTYRAG	3 cut(s)	341, 599, 1574
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	8 cut(s)	299, 491, 575, 628, 936, 961, 1343, 1579
SsiI	CCGC	6 cut(s)	18, 52, 56, 98, 882, 1033
SspDI	GGCGCC	1 cut(s)	73
SspMI	CTAG	3 cut(s)	528, 906, 1370
SstI	GAGCTC	2 cut(s)	455, 663
StyD4I	CCNGG	5 cut(s)	37, 38, 472, 518, 954
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	3 cut(s)	216, 687, 1532
TaiI	ACGT	3 cut(s)	71, 1279, 1356
TaqI	TCGA	8 cut(s)	63, 106, 183, 342, 751, 815, 1042, 1112
TaqII	GACCGA	1 cut(s)	1487
TasI	AATT	8 cut(s)	299, 491, 575, 628, 936, 961, 1343, 1579
TatI	WGTACW	1 cut(s)	1285
TauI	GCSGC	2 cut(s)	21, 884
TfiI	GAWTC	6 cut(s)	83, 108, 704, 1309, 1366, 1382
Tru1I	TTAA	6 cut(s)	479, 485, 620, 635, 939, 1028
Tru9I	TTAA	6 cut(s)	479, 485, 620, 635, 939, 1028
TscAI	CASTG	4 cut(s)	193, 1194, 1233, 1509
TseFI	GTSAC	2 cut(s)	1349, 1500
TseI	GCWGC	6 cut(s)	423, 797, 899, 902, 911, 1205
Tsp45I	GTSAC	2 cut(s)	1349, 1500
TspDTI	ATGAA	8 cut(s)	312, 399, 908, 954, 996, 1100, 1395, 1473
TspGWI	ACGGA	1 cut(s)	785
TspMI	CCCGGG	1 cut(s)	38
TspRI	CASTG	4 cut(s)	193, 1194, 1233, 1509
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	3 cut(s)	628, 961, 1579
XceI	RCATGY	1 cut(s)	1094
XhoI	CTCGAG	1 cut(s)	341
XmaI	CCCGGG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	1239
XspI	CTAG	3 cut(s)	528, 906, 1370
Zsp2I	ATGCAT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.