Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015288

Physical Location & Seq

Genomic Coordinates Forward (+)

16091030 .. 16092681

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGCAAGATCTTCGTCATGGCACCGAATGTCAAATTTCATGAGAAAGTATCGAAAAATTCCTCATTCGTCTTTCAAAACCAAATGGAACGAGAATCTCAAGCAGAAGTATGCCATGGAAGAGCTAAGAAGCAACCTTCTCACAGATTCAGAGAATGCTTCTGTTATGCGAACCCTCTTAAGCTCATTCCAACTCCATAACTGTGAGCCCACTCCTCAAGCTTACAGATTCGTTATCAAAACCCTAGCTAAATCCTCTCAGCTTGAGAATATTTCATCTGTTCTTTACCACCTTGAAGTCTCTGAGAAGTTCGATACACCTGAATCCATTTTCAGAGATGTCATCGCTGCTTATGGCTTCTCCGGTAGAATCGAAGAGGCGATTGAGGTTTTCTTCAAAATCCCTAATTTCAGGTGCGTGCCTTCTGCTTACACGCTCAATGCTTTGCTCTTAGTTCTTGTGAGAAAAAGACAGAGTCTTGAATTGGTTCCTGAGATTTTGGTGAAAGCTTGTAGAATGGGTGTTAGGTTAGAGGAATCTACTTTCGGGATATTGATCGATGCGCTTTGTAGAATAGGTGAGGTAGATTGTGCTACTGAGTTAGTGAGATACATGAGTCAGGATAGTGTTATTGTTGATCCAAGATTATACTCTCGGTTACTGAGTTCTGTATGTAAACACAAGGATTCGTCATGTTTCGATGTAATTGGATATTTGGAAGATCTGCGAAAGACTCGGTTTTCGCCAGGTTTGCGGGATTATACAGTTGTGATGAGGTTCTTGGTGGAAGGAGGAAGGGGGAAAGAAGTTGTAAGTGTACTGAATCAGATGAAATGTGACAGAGTAGAGCCTGATCTTGTTTGTTATACAATCGTGTTGCAAGGCGTTATTGCGGATGAGGATTACCCGAAAGCAGACAAGTTGTTTGATGAGTTGCTCTTGTTAGGTTTGGCTCCTGATGTTTATACCTATAATGTGTATATCAATGGGTTATGCAAGCAGAACGATATTGAAGGCGCCTTAAAGATGATGTCTTCAATGAACAAGCTAGGTTCTGAGCCTAATGTAGTTACATACAATATATTGATCAAGGCATTGGTAAAAGCTGGAGATCTGAGTCGAGCTAAGACTCTATGGAAAGAGATGGAGACGAATGGAGTTAACCGGAACAGCCACACATTTGATATTATGATTAGTGCATATATTGAGGTAGACGAGGTTGTTTGTGCTCATGGTTTATTGGAAGAAGCATTTAACATGAACGTGTTCGTTAAGAGTTCGAGAATTGAGGAAGTCATTAGCAGATTATGTGAGAAAGGTTTGATGGATCAAGCAGTCGAACTTTTAGCACACCTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 dsrm

Protein Analysis

453

Amino Acids

51.6

Weight (kDa)

6.3

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	174 - 206	8.6e-08	PPR repeat
PPR_2	PF13041	254 - 295	2.2e-06	PPR repeat family
PPR_long	PF17177	269 - 371	1.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	284 - 333	2.4e-12	PPR repeat family
PPR_3	PF13812	307 - 368	1.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	316 - 347	1.7e-08	PPR repeat
PPR_2	PF13041	319 - 368	8.7e-18	PPR repeat family
PPR_1	PF12854	351 - 383	1.7e-09	PPR repeat
PPR_2	PF13041	354 - 401	1.8e-14	PPR repeat family
PPR	PF01535	357 - 387	8.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38420
fragaria_vesca	FvH4_6g10340
malus_domestica	MD04G1169100.v1.1 MD12G1182800.v1.1
prunus_persica	Prupe.6G287300_v2.0.a1
pyrus_communis	pycom04g14980 pycom12g17160
rosa_laevigata	RLG00000024949
rosa_multiflora	Rmu_sc0001521.1_g000049
rosa_roxburghii	Rroxscaffold_6G00418830
rosa_rugosa	Rorug03G0048500 Rorug03G0048700
rosa_samantha	Rh3BG110100 Rh3CG111600 Rh3DG111700
rosa_wichuraiana	Rw3G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	21, 1016
AccI	GTMKAC	1 cut(s)	1212
AciI	CCGC	2 cut(s)	754, 893
AclWI	GGATC	2 cut(s)	632, 1335
AcsI	RAATTY	2 cut(s)	34, 57
AcyI	GRCGYC	1 cut(s)	1017
AfaI	GTAC	1 cut(s)	819
AflII	CTTAAG	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	1263
AgsI	TTSAA	6 cut(s)	76, 296, 397, 482, 1013, 1038
AjnI	CCWGG	2 cut(s)	745, 1353
AluBI	AGCT	9 cut(s)	124, 183, 221, 248, 262, 509, 1048, 1106, 1124
AluI	AGCT	9 cut(s)	124, 183, 221, 248, 262, 509, 1048, 1106, 1124
Alw21I	GWGCWC	1 cut(s)	1231
Alw26I	GTCTC	2 cut(s)	304, 1142
AlwI	GGATC	2 cut(s)	632, 1335
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	2 cut(s)	34, 57
ArsI	GACNNNNNNTTYG	4 cut(s)	724, 756, 908, 940
Asp700I	GAANNNNTTC	2 cut(s)	486, 1265
AspLEI	GCGC	2 cut(s)	565, 1019
AsuHPI	GGTGA	2 cut(s)	514, 590
BaeI	ACNNNNGTAYC	2 cut(s)	601, 634
BanI	GGYRCC	2 cut(s)	21, 1016
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	1026
Bbv12I	GWGCWC	1 cut(s)	1231
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	1138, 1318
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	747, 1355
BclI	TGATCA	1 cut(s)	1086
BcoDI	GTCTC	2 cut(s)	304, 1142
BfaI	CTAG	2 cut(s)	245, 1049
BfoI	RGCGCY	1 cut(s)	1020
BfrI	CTTAAG	1 cut(s)	178
BglII	AGATCT	3 cut(s)	8, 721, 1111
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	747, 1355
BmiI	GGNNCC	4 cut(s)	23, 489, 954, 1018
BmrFI	CCNGG	2 cut(s)	747, 1355
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	1026
BpmI	CTGGAG	1 cut(s)	1128
BpuEI	CTTGAG	3 cut(s)	83, 201, 284
Bsa29I	ATCGAT	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	554
BsaHI	GRCGYC	1 cut(s)	1017
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	2 cut(s)	362, 1164
Bse8I	GATNNNNATC	1 cut(s)	554
BseBI	CCWGG	2 cut(s)	747, 1355
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	901
BseJI	GATNNNNATC	1 cut(s)	554
BseMII	CTCAG	7 cut(s)	272, 294, 483, 588, 653, 1047, 1106
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	334
BshNI	GGYRCC	2 cut(s)	21, 1016
BshVI	ATCGAT	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	1231
BsiSI	CCGG	2 cut(s)	363, 1165
BsmAI	GTCTC	2 cut(s)	304, 1142
BsmBI	CGTCTC	1 cut(s)	1142
BsmI	GAATGC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	210, 1231
Bsp143I	GATC	8 cut(s)	8, 555, 637, 721, 853, 1086, 1111, 1327
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	2 cut(s)	754, 893
BspCNI	CTCAG	7 cut(s)	271, 295, 484, 589, 654, 1048, 1107
BspDI	ATCGAT	1 cut(s)	558
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	4 cut(s)	23, 489, 954, 1018
BspPI	GGATC	2 cut(s)	632, 1335
BspQI	GCTCTTC	1 cut(s)	114
BspT107I	GGYRCC	2 cut(s)	21, 1016
BspTI	CTTAAG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	8 cut(s)	8, 555, 637, 721, 853, 1086, 1111, 1327
BssNI	GRCGYC	1 cut(s)	1017
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	747, 1355
Bst4CI	ACNGT	2 cut(s)	203, 766
Bst6I	CTCTTC	2 cut(s)	114, 369
BstACI	GRCGYC	1 cut(s)	1017
BstAFI	CTTAAG	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	419, 998
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	901
BstH2I	RGCGCY	1 cut(s)	1020
BstHHI	GCGC	2 cut(s)	565, 1019
BstKTI	GATC	8 cut(s)	11, 558, 640, 724, 856, 1089, 1114, 1330
BstMAI	GTCTC	2 cut(s)	304, 1142
BstMBI	GATC	8 cut(s)	8, 555, 637, 721, 853, 1086, 1111, 1327
BstMWI	GCNNNNNNNGC	1 cut(s)	751
BstNI	CCWGG	2 cut(s)	747, 1355
BstSCI	CCNGG	2 cut(s)	745, 1353
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	1026
BstX2I	RGATCY	3 cut(s)	8, 721, 1111
BstYI	RGATCY	3 cut(s)	8, 721, 1111
Bsu15I	ATCGAT	1 cut(s)	558
BsuTUI	ATCGAT	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	901
Cac8I	GCNNGC	2 cut(s)	419, 998
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	2 cut(s)	565, 1019
ClaI	ATCGAT	1 cut(s)	558
CsiI	ACCWGGT	1 cut(s)	1353
Csp6I	GTAC	1 cut(s)	818
CviAII	CATG	7 cut(s)	18, 40, 115, 613, 693, 1232, 1258
CviQI	GTAC	1 cut(s)	818
DinI	GGCGCC	1 cut(s)	1018
DpnI	GATC	8 cut(s)	10, 557, 639, 723, 855, 1088, 1113, 1329
DpnII	GATC	8 cut(s)	8, 555, 637, 721, 853, 1086, 1111, 1327
Eam1104I	CTCTTC	2 cut(s)	114, 369
EarI	CTCTTC	2 cut(s)	114, 369
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	745, 1353
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	1018
EheI	GGCGCC	1 cut(s)	1018
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	1142
FaeI	CATG	7 cut(s)	21, 43, 118, 616, 696, 1235, 1261
FatI	CATG	7 cut(s)	17, 39, 114, 612, 692, 1231, 1257
FauI	CCCGC	1 cut(s)	747
FbaI	TGATCA	1 cut(s)	1086
FblI	GTMKAC	1 cut(s)	1212
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	1 cut(s)	908
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	2 cut(s)	245, 1049
GlaI	GCGC	2 cut(s)	564, 1018
GluI	GCNGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	1128
HaeII	RGCGCY	1 cut(s)	1020
HapII	CCGG	2 cut(s)	363, 1165
HhaI	GCGC	2 cut(s)	565, 1019
Hin1I	GRCGYC	1 cut(s)	1017
Hin1II	CATG	7 cut(s)	21, 43, 118, 616, 696, 1235, 1261
Hin6I	GCGC	2 cut(s)	563, 1017
HinP1I	GCGC	2 cut(s)	563, 1017
HincII	GTYRAC	1 cut(s)	1162
HindII	GTYRAC	1 cut(s)	1162
HindIII	AAGCTT	2 cut(s)	219, 507
HpaI	GTTAAC	1 cut(s)	1162
HpaII	CCGG	2 cut(s)	363, 1165
HphI	GGTGA	2 cut(s)	514, 590
Hpy166II	GTNNAC	4 cut(s)	677, 818, 1162, 1213
Hpy188I	TCNGA	6 cut(s)	151, 304, 335, 828, 1057, 1116
Hpy188III	TCNNGA	7 cut(s)	40, 479, 491, 547, 620, 956, 1281
Hpy8I	GTNNAC	4 cut(s)	677, 818, 1162, 1213
HpyAV	CCTTC	5 cut(s)	146, 432, 782, 789, 1007
HpyCH4III	ACNGT	2 cut(s)	203, 766
HpyCH4IV	ACGT	1 cut(s)	1263
HpyCH4V	TGCA	3 cut(s)	880, 996, 1199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	751
HpySE526I	ACGT	1 cut(s)	1263
Hsp92I	GRCGYC	1 cut(s)	1017
Hsp92II	CATG	7 cut(s)	21, 43, 118, 616, 696, 1235, 1261
HspAI	GCGC	2 cut(s)	563, 1017
KasI	GGCGCC	1 cut(s)	1016
Ksp22I	TGATCA	1 cut(s)	1086
KspAI	GTTAAC	1 cut(s)	1162
Kzo9I	GATC	8 cut(s)	8, 555, 637, 721, 853, 1086, 1111, 1327
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	958
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	550
MabI	ACCWGGT	1 cut(s)	1353
MaeI	CTAG	2 cut(s)	245, 1049
MaeII	ACGT	1 cut(s)	1263
MaeIII	GTNAC	3 cut(s)	657, 836, 1069
MalI	GATC	8 cut(s)	10, 557, 639, 723, 855, 1088, 1113, 1329
MboI	GATC	8 cut(s)	8, 555, 637, 721, 853, 1086, 1111, 1327
MboII	GAAGA	7 cut(s)	3, 131, 385, 386, 731, 1026, 1256
MflI	RGATCY	3 cut(s)	8, 721, 1111
MhlI	GDGCHC	2 cut(s)	210, 1231
MluCI	AATT	6 cut(s)	34, 57, 406, 482, 705, 1284
Mly113I	GGCGCC	1 cut(s)	1017
MlyI	GAGTC	5 cut(s)	484, 625, 727, 1123, 1126
MmeI	TCCRAC	1 cut(s)	214
MroXI	GAANNNNTTC	2 cut(s)	486, 1265
MseI	TTAA	6 cut(s)	179, 1022, 1161, 1254, 1272, 1360
MslI	CAYNNNNRTG	2 cut(s)	201, 1262
MspCI	CTTAAG	1 cut(s)	178
MspI	CCGG	2 cut(s)	363, 1165
MspR9I	CCNGG	2 cut(s)	747, 1355
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	2 cut(s)	747, 1355
MwoI	GCNNNNNNNGC	1 cut(s)	751
NarI	GGCGCC	1 cut(s)	1017
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	8 cut(s)	8, 555, 637, 721, 853, 1086, 1111, 1327
NlaIII	CATG	7 cut(s)	21, 43, 118, 616, 696, 1235, 1261
NlaIV	GGNNCC	4 cut(s)	23, 489, 954, 1018
NmuCI	GTSAC	1 cut(s)	836
PagI	TCATGA	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	114
PctI	GAATGC	1 cut(s)	160
PdmI	GAANNNNTTC	2 cut(s)	486, 1265
PfeI	GAWTC	8 cut(s)	94, 146, 228, 323, 369, 536, 686, 823
PflFI	GACNNNGTC	1 cut(s)	474
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	5 cut(s)	483, 624, 727, 1123, 1125
PluTI	GGCGCC	1 cut(s)	1020
PpsI	GAGTC	5 cut(s)	483, 624, 727, 1123, 1125
Psp6I	CCWGG	2 cut(s)	745, 1353
PspGI	CCWGG	2 cut(s)	745, 1353
PspN4I	GGNNCC	4 cut(s)	23, 489, 954, 1018
PsuI	RGATCY	3 cut(s)	8, 721, 1111
PsyI	GACNNNGTC	1 cut(s)	474
RsaI	GTAC	1 cut(s)	819
RsaNI	GTAC	1 cut(s)	818
RseI	CAYNNNNRTG	2 cut(s)	201, 1262
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	6 cut(s)	179, 1022, 1161, 1254, 1272, 1360
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	8 cut(s)	8, 555, 637, 721, 853, 1086, 1111, 1327
SchI	GAGTC	5 cut(s)	484, 625, 727, 1123, 1126
ScrFI	CCNGG	2 cut(s)	747, 1355
SduI	GDGCHC	2 cut(s)	210, 1231
SexAI	ACCWGGT	1 cut(s)	1353
SfaNI	GCATC	1 cut(s)	550
SfoI	GGCGCC	1 cut(s)	1018
SmiMI	CAYNNNNRTG	2 cut(s)	201, 1262
SmlI	CTYRAG	4 cut(s)	98, 178, 216, 263
SmoI	CTYRAG	4 cut(s)	98, 178, 216, 263
Sse9I	AATT	6 cut(s)	34, 57, 406, 482, 705, 1284
SsiI	CCGC	2 cut(s)	754, 893
SspDI	GGCGCC	1 cut(s)	1016
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	2 cut(s)	245, 1049
StyD4I	CCNGG	2 cut(s)	745, 1353
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	203, 766
TaiI	ACGT	1 cut(s)	1266
TaqI	TCGA	8 cut(s)	52, 312, 372, 558, 699, 1120, 1280, 1338
TasI	AATT	6 cut(s)	34, 57, 406, 482, 705, 1284
TatI	WGTACW	1 cut(s)	817
TfiI	GAWTC	8 cut(s)	94, 146, 228, 323, 369, 536, 686, 823
Tru1I	TTAA	6 cut(s)	179, 1022, 1161, 1254, 1272, 1360
Tru9I	TTAA	6 cut(s)	179, 1022, 1161, 1254, 1272, 1360
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	5 cut(s)	28, 264, 845, 1055, 1274
Tth111I	GACNNNGTC	1 cut(s)	474
Vha464I	CTTAAG	1 cut(s)	178
XapI	RAATTY	2 cut(s)	34, 57
XmiI	GTMKAC	1 cut(s)	1212
XmnI	GAANNNNTTC	2 cut(s)	486, 1265
XspI	CTAG	2 cut(s)	245, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.