pycom04g14980

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
17812739 .. 17814578
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14980.2

Sequence Viewer

Length: 1641 bp
ATGGTGAGAGCATCTGCACTAAAACCCAGTAGAAAATTCTTCCTGAGAAAGCACAGGAAATGGCCGGTCTCGCCGTACAACACCAGATGGCAACAAATCTTCAACCAAAACCAAGCCTGTGAAAGCCTCAAAAAATCATTGCCGCCGCCCTGCCACCTCCTTCCGACGCTCATTTGCTCCTTTAAAACCTACAACGTCGACCCAACCCCGGAAGCCTACCACTTTGTCCTCAAAACCCTCATCAAAACCTCCCAGTTCGACCACATCGTTCCGGTTCTCTCCCAGCTCGAAAAAGTCGAAAAGTTCGACACGCCGGAGCACATTTTTGCCCATCTAATTGGTTTTTATGGCCGTTGGAGCAGAACCCAGGACGCCATTGATCTGTTTTACAGAATTCCCAAGTTCAGGTGTGTCCCTTCTGCTCACTCTCTCAATGCATTGCTGTATGTGCTTTGTGGGTCCTGTGAAGGTCTTAAATTGGTGCCCGAGATTTTTCTCAGGAGCCACGTAATGGGCATCCGGCTCGAAGAATCGAGTTTTCGGATTTTGGTCAATGCATTGTGTGGAATTGGGAAGGTTGGATATGCTATTGAGATTATGAATTGTATGATGAATAATGGGTATGGTTTGAATGTGAAGATTTGCGCTTTGATATTGTCATCATTGTGTGAACAAAGGGATTCAGAGTGTGTTGTTGTTATGGGGTTTTTGGGAGAAATGCAGATACTTGGGCAGAATAGAGTTGAATCGGGATTGATGATGATTTCTTCTATGGAAGAGTTGGGGCGCAAGCCTAATTTGATTACTTATAACATCTTGCTGAAGGCACTGTGTAACAGTGGGGAGCTTAGGAGGGCTAGAAATCTTATGCGTGAGATGACGTTAAATGGTGTTGGGGTAAACTTGGAAGAAATGTTAGATAAGGTTCTTGTTTGTTTTTGTTCCTCATTCGATGTGGTGATTTATGGGTTGTGCCAAAGGGGTTTGGTTTGTAAAGCAACGGAATTGCTGAAGAAAATGGTTGCCAAGAAAGTTGTTCCCGGAGCAAAGGCTTGGGAAGCACTGCTCCTTAGCTCAGGATCTGAACCCAGCTTAGAAGAGACTACTTGGGCGGGTTTGGTGGAGCCAATAGTAGTCCCTTGGCGTAGCAAAACTGTAAGAGTGAAAAAGATGCAAGGGAAAAAACAGAGTAGACAAATCCCATCGTCAAAAGGCATTGTCTATCATGGATTGTGCAATCAGAACAATATGGAGGCAGGATTAAACATGATTTCGTGTCTGGAGAGCTGGGGGTGCAAGCCTAATTCGTTTACTTATAACATCTTGGGAGTTAGGGTTATGTTGGATGGCCTATTGGGCAAAGGAGACGTTGATGAAGCTTTTGTCTTTGTGGAAGCAATGTTAAATAAGGTTCTCATTCGTTTTTGTTCCTCATTCAGTGAGGTAATTTACGGGTTGTGGCAAAGGGGTTTGGTTTGTAAAGCAATGGAATTGCTGAAGAGAATGGTTGACAAGAACGTTGCTCCCAGAGAAAAGGCTCGGGAAGCACTGCTTCTTAGGTCAGGATCCAAACCCGATTTGAAAGAGACTACTTGGACTGGTTTGGTGGTGCCAATTATAGCACAAACAGAGGACCAGTAA

Protein Analysis

547

Amino Acids

61.52

Weight (kDa)

9.12

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38420
fragaria_vesca FvH4_6g10340
malus_domestica MD04G1169100.v1.1 MD12G1182800.v1.1
prunus_persica Prupe.6G287300_v2.0.a1
pyrus_communis pycom04g14980 pycom12g17160
rosa_laevigata RLG00000024949
rosa_multiflora Rmu_sc0001521.1_g000049
rosa_roxburghii Rroxscaffold_6G00418830
rosa_rugosa Rorug03G0048500 Rorug03G0048700
rosa_samantha Rh3BG110100 Rh3CG111600 Rh3DG111700
rosa_wichuraiana Rw3G009060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 810, 1317
AccB1I GGYRCC 2 cut(s) 481, 1609
AccB7I CCANNNNNTGG 1 cut(s) 511
AccI GTMKAC 2 cut(s) 198, 1192
AciI CCGC 3 cut(s) 143, 146, 1112
AclI AACGTT 1 cut(s) 1518
AclWI GGATC 3 cut(s) 1087, 1560, 1573
AcoI YGGCCR 2 cut(s) 62, 349
AcsI RAATTY 2 cut(s) 35, 393
AcuI CTGAAG 3 cut(s) 842, 1031, 1517
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 3 cut(s) 208, 405, 511
AgsI TTSAA 4 cut(s) 103, 631, 746, 1582
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 6 cut(s) 286, 847, 1074, 1092, 1287, 1379
AluI AGCT 6 cut(s) 286, 847, 1074, 1092, 1287, 1379
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 4 cut(s) 73, 1094, 1359, 1580
AlwI GGATC 3 cut(s) 1087, 1560, 1573
AlwNI CAGNNNCTG 1 cut(s) 1082
Ama87I CYCGRG 2 cut(s) 485, 1539
AoxI GGCC 3 cut(s) 62, 349, 1348
ApoI RAATTY 2 cut(s) 35, 393
AspLEI GCGC 2 cut(s) 647, 789
AspS9I GGNCC 2 cut(s) 459, 1633
AsuC2I CCSGG 2 cut(s) 209, 1041
AsuHPI GGTGA 2 cut(s) 16, 970
AvaI CYCGRG 2 cut(s) 485, 1539
AvaII GGWCC 2 cut(s) 459, 1633
BaeGI GKGCMC 1 cut(s) 486
BamHI GGATCC 1 cut(s) 1565
BanI GGYRCC 2 cut(s) 481, 1609
Bbv12I GWGCWC 1 cut(s) 321
BccI CCATC 4 cut(s) 81, 339, 1210, 1340
BceAI ACGGC 2 cut(s) 58, 336
BcgI CGANNNNNNTGC 2 cut(s) 505, 539
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 2 cut(s) 209, 1041
BcoDI GTCTC 4 cut(s) 73, 1094, 1359, 1580
BfaI CTAG 1 cut(s) 858
BglI GCCNNNNNGGC 1 cut(s) 1356
BisI GCNGC 2 cut(s) 143, 146
BlsI GCNGC 2 cut(s) 144, 147
Bme1390I CCNGG 3 cut(s) 209, 368, 1041
Bme18I GGWCC 2 cut(s) 459, 1633
BmeT110I CYCGRG 2 cut(s) 485, 1539
BmgT120I GGNCC 2 cut(s) 459, 1633
BmiI GGNNCC 6 cut(s) 460, 483, 503, 1125, 1567, 1611
BmrFI CCNGG 3 cut(s) 209, 368, 1041
BmrI ACTGGG 2 cut(s) 21, 247
BmsI GCATC 3 cut(s) 20, 525, 1161
BmuI ACTGGG 2 cut(s) 21, 247
BpmI CTGGAG 1 cut(s) 1301
Bpu10I CCTNAGC 3 cut(s) 848, 1070, 1075
BpuMI CCSGG 2 cut(s) 209, 1041
BsaAI YACGTR 1 cut(s) 508
BsaHI GRCGYC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 207, 366, 1139
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 1320, 1350
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 405, 511
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 4 cut(s) 27, 253, 1603, 1636
Bse3DI GCAATG 4 cut(s) 137, 437, 1404, 1491
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 3 cut(s) 207, 366, 1139
BseGI GGATG 2 cut(s) 516, 1351
BseLI CCNNNNNNNGG 3 cut(s) 208, 405, 511
BseMI GCAATG 4 cut(s) 137, 437, 1404, 1491
BseMII CTCAG 3 cut(s) 35, 511, 1089
BseNI ACTGG 4 cut(s) 27, 253, 1603, 1636
BseSI GKGCMC 1 cut(s) 486
BseYI CCCAGC 3 cut(s) 282, 1088, 1287
BshFI GGCC 3 cut(s) 64, 351, 1350
BshNI GGYRCC 2 cut(s) 481, 1609
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 2 cut(s) 485, 1539
BsiSI CCGG 6 cut(s) 65, 209, 272, 314, 520, 1041
BslFI GGGAC 2 cut(s) 398, 1121
BslI CCNNNNNNNGG 3 cut(s) 208, 405, 511
BsmAI GTCTC 4 cut(s) 73, 1094, 1359, 1580
BsmBI CGTCTC 1 cut(s) 1359
BsmFI GGGAC 2 cut(s) 398, 1121
BsnI GGCC 3 cut(s) 64, 351, 1350
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 2 cut(s) 485, 1539
Bsp1286I GDGCHC 2 cut(s) 321, 486
Bsp143I GATC 3 cut(s) 379, 1079, 1565
BspACI CCGC 3 cut(s) 143, 146, 1112
BspANI GGCC 3 cut(s) 64, 351, 1350
BspCNI CTCAG 3 cut(s) 36, 510, 1088
BspLI GGNNCC 6 cut(s) 460, 483, 503, 1125, 1567, 1611
BspPI GGATC 3 cut(s) 1087, 1560, 1573
BspT107I GGYRCC 2 cut(s) 481, 1609
BspTNI GGTCTC 1 cut(s) 73
BsrDI GCAATG 4 cut(s) 137, 437, 1404, 1491
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 4 cut(s) 27, 253, 1603, 1636
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 207, 366, 1139
BssMI GATC 3 cut(s) 379, 1079, 1565
BssNI GRCGYC 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 1139
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 831, 839, 1156
Bst6I CTCTTC 3 cut(s) 771, 1092, 1493
BstACI GRCGYC 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 508
BstC8I GCNNGC 2 cut(s) 791, 1298
BstDEI CTNAG 7 cut(s) 44, 497, 848, 1070, 1075, 1093, 1556
BstF5I GGATG 2 cut(s) 516, 1351
BstHHI GCGC 2 cut(s) 647, 789
BstKTI GATC 3 cut(s) 382, 1082, 1568
BstMAI GTCTC 4 cut(s) 73, 1094, 1359, 1580
BstMBI GATC 3 cut(s) 379, 1079, 1565
BstMWI GCNNNNNNNGC 7 cut(s) 70, 357, 448, 1058, 1293, 1356, 1544
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 3 cut(s) 207, 366, 1039
BstSLI GKGCMC 1 cut(s) 486
BstX2I RGATCY 2 cut(s) 1079, 1565
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 2 cut(s) 1079, 1565
BsuRI GGCC 3 cut(s) 64, 351, 1350
BtsCI GGATG 2 cut(s) 516, 1351
BtsI GCAGTG 2 cut(s) 1061, 1547
BtsIMutI CAGTG 5 cut(s) 827, 844, 1061, 1444, 1547
Cac8I GCNNGC 2 cut(s) 791, 1298
CaiI CAGNNNCTG 1 cut(s) 1082
CfoI GCGC 2 cut(s) 647, 789
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 459, 1633
CseI GACGC 2 cut(s) 175, 380
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 1226, 1267
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 7 cut(s) 44, 497, 848, 1070, 1075, 1093, 1556
DpnI GATC 3 cut(s) 381, 1081, 1567
DpnII GATC 3 cut(s) 379, 1079, 1565
DraI TTTAAA 1 cut(s) 184
EaeI YGGCCR 2 cut(s) 62, 349
Eam1104I CTCTTC 3 cut(s) 771, 1092, 1493
EarI CTCTTC 3 cut(s) 771, 1092, 1493
Eco130I CCWWGG 1 cut(s) 1139
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 459, 1633
Eco57I CTGAAG 3 cut(s) 842, 1031, 1517
Eco88I CYCGRG 2 cut(s) 485, 1539
EcoO109I RGGNCCY 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 1139
EcoT22I ATGCAT 2 cut(s) 439, 559
ErhI CCWWGG 1 cut(s) 1139
Esp3I CGTCTC 1 cut(s) 1359
FaeI CATG 2 cut(s) 1229, 1270
FalI AAGNNNNNCTT 2 cut(s) 1536, 1568
FaqI GGGAC 2 cut(s) 398, 1121
FatI CATG 2 cut(s) 1225, 1266
FauI CCCGC 1 cut(s) 1105
FblI GTMKAC 2 cut(s) 198, 1192
Fnu4HI GCNGC 2 cut(s) 143, 146
FokI GGATG 2 cut(s) 503, 1358
Fsp4HI GCNGC 2 cut(s) 143, 146
FspBI CTAG 1 cut(s) 858
GlaI GCGC 2 cut(s) 646, 788
GluI GCNGC 2 cut(s) 143, 146
GsaI CCCAGC 3 cut(s) 286, 1092, 1291
GsuI CTGGAG 1 cut(s) 1301
HaeIII GGCC 3 cut(s) 64, 351, 1350
HapII CCGG 6 cut(s) 65, 209, 272, 314, 520, 1041
HgaI GACGC 2 cut(s) 175, 380
HhaI GCGC 2 cut(s) 647, 789
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 2 cut(s) 1229, 1270
Hin6I GCGC 2 cut(s) 645, 787
HinP1I GCGC 2 cut(s) 645, 787
HincII GTYRAC 2 cut(s) 199, 1510
HindII GTYRAC 2 cut(s) 199, 1510
HindIII AAGCTT 1 cut(s) 1377
HinfI GANTC 3 cut(s) 530, 680, 746
HpaII CCGG 6 cut(s) 65, 209, 272, 314, 520, 1041
HphI GGTGA 2 cut(s) 16, 970
Hpy166II GTNNAC 6 cut(s) 199, 671, 901, 1193, 1311, 1510
Hpy188I TCNGA 5 cut(s) 165, 543, 685, 1084, 1242
Hpy188III TCNNGA 7 cut(s) 43, 499, 750, 1077, 1280, 1541, 1563
Hpy8I GTNNAC 6 cut(s) 199, 671, 901, 1193, 1311, 1510
Hpy99I CGWCG 2 cut(s) 169, 200
HpyAV CCTTC 5 cut(s) 170, 426, 461, 568, 817
HpyCH4III ACNGT 3 cut(s) 831, 839, 1156
HpyCH4IV ACGT 5 cut(s) 195, 507, 881, 1368, 1518
HpyCH4V TGCA 7 cut(s) 17, 437, 557, 721, 1174, 1236, 1296
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 357, 448, 1058, 1293, 1356, 1544
HpyF3I CTNAG 7 cut(s) 44, 497, 848, 1070, 1075, 1093, 1556
HpySE526I ACGT 5 cut(s) 195, 507, 881, 1368, 1518
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 2 cut(s) 1229, 1270
HspAI GCGC 2 cut(s) 645, 787
Kzo9I GATC 3 cut(s) 379, 1079, 1565
LmnI GCTCC 9 cut(s) 182, 316, 357, 501, 844, 1043, 1071, 1123, 1528
LweI GCATC 3 cut(s) 20, 525, 1161
MaeI CTAG 1 cut(s) 858
MaeII ACGT 5 cut(s) 195, 507, 881, 1368, 1518
MaeIII GTNAC 1 cut(s) 833
MalI GATC 3 cut(s) 381, 1081, 1567
MboI GATC 3 cut(s) 379, 1079, 1565
MflI RGATCY 2 cut(s) 1079, 1565
MhlI GDGCHC 2 cut(s) 321, 486
MmeI TCCRAC 4 cut(s) 188, 335, 559, 1323
Mph1103I ATGCAT 2 cut(s) 439, 559
MseI TTAA 5 cut(s) 183, 474, 884, 1262, 1403
MslI CAYNNNNRTG 1 cut(s) 664
MspI CCGG 6 cut(s) 65, 209, 272, 314, 520, 1041
MspR9I CCNGG 3 cut(s) 209, 368, 1041
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 7 cut(s) 70, 357, 448, 1058, 1293, 1356, 1544
NciI CCSGG 2 cut(s) 209, 1041
NdeII GATC 3 cut(s) 379, 1079, 1565
NlaIII CATG 2 cut(s) 1229, 1270
NlaIV GGNNCC 6 cut(s) 460, 483, 503, 1125, 1567, 1611
NsiI ATGCAT 2 cut(s) 439, 559
PcsI WCGNNNNNNNCGW 3 cut(s) 264, 294, 303
PfeI GAWTC 3 cut(s) 530, 680, 746
PflMI CCANNNNNTGG 1 cut(s) 511
PfoI TCCNGGA 1 cut(s) 1039
PkrI GCNGC 2 cut(s) 144, 147
Ppu21I YACGTR 1 cut(s) 508
PpuMI RGGWCCY 1 cut(s) 459
PsiI TTATAA 2 cut(s) 810, 1317
Psp1406I AACGTT 1 cut(s) 1518
Psp5II RGGWCCY 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 366
PspFI CCCAGC 3 cut(s) 282, 1088, 1287
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 6 cut(s) 460, 483, 503, 1125, 1567, 1611
PspPI GGNCC 2 cut(s) 459, 1633
PspPPI RGGWCCY 1 cut(s) 459
PstNI CAGNNNCTG 1 cut(s) 1082
PsuI RGATCY 2 cut(s) 1079, 1565
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 664
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 5 cut(s) 183, 474, 884, 1262, 1403
SatI GCNGC 2 cut(s) 143, 146
Sau3AI GATC 3 cut(s) 379, 1079, 1565
Sau96I GGNCC 2 cut(s) 459, 1633
ScrFI CCNGG 3 cut(s) 209, 368, 1041
SduI GDGCHC 2 cut(s) 321, 486
SfaNI GCATC 3 cut(s) 20, 525, 1161
SinI GGWCC 2 cut(s) 459, 1633
SmiMI CAYNNNNRTG 1 cut(s) 664
SsiI CCGC 3 cut(s) 143, 146, 1112
SspMI CTAG 1 cut(s) 858
StyD4I CCNGG 3 cut(s) 207, 366, 1039
StyI CCWWGG 1 cut(s) 1139
TaaI ACNGT 3 cut(s) 831, 839, 1156
TaiI ACGT 5 cut(s) 198, 510, 884, 1371, 1521
TaqI TCGA 8 cut(s) 198, 258, 288, 297, 306, 525, 533, 951
TauI GCSGC 2 cut(s) 145, 148
TfiI GAWTC 3 cut(s) 530, 680, 746
Tru1I TTAA 5 cut(s) 183, 474, 884, 1262, 1403
Tru9I TTAA 5 cut(s) 183, 474, 884, 1262, 1403
TscAI CASTG 5 cut(s) 834, 844, 1068, 1444, 1554
TspDTI ATGAA 3 cut(s) 614, 626, 1389
TspGWI ACGGA 1 cut(s) 1016
TspRI CASTG 5 cut(s) 834, 844, 1068, 1444, 1554
Van91I CCANNNNNTGG 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 459, 1633
XapI RAATTY 2 cut(s) 35, 393
XmiI GTMKAC 2 cut(s) 198, 1192
XspI CTAG 1 cut(s) 858
Zsp2I ATGCAT 2 cut(s) 439, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.