Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000494

Physical Location & Seq

Genomic Coordinates Reverse (-)

3791876 .. 3798823

Gene Structure 6948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0048700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGAAGAAGAACCTTTACAACGGCAACAACACGAAAGTTCAGACTAATCATCATCATCATCATCATCGTCATCACAGCAATAATGGCTTCCTTCCTAATTCTCTGAAATTCATTTCCTCTTGCATTAAGACCGCCTCCTCCGGCGTCCGGTCGGCCAGCGCCTCCGTCGCCGCTTCCATCTCCGCTGACCCGCACGAGTCCCGAGACCAGGTGTTGTGGGCATGCTTTGACAGACTAGATCTTGGTCCATCTTCCTTCAAACATGTTCTGCTACTTGGTTATGTCAATGGCTTTCAAGTCCTTGATGTTGAAGATGCCTCTGATGTCAGTGAGCTTGTATCAAAACGTGATGATCCAGTCACATTTTTACAGATCCTGCCCCTGCCTAGAATCTCTCAAGGTCCTGAAGGATTCAGATCTTCGCATCCATTACTCATGGTTGTTGCATGTGAAGAATCAAAGAACTCTGGTATGACACAAAATGGAAGAGATGGTTTGGTAAATGGTTATACTGAGCCTCAAACAAGCAACTCTGCTATGTCTCCTAGAGTTGTTCGGTTTTATTCACTAAGGTCTCACAGTTATGTTCATGTTCTGAGATTCCGCTCGACTGTGTATATGGTTAGATGCAGTCCTCAGATAGTGGCTGTTGGTCTTGCCTCTCAAATATACTGCTTTGATGCTGTCACTCTAGAGAACAAGTTCAGTGTTCTTACTTATCCTGTCCCCCAGTTGGGAGTCCAAGGACTGGTTGGGGTTAATATTGGATATGGTCCCATGGCTGTTGGTCCCAGGTGGTTGGCTTATGCCTCCAACAACCCTTTACTGTCAAACACTTGCCGACTAAGCCCGCAAAGTCTTACACCTCCAGGTGTCAGTCCATCAACTTCACCAAGTAATGGAAATCTGGTGGCTCGGTATGCCATGGAATCTAGTAAGCAGTTAGCTGCTGGGTTGCTAAATCTGGGAGACATGGGCTACAAAACTTTGTCTAAGTACTATCAACCAGATGGTTCCAGCTCTCCAGTGTCATCAAATTCTATCTGGAAAGTTGGGAAGGTTGGATCACATTCAACAGAAACAGATATTGCTGGAATGGTTGTTGTAAAAGACATTGTTTCCAGGGCGGTCGTTTCACAATTTAGGGCACATACTAGTCCCATTTCTGCTCTATGTTTTGACCCAAGTGGGACTCTCCTTGTTACTGCCTCGATACATGGAAACAATATTAACATTTTTCGGATAATGCCATCACGTATTGGATCTGGCACCCAGAACTATGACTTGAATTCCTCTCATGTGCACCTTTACAAGCTCCATCGTGGCATGACATCAGCTGTAATCCAAGACATATGTTTTAGTCAATACAGTCAATGGATTACAATTGTTTCATCGAGGGGGACTTGCCATATTTTTACTCTTTCCCCCTTTGGTGGTGATACTACTCACAAGCAGAGTTCTCATGTTGATGGGCCTAGTCATTTGCCAGTTCCGTCTGTACCGTGGTGGTTCACTCCTTATTTCCTGACAAACCAGCAACTTTTTTCTCCACCACCACCCCCTGTTACCCTTTCTGTGGTTAGCAGAATAAAAGATAACTCCGGGTGGATCAAGACAGTTAGTCATGCTGCGTCTTCTGCAGCCGGAAAAGCTTCCATTCCATCTGGCGCTGTTACTGCTGTATTTCATAATTCTGTTGCTCATGATCTGCAAACTTCTCATTTAAAGGTAACTGCTCTGGAGCACCTATTGGTTTACACTCCTTCTGGTCATGCAGTACAGTTTAAACTACTTCCAAGAGTTGGGATAGAGCCTGGTGAAGCTACATCAAGAACAGTGCCAGGCTCTTCAGTACAAATACAGGATGAGGAGTTGCGAGTGAAAGTTGAACCTCTGCAGTGGTGGGATGTTTGCCGAAGAACTGATTGGCCTGAAAGAGAGGAATGCATTTCTGGGATTAAACTTGGGAGACAAGAAGATGAGGAGACAGTCATGGATACTTTTGATTGTGATGTTAATGATATTGGGGATGAGGAGTCGGTGAAACCACTTGAGCGATCTCACTTGTATCTCGCCAACGCTGAGGTTCAGATTAACTGTGGAAGGATTCCAATCTGGCAAAAGTCTAAGATATATTTCTATACAATGAGTACTCCGGGAGCCATTGAACAAAATTTTACTAAAGATCTTACTGGAGGAGAGATTGAAATAGAAAAGGTTCCTGTTCACGAGGTTGAAATTAGGCGGAAGGATTTGCTACCTGTTTCTGATCAATTCCAAAGAGTGCAGTCTAATTGGAGTGACAGGGATCTTATTGGAAGAGGATTCTCAAGTTCATCTTCTGATTCTCATGAAGCTAAAGAAAAATTTCTGGAAAATGTTGATATTTCTGGTGACAAGTTGGCATCAACTGGCAACCCAGATGCCGGTGGTTCTTATCCATCCATTCTCCAATCTGGGAATGGAAATAATGGGGAAACAAGAGGGAGATCTTTTTTGGCGTCACCTCTACTGAACCAAAGCTCCATAAAGAATAATATTGTTACAATACCTTCAAAACAACCGACTTCAGGTGTTTCTCTGGTTAAGGATAGTAATTTTTTAAAGAGTCAATCCACTTTAACAGGTGGTTCCCTTGCTGCTGATGGAACTATTGCACAAGAGGTTCATTTGGTGAACAGTGGTGGGGCCAATGAAAGTTCAAATTTTTTCCAAGAGGGGTATTGTAAAGCATCACCTTTGAGCAACTTTCCTGAATCAACTGAAGTTGTAACTGATGTGGACAGTAGCAACAGCCCCTGTGATAGGGAGAAATGCGAGGAAGATGGTGACGATGATGACATGCTTGGCGGTGTATTTGACTTCTCCGAGGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 dsrm

Protein Analysis

959

Amino Acids

104.44

Weight (kDa)

6.04

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCAS3_WD40	PF21034	89 - 482	1e-36	BCAS3, WD40 repeat
BCAS3	PF12490	618 - 755	2.8e-47	BCAS3 microtubule associated cell migration factor, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca	FvH4_3g05910 FvH4_3g23320
malus_domestica	MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica	Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis	pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis	RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata	RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora	Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa	Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha	Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana	Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1268
AccB7I	CCANNNNNTGG	3 cut(s)	748, 899, 1802
AccBSI	CCGCTC	1 cut(s)	606
AciI	CCGC	9 cut(s)	132, 171, 183, 191, 604, 851, 1127, 2245, 2850
AclWI	GGATC	6 cut(s)	347, 367, 1072, 1270, 1616, 2316
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	6 cut(s)	107, 1036, 1288, 2173, 2366, 2704
AcuI	CTGAAG	4 cut(s)	426, 1833, 2553, 2784
AcyI	GRCGYC	2 cut(s)	144, 2501
AfaI	GTAC	5 cut(s)	998, 1500, 1779, 1854, 2152
AflIII	ACRYGT	1 cut(s)	262
AhdI	GACNNNNNGTC	1 cut(s)	1620
AhlI	ACTAGT	1 cut(s)	1154
AjnI	CCWGG	6 cut(s)	207, 791, 868, 1121, 1813, 1840
AjuI	GAANNNNNNNTTGG	2 cut(s)	1909, 1941
AloI	GAACNNNNNNTCC	2 cut(s)	2507, 2539
AluBI	AGCT	9 cut(s)	334, 947, 1020, 1315, 1337, 1652, 1823, 2357, 2523
AluI	AGCT	9 cut(s)	334, 947, 1020, 1315, 1337, 1652, 1823, 2357, 2523
Alw21I	GWGCWC	2 cut(s)	1305, 1746
Alw26I	GTCTC	6 cut(s)	198, 546, 579, 963, 1963, 1979
Alw44I	GTGCAC	1 cut(s)	1301
AlwI	GGATC	6 cut(s)	347, 367, 1072, 1270, 1616, 2316
AlwNI	CAGNNNCTG	2 cut(s)	376, 2799
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	4 cut(s)	153, 1472, 1928, 2688
ApaLI	GTGCAC	1 cut(s)	1301
ApeKI	GCWGC	4 cut(s)	947, 1628, 1640, 2639
ApoI	RAATTY	6 cut(s)	107, 1036, 1288, 2173, 2366, 2704
Asp700I	GAANNNNTTC	4 cut(s)	701, 1651, 2217, 2367
AspLEI	GCGC	2 cut(s)	161, 1670
AspS9I	GGNCC	6 cut(s)	245, 401, 773, 788, 1472, 2688
AsuC2I	CCSGG	2 cut(s)	1603, 2157
AsuHPI	GGTGA	9 cut(s)	882, 1448, 1829, 2053, 2405, 2496, 2686, 2727, 2840
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	4 cut(s)	245, 401, 773, 788
BaeGI	GKGCMC	2 cut(s)	1150, 1305
BanI	GGYRCC	1 cut(s)	1268
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BauI	CACGAG	2 cut(s)	194, 2228
BbsI	GAAGAC	1 cut(s)	1626
Bbv12I	GWGCWC	2 cut(s)	1305, 1746
BbvCI	CCTCAGC	1 cut(s)	2082
BbvI	GCAGC	4 cut(s)	934, 1615, 1652, 2626
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	6 cut(s)	209, 793, 870, 1123, 1815, 1842
BciVI	GTATCC	1 cut(s)	1990
BclI	TGATCA	1 cut(s)	2269
BcnI	CCSGG	2 cut(s)	1603, 2157
BcoDI	GTCTC	6 cut(s)	198, 546, 579, 963, 1963, 1979
BcuI	ACTAGT	1 cut(s)	1154
BfaI	CTAG	7 cut(s)	236, 387, 546, 692, 933, 1155, 1476
BfmI	CTRYAG	2 cut(s)	1638, 1895
BfoI	RGCGCY	2 cut(s)	162, 1671
BfuI	GTATCC	1 cut(s)	1990
BglII	AGATCT	4 cut(s)	238, 416, 2185, 2489
BisI	GCNGC	5 cut(s)	171, 948, 1629, 1641, 2640
BlsI	GCNGC	5 cut(s)	172, 949, 1630, 1642, 2641
BmcAI	AGTACT	2 cut(s)	998, 2152
Bme1390I	CCNGG	8 cut(s)	209, 793, 870, 1123, 1603, 1815, 1842, 2157
Bme18I	GGWCC	4 cut(s)	245, 401, 773, 788
BmeRI	GACNNNNNGTC	1 cut(s)	1620
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	6 cut(s)	245, 401, 773, 788, 1472, 2688
BmiI	GGNNCC	8 cut(s)	775, 790, 1015, 1270, 2161, 2220, 2632, 2689
BmrFI	CCNGG	8 cut(s)	209, 793, 870, 1123, 1603, 1815, 1842, 2157
BmrI	ACTGGG	1 cut(s)	724
BmsI	GCATC	7 cut(s)	304, 433, 617, 670, 2413, 2414, 2741
BmuI	ACTGGG	1 cut(s)	724
BpiI	GAAGAC	1 cut(s)	1626
BpmI	CTGGAG	4 cut(s)	852, 1008, 1760, 2214
Bpu10I	CCTNAGC	1 cut(s)	2082
BpuEI	CTTGAG	3 cut(s)	381, 2072, 2314
BpuMI	CCSGG	2 cut(s)	1603, 2157
BsaAI	YACGTR	1 cut(s)	1256
BsaBI	GATNNNNATC	2 cut(s)	415, 2111
BsaHI	GRCGYC	2 cut(s)	144, 2501
BsaI	GGTCTC	2 cut(s)	198, 579
BsaJI	CCNNGG	7 cut(s)	742, 777, 791, 924, 1122, 1502, 2868
BsaWI	WCCGGW	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	2507, 2537
Bse118I	RCCGGY	1 cut(s)	2426
Bse1I	ACTGG	7 cut(s)	356, 730, 753, 1025, 1487, 2197, 2416
Bse8I	GATNNNNATC	2 cut(s)	415, 2111
BseBI	CCWGG	6 cut(s)	209, 793, 870, 1123, 1815, 1842
BseDI	CCNNGG	7 cut(s)	742, 777, 791, 924, 1122, 1502, 2868
BseGI	GGATG	5 cut(s)	424, 1870, 1912, 2035, 2441
BseJI	GATNNNNATC	2 cut(s)	415, 2111
BseMII	CTCAG	4 cut(s)	504, 587, 650, 2073
BseNI	ACTGG	7 cut(s)	356, 730, 753, 1025, 1487, 2197, 2416
BseRI	GAGGAG	5 cut(s)	127, 1883, 1997, 2048, 2211
BseSI	GKGCMC	2 cut(s)	1150, 1305
BseXI	GCAGC	4 cut(s)	934, 1615, 1652, 2626
BseYI	CCCAGC	1 cut(s)	950
BsgI	GTGCAG	1 cut(s)	2306
Bsh1285I	CGRYCG	2 cut(s)	152, 1131
BshFI	GGCC	4 cut(s)	155, 1474, 1930, 2690
BshNI	GGYRCC	1 cut(s)	1268
BsiEI	CGRYCG	2 cut(s)	152, 1131
BsiHKAI	GWGCWC	2 cut(s)	1305, 1746
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	6 cut(s)	141, 148, 1602, 1644, 2156, 2427
BslFI	GGGAC	7 cut(s)	184, 710, 759, 774, 1143, 1204, 1414
BsmAI	GTCTC	6 cut(s)	198, 546, 579, 963, 1963, 1979
BsmFI	GGGAC	7 cut(s)	184, 710, 759, 774, 1143, 1204, 1414
BsmI	GAATGC	1 cut(s)	1949
BsnI	GGCC	4 cut(s)	155, 1474, 1930, 2690
Bso31I	GGTCTC	2 cut(s)	198, 579
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	1150, 1305, 1746
Bsp19I	CCATGG	2 cut(s)	777, 924
BspACI	CCGC	9 cut(s)	132, 171, 183, 191, 604, 851, 1127, 2245, 2850
BspANI	GGCC	4 cut(s)	155, 1474, 1930, 2690
BspCNI	CTCAG	4 cut(s)	505, 588, 649, 2074
BspHI	TCATGA	2 cut(s)	1702, 2350
BspLI	GGNNCC	8 cut(s)	775, 790, 1015, 1270, 2161, 2220, 2632, 2689
BspMAI	CTGCAG	2 cut(s)	1642, 1899
BspPI	GGATC	6 cut(s)	347, 367, 1072, 1270, 1616, 2316
BspQI	GCTCTTC	1 cut(s)	1852
BspT107I	GGYRCC	1 cut(s)	1268
BspTNI	GGTCTC	2 cut(s)	198, 579
BsrBI	CCGCTC	1 cut(s)	606
BsrFI	RCCGGY	1 cut(s)	2426
BsrI	ACTGG	7 cut(s)	356, 730, 753, 1025, 1487, 2197, 2416
BssAI	RCCGGY	1 cut(s)	2426
BssECI	CCNNGG	7 cut(s)	742, 777, 791, 924, 1122, 1502, 2868
BssNI	GRCGYC	2 cut(s)	144, 2501
BssSI	CACGAG	2 cut(s)	194, 2228
BssT1I	CCWWGG	3 cut(s)	742, 777, 924
Bst2BI	CACGAG	2 cut(s)	194, 2228
Bst2UI	CCWGG	6 cut(s)	209, 793, 870, 1123, 1815, 1842
Bst6I	CTCTTC	3 cut(s)	481, 1852, 2314
BstACI	GRCGYC	2 cut(s)	144, 2501
BstBAI	YACGTR	1 cut(s)	1256
BstC8I	GCNNGC	3 cut(s)	157, 223, 851
BstDEI	CTNAG	8 cut(s)	513, 569, 596, 636, 845, 993, 2082, 2127
BstDSI	CCRYGG	3 cut(s)	777, 924, 1502
BstENI	CCTNNNNNAGG	1 cut(s)	2803
BstF5I	GGATG	5 cut(s)	424, 1870, 1912, 2035, 2441
BstH2I	RGCGCY	2 cut(s)	162, 1671
BstHHI	GCGC	2 cut(s)	161, 1670
BstMAI	GTCTC	6 cut(s)	198, 546, 579, 963, 1963, 1979
BstMCI	CGRYCG	2 cut(s)	152, 1131
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 167, 846, 920, 1637, 1649, 1676
BstNI	CCWGG	6 cut(s)	209, 793, 870, 1123, 1815, 1842
BstNSI	RCATGY	4 cut(s)	225, 266, 450, 2845
BstSCI	CCNGG	8 cut(s)	207, 791, 868, 1121, 1601, 1813, 1840, 2155
BstSFI	CTRYAG	2 cut(s)	1638, 1895
BstSLI	GKGCMC	2 cut(s)	1150, 1305
BstV1I	GCAGC	4 cut(s)	934, 1615, 1652, 2626
BstV2I	GAAGAC	1 cut(s)	1626
BstX2I	RGATCY	7 cut(s)	238, 372, 416, 1262, 2185, 2308, 2489
BstXI	CCANNNNNNTGG	1 cut(s)	799
BstYI	RGATCY	7 cut(s)	238, 372, 416, 1262, 2185, 2308, 2489
BsuI	GTATCC	1 cut(s)	1990
BsuRI	GGCC	4 cut(s)	155, 1474, 1930, 2690
BtgI	CCRYGG	3 cut(s)	777, 924, 1502
BtsCI	GGATG	5 cut(s)	424, 1870, 1912, 2035, 2441
BtsI	GCAGTG	1 cut(s)	1904
BtsIMutI	CAGTG	6 cut(s)	334, 712, 1032, 1842, 1904, 2686
Cac8I	GCNNGC	3 cut(s)	157, 223, 851
CaiI	CAGNNNCTG	2 cut(s)	376, 2799
CciI	TCATGA	2 cut(s)	1702, 2350
CfoI	GCGC	2 cut(s)	161, 1670
Cfr10I	RCCGGY	1 cut(s)	2426
Cfr13I	GGNCC	6 cut(s)	245, 401, 773, 788, 1472, 2688
CseI	GACGC	3 cut(s)	133, 1620, 2490
CsiI	ACCWGGT	1 cut(s)	207
Csp6I	GTAC	5 cut(s)	997, 1499, 1778, 1853, 2151
CviQI	GTAC	5 cut(s)	997, 1499, 1778, 1853, 2151
DdeI	CTNAG	8 cut(s)	513, 569, 596, 636, 845, 993, 2082, 2127
DraI	TTTAAA	3 cut(s)	1725, 1786, 2604
DriI	GACNNNNNGTC	1 cut(s)	1620
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	3 cut(s)	481, 1852, 2314
Eam1105I	GACNNNNNGTC	1 cut(s)	1620
EarI	CTCTTC	3 cut(s)	481, 1852, 2314
EciI	GGCGGA	1 cut(s)	2260
Eco130I	CCWWGG	3 cut(s)	742, 777, 924
Eco31I	GGTCTC	2 cut(s)	198, 579
Eco47I	GGWCC	4 cut(s)	245, 401, 773, 788
Eco57I	CTGAAG	4 cut(s)	426, 1833, 2553, 2784
Eco88I	CYCGRG	1 cut(s)	201
EcoNI	CCTNNNNNAGG	1 cut(s)	2803
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	1288
EcoRII	CCWGG	6 cut(s)	207, 791, 868, 1121, 1813, 1840
EcoT14I	CCWWGG	3 cut(s)	742, 777, 924
EcoT22I	ATGCAT	1 cut(s)	1949
ErhI	CCWWGG	3 cut(s)	742, 777, 924
FalI	AAGNNNNNCTT	2 cut(s)	2323, 2355
FaqI	GGGAC	7 cut(s)	184, 710, 759, 774, 1143, 1204, 1414
FauI	CCCGC	2 cut(s)	198, 858
FauNDI	CATATG	1 cut(s)	1352
FbaI	TGATCA	1 cut(s)	2269
Fnu4HI	GCNGC	5 cut(s)	171, 948, 1629, 1641, 2640
FokI	GGATG	5 cut(s)	411, 1877, 1919, 2042, 2428
Fsp4HI	GCNGC	5 cut(s)	171, 948, 1629, 1641, 2640
FspBI	CTAG	7 cut(s)	236, 387, 546, 692, 933, 1155, 1476
GlaI	GCGC	2 cut(s)	160, 1669
GluI	GCNGC	5 cut(s)	171, 948, 1629, 1641, 2640
GsaI	CCCAGC	1 cut(s)	954
GsuI	CTGGAG	4 cut(s)	852, 1008, 1760, 2214
HaeII	RGCGCY	2 cut(s)	162, 1671
HaeIII	GGCC	4 cut(s)	155, 1474, 1930, 2690
HapII	CCGG	6 cut(s)	141, 148, 1602, 1644, 2156, 2427
HgaI	GACGC	3 cut(s)	133, 1620, 2490
HhaI	GCGC	2 cut(s)	161, 1670
Hin1I	GRCGYC	2 cut(s)	144, 2501
Hin6I	GCGC	2 cut(s)	159, 1668
HinP1I	GCGC	2 cut(s)	159, 1668
HindIII	AAGCTT	1 cut(s)	1650
HpaII	CCGG	6 cut(s)	141, 148, 1602, 1644, 2156, 2427
HphI	GGTGA	9 cut(s)	882, 1448, 1829, 2053, 2405, 2496, 2686, 2727, 2840
Hpy166II	GTNNAC	6 cut(s)	1303, 1512, 1756, 2227, 2677, 2782
Hpy8I	GTNNAC	6 cut(s)	1303, 1512, 1756, 2227, 2677, 2782
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	9 cut(s)	101, 265, 401, 1051, 1773, 2097, 2242, 2562, 2867
HpyCH4IV	ACGT	2 cut(s)	346, 1255
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 167, 846, 920, 1637, 1649, 1676
HpyF3I	CTNAG	8 cut(s)	513, 569, 596, 636, 845, 993, 2082, 2127
HpySE526I	ACGT	2 cut(s)	346, 1255
Hsp92I	GRCGYC	2 cut(s)	144, 2501
HspAI	GCGC	2 cut(s)	159, 1668
Ksp22I	TGATCA	1 cut(s)	2269
LguI	GCTCTTC	1 cut(s)	1852
LmnI	GCTCC	4 cut(s)	1320, 1741, 2159, 2528
Lsp1109I	GCAGC	4 cut(s)	934, 1615, 1652, 2626
LweI	GCATC	7 cut(s)	304, 433, 617, 670, 2413, 2414, 2741
MabI	ACCWGGT	1 cut(s)	207
MaeI	CTAG	7 cut(s)	236, 387, 546, 692, 933, 1155, 1476
MaeII	ACGT	2 cut(s)	346, 1255
MbiI	CCGCTC	1 cut(s)	606
MfeI	CAATTG	1 cut(s)	1383
MflI	RGATCY	7 cut(s)	238, 372, 416, 1262, 2185, 2308, 2489
MhlI	GDGCHC	3 cut(s)	1150, 1305, 1746
MlyI	GAGTC	5 cut(s)	206, 747, 1186, 2045, 2617
MmeI	TCCRAC	2 cut(s)	837, 1042
Mph1103I	ATGCAT	1 cut(s)	1949
MroXI	GAANNNNTTC	4 cut(s)	701, 1651, 2217, 2367
MslI	CAYNNNNRTG	2 cut(s)	582, 1467
MspA1I	CMGCKG	2 cut(s)	185, 1337
MspI	CCGG	6 cut(s)	141, 148, 1602, 1644, 2156, 2427
MspR9I	CCNGG	8 cut(s)	209, 793, 870, 1123, 1603, 1815, 1842, 2157
MssI	GTTTAAAC	1 cut(s)	1786
MunI	CAATTG	1 cut(s)	1383
Mva1269I	GAATGC	1 cut(s)	1949
MvaI	CCWGG	6 cut(s)	209, 793, 870, 1123, 1815, 1842
MwoI	GCNNNNNNNGC	7 cut(s)	84, 167, 846, 920, 1637, 1649, 1676
NciI	CCSGG	2 cut(s)	1603, 2157
NcoI	CCATGG	2 cut(s)	777, 924
NdeI	CATATG	1 cut(s)	1352
NlaIV	GGNNCC	8 cut(s)	775, 790, 1015, 1270, 2161, 2220, 2632, 2689
NmuCI	GTSAC	6 cut(s)	358, 685, 2300, 2393, 2502, 2828
NsiI	ATGCAT	1 cut(s)	1949
NspI	RCATGY	4 cut(s)	225, 266, 450, 2845
PaeI	GCATGC	1 cut(s)	225
PagI	TCATGA	2 cut(s)	1702, 2350
PciI	ACATGT	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	1852
PctI	GAATGC	1 cut(s)	1949
PdmI	GAANNNNTTC	4 cut(s)	701, 1651, 2217, 2367
PfeI	GAWTC	9 cut(s)	390, 411, 455, 600, 929, 2107, 2325, 2345, 2756
PflMI	CCANNNNNTGG	3 cut(s)	748, 899, 1802
PfoI	TCCNGGA	1 cut(s)	2155
PkrI	GCNGC	5 cut(s)	172, 949, 1630, 1642, 2641
PleI	GAGTC	5 cut(s)	205, 746, 1186, 2044, 2616
PmeI	GTTTAAAC	1 cut(s)	1786
PpsI	GAGTC	5 cut(s)	205, 746, 1186, 2044, 2616
Ppu21I	YACGTR	1 cut(s)	1256
PpuMI	RGGWCCY	1 cut(s)	401
PscI	ACATGT	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	6 cut(s)	207, 791, 868, 1121, 1813, 1840
PspFI	CCCAGC	1 cut(s)	950
PspGI	CCWGG	6 cut(s)	207, 791, 868, 1121, 1813, 1840
PspN4I	GGNNCC	8 cut(s)	775, 790, 1015, 1270, 2161, 2220, 2632, 2689
PspPI	GGNCC	6 cut(s)	245, 401, 773, 788, 1472, 2688
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	2 cut(s)	1642, 1899
PstNI	CAGNNNCTG	2 cut(s)	376, 2799
PsuI	RGATCY	7 cut(s)	238, 372, 416, 1262, 2185, 2308, 2489
PvuII	CAGCTG	1 cut(s)	1337
RsaI	GTAC	5 cut(s)	998, 1500, 1779, 1854, 2152
RsaNI	GTAC	5 cut(s)	997, 1499, 1778, 1853, 2151
RseI	CAYNNNNRTG	2 cut(s)	582, 1467
SapI	GCTCTTC	1 cut(s)	1852
SatI	GCNGC	5 cut(s)	171, 948, 1629, 1641, 2640
Sau96I	GGNCC	6 cut(s)	245, 401, 773, 788, 1472, 2688
ScaI	AGTACT	2 cut(s)	998, 2152
SchI	GAGTC	5 cut(s)	206, 747, 1186, 2045, 2617
ScrFI	CCNGG	8 cut(s)	209, 793, 870, 1123, 1603, 1815, 1842, 2157
SduI	GDGCHC	3 cut(s)	1150, 1305, 1746
SexAI	ACCWGGT	1 cut(s)	207
SfaNI	GCATC	7 cut(s)	304, 433, 617, 670, 2413, 2414, 2741
SfcI	CTRYAG	2 cut(s)	1638, 1895
SinI	GGWCC	4 cut(s)	245, 401, 773, 788
SmiMI	CAYNNNNRTG	2 cut(s)	582, 1467
SmlI	CTYRAG	3 cut(s)	396, 2051, 2329
SmoI	CTYRAG	3 cut(s)	396, 2051, 2329
SpeI	ACTAGT	1 cut(s)	1154
SphI	GCATGC	1 cut(s)	225
SsiI	CCGC	9 cut(s)	132, 171, 183, 191, 604, 851, 1127, 2245, 2850
SspI	AATATT	3 cut(s)	763, 1228, 2539
SspMI	CTAG	7 cut(s)	236, 387, 546, 692, 933, 1155, 1476
StyD4I	CCNGG	8 cut(s)	207, 791, 868, 1121, 1601, 1813, 1840, 2155
StyI	CCWWGG	3 cut(s)	742, 777, 924
TaiI	ACGT	2 cut(s)	349, 1258
TaqI	TCGA	3 cut(s)	608, 1211, 1394
TatI	WGTACW	4 cut(s)	996, 1777, 1852, 2150
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	9 cut(s)	390, 411, 455, 600, 929, 2107, 2325, 2345, 2756
TscAI	CASTG	6 cut(s)	334, 712, 1032, 1842, 1904, 2686
TseFI	GTSAC	6 cut(s)	358, 685, 2300, 2393, 2502, 2828
TseI	GCWGC	4 cut(s)	947, 1628, 1640, 2639
Tsp45I	GTSAC	6 cut(s)	358, 685, 2300, 2393, 2502, 2828
TspDTI	ATGAA	9 cut(s)	17, 100, 578, 1380, 1676, 2325, 2367, 2657, 2709
TspGWI	ACGGA	2 cut(s)	154, 1482
TspRI	CASTG	6 cut(s)	334, 712, 1032, 1842, 1904, 2686
Van91I	CCANNNNNTGG	3 cut(s)	748, 899, 1802
VneI	GTGCAC	1 cut(s)	1301
VpaK11BI	GGWCC	4 cut(s)	245, 401, 773, 788
XagI	CCTNNNNNAGG	1 cut(s)	2803
XapI	RAATTY	6 cut(s)	107, 1036, 1288, 2173, 2366, 2704
XbaI	TCTAGA	1 cut(s)	691
XceI	RCATGY	4 cut(s)	225, 266, 450, 2845
XcmI	CCANNNNNNNNNTGG	2 cut(s)	749, 2459
XmnI	GAANNNNTTC	4 cut(s)	701, 1651, 2217, 2367
XspI	CTAG	7 cut(s)	236, 387, 546, 692, 933, 1155, 1476
ZrmI	AGTACT	2 cut(s)	998, 2152
Zsp2I	ATGCAT	1 cut(s)	1949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.