pycom03g07580

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000494
Physical Location & Seq
Reverse (-)
6006553 .. 6015905
9353 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07580.2

Sequence Viewer

Length: 213 bp
ATGTTGGCTGGAGTTCAAGACAAGATCGATCCAATAACTGGCGAGGGTGCTCATGAGCACGCTGCAGGAGACACCGAGGCAGGCGACACACGCATCGATCCTATACTATATAGGTATGCAACGACGTATAAACCAGGAGGTCAAGGAGTAATTATGGGGGGCTATGCACACATATTATTCTGCCGGAGCCACATGTGCAATACATATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002376 GO:0002831 GO:0002833 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016567 GO:0019538 GO:0023051 GO:0030176 GO:0031224 GO:0031226 GO:0031227 GO:0031347 GO:0031349 GO:0031984 GO:0032101 GO:0032103 GO:0032446 GO:0032870 GO:0035690 GO:0036211 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0098827 GO:1900150 GO:1900424 GO:1900426 GO:1901564 GO:1901700 GO:1901701 GO:1902288 GO:1902290 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

71

Amino Acids

7.59

Weight (kDa)

5.65

Isoelectric Point (pI)

29.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 38
AclWI GGATC 2 cut(s) 23, 92
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 1 cut(s) 133
Alw21I GWGCWC 2 cut(s) 52, 60
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 2 cut(s) 23, 92
ApeKI GCWGC 1 cut(s) 62
Bbv12I GWGCWC 2 cut(s) 52, 60
BbvI GCAGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 30
Bsa29I ATCGAT 2 cut(s) 27, 96
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 135
BseCI ATCGAT 2 cut(s) 27, 96
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 49
BshVI ATCGAT 2 cut(s) 27, 96
BsiHKAI GWGCWC 2 cut(s) 52, 60
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 52, 60
Bsp143I GATC 3 cut(s) 24, 28, 97
BspDI ATCGAT 2 cut(s) 27, 96
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 188
BspMAI CTGCAG 1 cut(s) 67
BspPI GGATC 2 cut(s) 23, 92
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 3 cut(s) 24, 28, 97
Bst2UI CCWGG 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 60, 82
BstKTI GATC 3 cut(s) 27, 31, 100
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 3 cut(s) 24, 28, 97
BstMWI GCNNNNNNNGC 2 cut(s) 90, 195
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 49
Bsu15I ATCGAT 2 cut(s) 27, 96
BsuTUI ATCGAT 2 cut(s) 27, 96
Cac8I GCNNGC 2 cut(s) 60, 82
CciI TCATGA 1 cut(s) 52
ClaI ATCGAT 2 cut(s) 27, 96
CviAII CATG 2 cut(s) 53, 193
CviJI RGCY 3 cut(s) 8, 162, 189
CviKI_1 RGCY 3 cut(s) 8, 162, 189
DpnI GATC 3 cut(s) 26, 30, 99
DpnII GATC 3 cut(s) 24, 28, 97
EcoRII CCWGG 1 cut(s) 133
FaeI CATG 2 cut(s) 56, 196
FatI CATG 2 cut(s) 52, 192
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 30
HapII CCGG 1 cut(s) 184
Hin1II CATG 2 cut(s) 56, 196
HpaII CCGG 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 17, 53
Hpy99I CGWCG 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 4 cut(s) 65, 119, 167, 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 195
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 2 cut(s) 56, 196
Kzo9I GATC 3 cut(s) 24, 28, 97
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 6 cut(s) 24, 51, 66, 120, 147, 197
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 102
MaeII ACGT 1 cut(s) 125
MalI GATC 3 cut(s) 26, 30, 99
MboI GATC 3 cut(s) 24, 28, 97
MhlI GDGCHC 2 cut(s) 52, 60
MluCI AATT 1 cut(s) 150
MnlI CCTC 3 cut(s) 37, 70, 131
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 90, 195
NdeII GATC 3 cut(s) 24, 28, 97
NlaIII CATG 2 cut(s) 56, 196
NlaIV GGNNCC 1 cut(s) 188
NspI RCATGY 1 cut(s) 196
PagI TCATGA 1 cut(s) 52
PciI ACATGT 1 cut(s) 192
PflMI CCANNNNNTGG 1 cut(s) 38
PkrI GCNGC 1 cut(s) 64
PscI ACATGT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 67
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 24, 28, 97
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 2 cut(s) 52, 60
SetI ASST 3 cut(s) 116, 128, 142
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 133
TaiI ACGT 1 cut(s) 128
TaqI TCGA 2 cut(s) 27, 96
TasI AATT 1 cut(s) 150
TseI GCWGC 1 cut(s) 62
Van91I CCANNNNNTGG 1 cut(s) 38
XceI RCATGY 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.