Prupe.3G154200_v2.0.a1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000494
Physical Location & Seq
Forward (+)
16984261 .. 17008922
24662 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G154200.2

Sequence Viewer

Length: 1299 bp
ATGGAAGCACATCATCGAACACAGGACTTTGAAGAAACAGACGGTGATGCTGATAACTTGCGCTTATACCAGCAGCTGTACAGCTATGCTACTCGAGGCAACACAAATAGATTTAACGACACTATTGCAAATGAGCTTCATGATCCCAATGCTCGAGTTCAGCTTCTGTCTCGACGAAGCCCCCAGAATAACACATTTGTTCACATAGCTGTGAGCTCCGGCCATGTCGAACTAGCAGCCAAGATCTTGCAAGAACACAAGCCCCTTTTGTTAGAGAAAAACTTTGAAGGCGACACCGCGCTCCACATTGCGGCCAAAGCCGAAGATATAGATACGACAACAAACACTCTTCTCCGTGAAGCACGAGGAACAACAAACATTGAAAATAATGCTGATGTATTGACGTTGCTGAGGATGAAAAATAATGAGGAAAACACTGCCCTGCACGAAGCCCTGATTCAAGGTCACCAATTAGTAGCCAAGTGTTTGATAGAGGCTGATCCTGCCGTTTCACTTTACACTAATAAGGAACAAAAGTCCCCTTTGTATCTGGCCGCTGAACAAGGGCTTGTTGAGATAGTGAAGCTAATAAAAGAAAAAGCAGTTGAGAAGGACACAGAAATTCAAGGCAAGTCCCCGTTGTTTGCTGCAATTCTAGGCCGCCAGAAAAAAGAAGTCCTAAAGATAATATCAAACATGGAAGCAAATATTTTGAACTTAGAAGATGAGAAAGGGAGGACTCCACTGCATTGTGCAGCATCAATTGGTTATTTAGAAGGGGTTCGCTTCTTAGGCAGACGTCTCAAGGATTCTCATCGAAAGGATCATTATGGGAACTTCCCGATCCATTGTGCATCAAGCAAAGGTCATGTCGACATTGTTAAAGAGCTACTTCGACATTGTCCCGATTCAATGGAATTGAGGAACTCAAGTGACCAAAATATACTCCATGTTGCAGCAAGATGTGGCGAGGAAAATCTTGTCAAATATTTTCTCAAGAAGGTTGAGTTTCAAATGTTGATAAACCAAAAAGATAACAGAGGAAATACTCCTTTGCACTTGGCAAAGATGTACCATCATCCCAAGGTTGTGCACCTTTTCATTTTGGATAGGAGGATCAACTTCAAGGTCTTGAATGATAGGGGCATGACAGCTCTTGACATGTCAGAAAGCACTTTGGAAACTAGTGCATCATATCATGGGGTAAGTTTGTGCTATATCTACTTTTATCATATTATTGATGATCATGACTTTGGCTATCATAACCAAGGGACTTCCTTGTTTTATTTAGTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

433

Amino Acids

49.13

Weight (kDa)

6.39

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 802
AccI GTMKAC 1 cut(s) 873
AccII CGCG 1 cut(s) 299
AciI CCGC 4 cut(s) 297, 311, 555, 661
AclWI GGATC 5 cut(s) 137, 494, 831, 838, 1124
AcoI YGGCCR 3 cut(s) 220, 312, 552
AcsI RAATTY 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 799
AfaI GTAC 2 cut(s) 80, 1073
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 1161
AhlI ACTAGT 1 cut(s) 1184
AluBI AGCT 9 cut(s) 76, 84, 136, 163, 209, 216, 586, 889, 1154
AluI AGCT 9 cut(s) 76, 84, 136, 163, 209, 216, 586, 889, 1154
Alw21I GWGCWC 2 cut(s) 218, 1095
Alw26I GTCTC 2 cut(s) 174, 806
Alw44I GTGCAC 1 cut(s) 1091
AlwI GGATC 5 cut(s) 137, 494, 831, 838, 1124
AlwNI CAGNNNCTG 2 cut(s) 76, 166
Ama87I CYCGRG 2 cut(s) 93, 153
AoxI GGCC 4 cut(s) 220, 312, 552, 658
ApaLI GTGCAC 1 cut(s) 1091
ApeKI GCWGC 5 cut(s) 73, 236, 647, 755, 956
ApoI RAATTY 1 cut(s) 621
ArsI GACNNNNNNTTYG 2 cut(s) 855, 887
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 2 cut(s) 63, 301
AsuHPI GGTGA 2 cut(s) 56, 458
AvaI CYCGRG 2 cut(s) 93, 153
BaeGI GKGCMC 1 cut(s) 1095
BanII GRGCYC 1 cut(s) 218
BauI CACGAG 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 218, 1095
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 5 cut(s) 85, 248, 634, 767, 968
BccI CCATC 1 cut(s) 1083
BceAI ACGGC 1 cut(s) 491
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BclI TGATCA 1 cut(s) 1243
BcoDI GTCTC 2 cut(s) 174, 806
BcuI ACTAGT 1 cut(s) 1184
BfaI CTAG 3 cut(s) 233, 656, 1185
BglII AGATCT 1 cut(s) 243
BisI GCNGC 8 cut(s) 74, 237, 312, 555, 648, 661, 756, 957
BlsI GCNGC 8 cut(s) 75, 238, 313, 556, 649, 662, 757, 958
BmeT110I CYCGRG 2 cut(s) 93, 153
BmsI GCATC 4 cut(s) 37, 767, 863, 1199
Bpu10I CCTNAGC 1 cut(s) 410
BpuEI CTTGAG 3 cut(s) 788, 913, 980
BsaBI GATNNNNATC 1 cut(s) 813
BsaHI GRCGYC 1 cut(s) 799
BsaJI CCNNGG 2 cut(s) 1083, 1267
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 813
BseDI CCNNGG 2 cut(s) 1083, 1267
BseGI GGATG 2 cut(s) 420, 1078
BseJI GATNNNNATC 1 cut(s) 813
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 401
BseSI GKGCMC 1 cut(s) 1095
BseXI GCAGC 5 cut(s) 85, 248, 634, 767, 968
BsgI GTGCAG 2 cut(s) 428, 774
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 4 cut(s) 222, 314, 554, 660
BsiHKAI GWGCWC 2 cut(s) 218, 1095
BsiHKCI CYCGRG 2 cut(s) 93, 153
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 4 cut(s) 523, 619, 888, 1285
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 2 cut(s) 174, 806
BsmBI CGTCTC 1 cut(s) 806
BsmFI GGGAC 4 cut(s) 523, 619, 888, 1285
BsnI GGCC 4 cut(s) 222, 314, 554, 660
BsoBI CYCGRG 2 cut(s) 93, 153
Bsp1286I GDGCHC 2 cut(s) 218, 1095
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 7 cut(s) 142, 243, 499, 823, 843, 1116, 1243
BspACI CCGC 4 cut(s) 297, 311, 555, 661
BspANI GGCC 4 cut(s) 222, 314, 554, 660
BspCNI CTCAG 1 cut(s) 402
BspFNI CGCG 1 cut(s) 299
BspHI TCATGA 2 cut(s) 139, 1246
BspPI GGATC 5 cut(s) 137, 494, 831, 838, 1124
BsrDI GCAATG 1 cut(s) 306
BsrGI TGTACA 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 1083, 1267
BssMI GATC 7 cut(s) 142, 243, 499, 823, 843, 1116, 1243
BssNI GRCGYC 1 cut(s) 799
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 1083, 1267
Bst2BI CACGAG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 354
BstACI GRCGYC 1 cut(s) 799
BstAUI TGTACA 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 410, 718, 790
BstEII GGTNACC 1 cut(s) 464
BstF5I GGATG 2 cut(s) 420, 1078
BstFNI CGCG 1 cut(s) 299
BstHHI GCGC 2 cut(s) 63, 301
BstKTI GATC 7 cut(s) 145, 246, 502, 826, 846, 1119, 1246
BstMAI GTCTC 2 cut(s) 174, 806
BstMBI GATC 7 cut(s) 142, 243, 499, 823, 843, 1116, 1243
BstMWI GCNNNNNNNGC 3 cut(s) 317, 503, 792
BstNSI RCATGY 1 cut(s) 1165
BstPI GGTNACC 1 cut(s) 464
BstSLI GKGCMC 1 cut(s) 1095
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 5 cut(s) 85, 248, 634, 767, 968
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 4 cut(s) 222, 314, 554, 660
BtsCI GGATG 2 cut(s) 420, 1078
BtsI GCAGTG 2 cut(s) 435, 743
BtsIMutI CAGTG 2 cut(s) 435, 743
CaiI CAGNNNCTG 2 cut(s) 76, 166
CciI TCATGA 2 cut(s) 139, 1246
CfoI GCGC 2 cut(s) 63, 301
Csp6I GTAC 2 cut(s) 79, 1072
CviAII CATG 9 cut(s) 140, 224, 697, 869, 950, 1147, 1162, 1199, 1247
CviQI GTAC 2 cut(s) 79, 1072
DdeI CTNAG 3 cut(s) 410, 718, 790
DpnI GATC 7 cut(s) 144, 245, 501, 825, 845, 1118, 1245
DpnII GATC 7 cut(s) 142, 243, 499, 823, 843, 1116, 1243
EaeI YGGCCR 3 cut(s) 220, 312, 552
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 1083, 1267
Eco24I GRGCYC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 216
Eco88I CYCGRG 2 cut(s) 93, 153
Eco91I GGTNACC 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 216
EcoO65I GGTNACC 1 cut(s) 464
EcoT14I CCWWGG 2 cut(s) 1083, 1267
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 2 cut(s) 1083, 1267
Esp3I CGTCTC 1 cut(s) 806
FaeI CATG 9 cut(s) 143, 227, 700, 872, 953, 1150, 1165, 1202, 1250
FalI AAGNNNNNCTT 2 cut(s) 876, 908
FaqI GGGAC 4 cut(s) 523, 619, 888, 1285
FatI CATG 9 cut(s) 139, 223, 696, 868, 949, 1146, 1161, 1198, 1246
FbaI TGATCA 1 cut(s) 1243
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 8 cut(s) 74, 237, 312, 555, 648, 661, 756, 957
FokI GGATG 2 cut(s) 427, 1065
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 8 cut(s) 74, 237, 312, 555, 648, 661, 756, 957
FspBI CTAG 3 cut(s) 233, 656, 1185
GlaI GCGC 2 cut(s) 62, 300
GluI GCNGC 8 cut(s) 74, 237, 312, 555, 648, 661, 756, 957
HaeIII GGCC 4 cut(s) 222, 314, 554, 660
HapII CCGG 1 cut(s) 219
HhaI GCGC 2 cut(s) 63, 301
Hin1I GRCGYC 1 cut(s) 799
Hin1II CATG 9 cut(s) 143, 227, 700, 872, 953, 1150, 1165, 1202, 1250
Hin6I GCGC 2 cut(s) 61, 299
HinP1I GCGC 2 cut(s) 61, 299
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HinfI GANTC 4 cut(s) 457, 739, 809, 908
HpaII CCGG 1 cut(s) 219
HphI GGTGA 2 cut(s) 56, 458
Hpy166II GTNNAC 3 cut(s) 202, 874, 1093
Hpy188I TCNGA 1 cut(s) 1168
Hpy188III TCNNGA 8 cut(s) 140, 171, 841, 905, 997, 1132, 1157, 1247
Hpy8I GTNNAC 3 cut(s) 202, 874, 1093
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 4 cut(s) 281, 604, 770, 994
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 2 cut(s) 404, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 503, 792
HpyF3I CTNAG 3 cut(s) 410, 718, 790
HpySE526I ACGT 2 cut(s) 404, 799
Hsp92I GRCGYC 1 cut(s) 799
Hsp92II CATG 9 cut(s) 143, 227, 700, 872, 953, 1150, 1165, 1202, 1250
HspAI GCGC 2 cut(s) 61, 299
Ksp22I TGATCA 1 cut(s) 1243
Kzo9I GATC 7 cut(s) 142, 243, 499, 823, 843, 1116, 1243
LmnI GCTCC 2 cut(s) 221, 306
LpnPI CCDG 9 cut(s) 8, 83, 197, 232, 455, 467, 516, 536, 677
Lsp1109I GCAGC 5 cut(s) 85, 248, 634, 767, 968
LweI GCATC 4 cut(s) 37, 767, 863, 1199
MaeI CTAG 3 cut(s) 233, 656, 1185
MaeII ACGT 2 cut(s) 404, 799
MaeIII GTNAC 2 cut(s) 464, 932
MalI GATC 7 cut(s) 144, 245, 501, 825, 845, 1118, 1245
MboI GATC 7 cut(s) 142, 243, 499, 823, 843, 1116, 1243
MboII GAAGA 4 cut(s) 44, 335, 341, 734
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 2 cut(s) 218, 1095
MluCI AATT 5 cut(s) 470, 621, 651, 762, 917
MlyI GAGTC 1 cut(s) 733
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 3 cut(s) 114, 882, 1297
MslI CAYNNNNRTG 1 cut(s) 209
MspA1I CMGCKG 2 cut(s) 76, 557
MspI CCGG 1 cut(s) 219
MunI CAATTG 1 cut(s) 762
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 317, 503, 792
NdeII GATC 7 cut(s) 142, 243, 499, 823, 843, 1116, 1243
NlaIII CATG 9 cut(s) 143, 227, 700, 872, 953, 1150, 1165, 1202, 1250
NmuCI GTSAC 2 cut(s) 464, 932
NspI RCATGY 1 cut(s) 1165
PaeR7I CTCGAG 2 cut(s) 93, 153
PagI TCATGA 2 cut(s) 139, 1246
PciI ACATGT 1 cut(s) 1161
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 3 cut(s) 457, 809, 908
PflFI GACNNNGTC 1 cut(s) 900
PkrI GCNGC 8 cut(s) 75, 238, 313, 556, 649, 662, 757, 958
PleI GAGTC 1 cut(s) 733
PpsI GAGTC 1 cut(s) 733
PscI ACATGT 1 cut(s) 1161
Psp124BI GAGCTC 1 cut(s) 218
PspEI GGTNACC 1 cut(s) 464
PspXI VCTCGAGB 2 cut(s) 93, 153
PstNI CAGNNNCTG 2 cut(s) 76, 166
PsuI RGATCY 1 cut(s) 243
PsyI GACNNNGTC 1 cut(s) 900
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 2 cut(s) 80, 1073
RsaNI GTAC 2 cut(s) 79, 1072
RseI CAYNNNNRTG 1 cut(s) 209
SacI GAGCTC 1 cut(s) 218
SalI GTCGAC 1 cut(s) 872
SaqAI TTAA 3 cut(s) 114, 882, 1297
SatI GCNGC 8 cut(s) 74, 237, 312, 555, 648, 661, 756, 957
Sau3AI GATC 7 cut(s) 142, 243, 499, 823, 843, 1116, 1243
SchI GAGTC 1 cut(s) 733
SduI GDGCHC 2 cut(s) 218, 1095
SfaNI GCATC 4 cut(s) 37, 767, 863, 1199
Sfr274I CTCGAG 2 cut(s) 93, 153
SlaI CTCGAG 2 cut(s) 93, 153
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 5 cut(s) 93, 153, 803, 928, 995
SmoI CTYRAG 5 cut(s) 93, 153, 803, 928, 995
SpeI ACTAGT 1 cut(s) 1184
Sse9I AATT 5 cut(s) 470, 621, 651, 762, 917
SsiI CCGC 4 cut(s) 297, 311, 555, 661
SspI AATATT 2 cut(s) 709, 989
SspMI CTAG 3 cut(s) 233, 656, 1185
SstI GAGCTC 1 cut(s) 218
StyI CCWWGG 2 cut(s) 1083, 1267
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 2 cut(s) 407, 802
TaqI TCGA 8 cut(s) 16, 94, 154, 172, 228, 817, 873, 895
TasI AATT 5 cut(s) 470, 621, 651, 762, 917
TatI WGTACW 1 cut(s) 78
TauI GCSGC 3 cut(s) 314, 557, 663
TfiI GAWTC 3 cut(s) 457, 809, 908
Tru1I TTAA 3 cut(s) 114, 882, 1297
Tru9I TTAA 3 cut(s) 114, 882, 1297
TscAI CASTG 2 cut(s) 442, 750
TseFI GTSAC 2 cut(s) 464, 932
TseI GCWGC 5 cut(s) 73, 236, 647, 755, 956
Tsp45I GTSAC 2 cut(s) 464, 932
TspDTI ATGAA 3 cut(s) 128, 431, 1090
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 2 cut(s) 442, 750
Tth111I GACNNNGTC 1 cut(s) 900
VneI GTGCAC 1 cut(s) 1091
XapI RAATTY 1 cut(s) 621
XceI RCATGY 1 cut(s) 1165
XhoI CTCGAG 2 cut(s) 93, 153
XmiI GTMKAC 1 cut(s) 873
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 3 cut(s) 233, 656, 1185
ZraI GACGTC 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.