RLG00000023472

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000494
Physical Location & Seq
Forward (+)
24351253 .. 24352641
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023472

Sequence Viewer

Length: 1272 bp
ATGATGGGGGCAATATCAAGAATGGGATTTACCATCAACCTAAGAGATGAGGAAGGGAGAAATCCACTTCATTATGCAGCGTCAATAGGTTATTTAGAAGGAGTTTGCATTTTCTTACGCAAATGTTCATCAGAGTCTCATTATTGTAATCAACCTGATAATAGTGGCACGTTTCCTATCTATTCTGCATCAAGAAAAGGCCATGTTAACATTGTTAGAGCGCTCCTTCAACATTTTCCTGCTTTAAAGGAGGAACCCATGAGTTCAGAAGGACAAAATTTGCTTCATGTTGCAGCAAAATTTGGAAGACATAATCTTGTTAGATATTTTCTTCAAAACAGGGATAAATTTCAGATGTTGATTAATCACAAAGATAACCATGGAAATACTCCTTTACATTTGGCGACAATTCACAAACAGGCCAGAGTGGTGAAATATTTGACATGGGATAGAAGGACCAACTTAAACCTTTCCAACAGGAAAGACATGACAGCTCTTGATATTGCAGAGAGCACAAAGGAAGTAATTGGTTCATTTCGTGGGAGGCTAACTTGGGTAGCACTAAAATCTGCCGGTGCAAAGAGAGCTAAACATTTGCATGTTCTCCGACGAACCACACAGAGTCCTGCAGAAGATGTTGTAAGAAACACAGATGGACAAGTTGCATCCGAAAATGAAGATGTTACTGCTGAAATCATTAAAGCTTGTAGACCGGATAGAGAAAATTTACAGTTAAATGACAAGAAAAGTATTAGAGACAGGGTCAACACTCTACTGGTGATGACCACTCTTGTTGCTACAGTGACATTTGCAGCTGGTTTCACAATGCCCGGTGGTTATAACAACTCCAGCCCTCATGAAGGCAGAGCAACCTTGCTAACAAGATCTATGTTCCAAGTCTTTGTGATCTCCAACACCATAGCTATGTATAGCTCCGTCTTTGTGGCAGTTACACTCATTTGGGCACAATCTGGTGATCTGATTATGGTATTCACAGGTCTTCGTTTGGTAATGCCAGTGTTGGGGATTGCACTAGCCATGCTGTCGTTAGCATTTATGGCTGGCGTTTATGTGGTACTAAGCAATCTTCCTTGGCTTGCGTCCTTGGTGTTGGCCATCGGAATAGTTTTTCTCTACACAGTCTTGGTACTTTTCACTCCGTTCTTCTTTCCAGGGTCAAAACCCACTTTCCCTCACATCAGCTATTATCCCTTTTATCTGGTAGCATTATTAGCTTCTGGAAGTCAATGGAATGACATGGATGAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04310 map04310
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

424

Amino Acids

47.32

Weight (kDa)

9.48

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 11 - 78 2.4e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 89 - 156 8e-11 Ankyrin repeats (3 copies)
Ank_5 PF13857 90 - 135 6.5e-07 Ankyrin repeats (many copies)
Ank_4 PF13637 95 - 147 1.1e-07 Ankyrin repeats (many copies)
Ank_5 PF13857 116 - 169 1.5e-06 Ankyrin repeats (many copies)
PGG PF13962 249 - 359 1e-28 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 840
AccI GTMKAC 1 cut(s) 709
AcoI YGGCCR 1 cut(s) 1113
AcsI RAATTY 4 cut(s) 277, 299, 347, 724
AfaI GTAC 2 cut(s) 1077, 1149
AfeI AGCGCT 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 860, 1022
AgsI TTSAA 2 cut(s) 230, 335
AjnI CCWGG 1 cut(s) 1171
AluBI AGCT 8 cut(s) 494, 587, 704, 815, 923, 933, 1203, 1235
AluI AGCT 8 cut(s) 494, 587, 704, 815, 923, 933, 1203, 1235
Alw21I GWGCWC 1 cut(s) 515
Alw26I GTCTC 2 cut(s) 141, 750
Aor51HI AGCGCT 1 cut(s) 222
AoxI GGCC 3 cut(s) 199, 420, 1113
ApeKI GCWGC 3 cut(s) 77, 293, 812
ApoI RAATTY 4 cut(s) 277, 299, 347, 724
AseI ATTAAT 1 cut(s) 363
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 456
AsuC2I CCSGG 1 cut(s) 831
AsuHPI GGTGA 3 cut(s) 442, 790, 986
AvaII GGWCC 1 cut(s) 456
BaeGI GKGCMC 1 cut(s) 967
BalI TGGCCA 1 cut(s) 1115
BbsI GAAGAC 2 cut(s) 313, 992
Bbv12I GWGCWC 1 cut(s) 515
BbvI GCAGC 3 cut(s) 89, 305, 824
BccI CCATC 3 cut(s) 41, 647, 1124
BciT130I CCWGG 1 cut(s) 1173
BcnI CCSGG 1 cut(s) 831
BcoDI GTCTC 2 cut(s) 141, 750
BfaI CTAG 2 cut(s) 1034, 1270
BfmI CTRYAG 2 cut(s) 627, 798
BfoI RGCGCY 1 cut(s) 224
BglII AGATCT 1 cut(s) 884
BisI GCNGC 3 cut(s) 78, 294, 813
BlsI GCNGC 3 cut(s) 79, 295, 814
Bme1390I CCNGG 2 cut(s) 831, 1173
Bme18I GGWCC 1 cut(s) 456
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 2 cut(s) 831, 1173
BmsI GCATC 2 cut(s) 197, 674
BpiI GAAGAC 2 cut(s) 313, 992
BpmI CTGGAG 1 cut(s) 832
BpuMI CCSGG 1 cut(s) 831
BsaJI CCNNGG 4 cut(s) 379, 1091, 1104, 1172
BsaWI WCCGGW 1 cut(s) 712
Bsc4I CCNNNNNNNGG 2 cut(s) 860, 1022
Bse118I RCCGGY 1 cut(s) 572
Bse1I ACTGG 2 cut(s) 780, 1016
BseBI CCWGG 1 cut(s) 1173
BseDI CCNNGG 4 cut(s) 379, 1091, 1104, 1172
BseGI GGATG 2 cut(s) 665, 1267
BseLI CCNNNNNNNGG 2 cut(s) 860, 1022
BseNI ACTGG 2 cut(s) 780, 1016
BseSI GKGCMC 1 cut(s) 967
BseXI GCAGC 3 cut(s) 89, 305, 824
BshFI GGCC 3 cut(s) 201, 422, 1115
BsiHKAI GWGCWC 1 cut(s) 515
BsiSI CCGG 3 cut(s) 573, 713, 831
BslI CCNNNNNNNGG 2 cut(s) 860, 1022
BsmAI GTCTC 2 cut(s) 141, 750
BsnI GGCC 3 cut(s) 201, 422, 1115
Bsp1286I GDGCHC 2 cut(s) 515, 967
Bsp143I GATC 3 cut(s) 884, 906, 976
Bsp19I CCATGG 1 cut(s) 379
BspANI GGCC 3 cut(s) 201, 422, 1115
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 572
BsrI ACTGG 2 cut(s) 780, 1016
BssAI RCCGGY 1 cut(s) 572
BssECI CCNNGG 4 cut(s) 379, 1091, 1104, 1172
BssMI GATC 3 cut(s) 884, 906, 976
BssT1I CCWWGG 3 cut(s) 379, 1091, 1104
Bst2UI CCWGG 1 cut(s) 1173
Bst4CI ACNGT 3 cut(s) 732, 802, 1141
BstC8I GCNNGC 2 cut(s) 1063, 1098
BstDEI CTNAG 2 cut(s) 41, 1079
BstDSI CCRYGG 1 cut(s) 379
BstENI CCTNNNNNAGG 1 cut(s) 858
BstF5I GGATG 2 cut(s) 665, 1267
BstH2I RGCGCY 1 cut(s) 224
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 3 cut(s) 887, 909, 979
BstMAI GTCTC 2 cut(s) 141, 750
BstMBI GATC 3 cut(s) 884, 906, 976
BstMWI GCNNNNNNNGC 3 cut(s) 584, 1058, 1232
BstNI CCWGG 1 cut(s) 1173
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 2 cut(s) 829, 1171
BstSFI CTRYAG 2 cut(s) 627, 798
BstSLI GKGCMC 1 cut(s) 967
BstV1I GCAGC 3 cut(s) 89, 305, 824
BstV2I GAAGAC 2 cut(s) 313, 992
BstX2I RGATCY 1 cut(s) 884
BstYI RGATCY 1 cut(s) 884
BsuRI GGCC 3 cut(s) 201, 422, 1115
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 2 cut(s) 665, 1267
BtsIMutI CAGTG 2 cut(s) 807, 1023
Cac8I GCNNGC 2 cut(s) 1063, 1098
CciI TCATGA 1 cut(s) 856
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 572
Cfr13I GGNCC 1 cut(s) 456
CseI GACGC 2 cut(s) 69, 1089
Csp6I GTAC 2 cut(s) 1076, 1148
CspCI CAANNNNNGTGG 2 cut(s) 775, 810
CviQI GTAC 2 cut(s) 1076, 1148
DdeI CTNAG 2 cut(s) 41, 1079
DpnI GATC 3 cut(s) 886, 908, 978
DpnII GATC 3 cut(s) 884, 906, 976
DraI TTTAAA 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 1113
Eco130I CCWWGG 3 cut(s) 379, 1091, 1104
Eco47I GGWCC 1 cut(s) 456
Eco47III AGCGCT 1 cut(s) 222
EcoNI CCTNNNNNAGG 1 cut(s) 858
EcoRII CCWGG 1 cut(s) 1171
EcoT14I CCWWGG 3 cut(s) 379, 1091, 1104
ErhI CCWWGG 3 cut(s) 379, 1091, 1104
FblI GTMKAC 1 cut(s) 709
Fnu4HI GCNGC 3 cut(s) 78, 294, 813
FokI GGATG 1 cut(s) 652
Fsp4HI GCNGC 3 cut(s) 78, 294, 813
FspBI CTAG 2 cut(s) 1034, 1270
GlaI GCGC 1 cut(s) 222
GluI GCNGC 3 cut(s) 78, 294, 813
GsuI CTGGAG 1 cut(s) 832
HaeII RGCGCY 1 cut(s) 224
HaeIII GGCC 3 cut(s) 201, 422, 1115
HapII CCGG 3 cut(s) 573, 713, 831
HgaI GACGC 2 cut(s) 69, 1089
HhaI GCGC 1 cut(s) 223
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HincII GTYRAC 2 cut(s) 208, 766
HindII GTYRAC 2 cut(s) 208, 766
HindIII AAGCTT 1 cut(s) 702
HinfI GANTC 2 cut(s) 134, 622
HpaI GTTAAC 1 cut(s) 208
HpaII CCGG 3 cut(s) 573, 713, 831
HphI GGTGA 3 cut(s) 442, 790, 986
Hpy166II GTNNAC 3 cut(s) 208, 710, 766
Hpy188I TCNGA 7 cut(s) 133, 268, 354, 608, 670, 981, 1121
Hpy188III TCNNGA 5 cut(s) 18, 192, 497, 857, 1239
Hpy8I GTNNAC 3 cut(s) 208, 710, 766
Hpy99I CGWCG 1 cut(s) 612
HpyAV CCTTC 6 cut(s) 47, 92, 236, 263, 447, 854
HpyCH4III ACNGT 3 cut(s) 732, 802, 1141
HpyCH4IV ACGT 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 1058, 1232
HpyF3I CTNAG 2 cut(s) 41, 1079
HpySE526I ACGT 1 cut(s) 170
HspAI GCGC 1 cut(s) 221
KspAI GTTAAC 1 cut(s) 208
Kzo9I GATC 3 cut(s) 884, 906, 976
LmnI GCTCC 2 cut(s) 228, 938
Lsp1109I GCAGC 3 cut(s) 89, 305, 824
LweI GCATC 2 cut(s) 197, 674
MaeI CTAG 2 cut(s) 1034, 1270
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 3 cut(s) 682, 802, 949
MalI GATC 3 cut(s) 886, 908, 978
MboI GATC 3 cut(s) 884, 906, 976
MboII GAAGA 7 cut(s) 318, 323, 644, 689, 992, 1079, 1156
MflI RGATCY 1 cut(s) 884
MhlI GDGCHC 2 cut(s) 515, 967
MlsI TGGCCA 1 cut(s) 1115
MluCI AATT 6 cut(s) 277, 299, 347, 408, 525, 724
MluNI TGGCCA 1 cut(s) 1115
MlyI GAGTC 2 cut(s) 143, 631
MmeI TCCRAC 3 cut(s) 498, 631, 936
MnlI CCTC 5 cut(s) 43, 244, 537, 864, 1203
Mox20I TGGCCA 1 cut(s) 1115
MscI TGGCCA 1 cut(s) 1115
MseI TTAA 6 cut(s) 207, 245, 363, 464, 699, 734
MslI CAYNNNNRTG 2 cut(s) 597, 923
Msp20I TGGCCA 1 cut(s) 1115
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 3 cut(s) 573, 713, 831
MspR9I CCNGG 2 cut(s) 831, 1173
MvaI CCWGG 1 cut(s) 1173
MwoI GCNNNNNNNGC 3 cut(s) 584, 1058, 1232
NciI CCSGG 1 cut(s) 831
NcoI CCATGG 1 cut(s) 379
NdeII GATC 3 cut(s) 884, 906, 976
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 802
NspI RCATGY 1 cut(s) 602
PagI TCATGA 1 cut(s) 856
PflFI GACNNNGTC 1 cut(s) 761
PkrI GCNGC 3 cut(s) 79, 295, 814
PleI GAGTC 2 cut(s) 142, 630
PpsI GAGTC 2 cut(s) 142, 630
PshBI ATTAAT 1 cut(s) 363
PsiI TTATAA 1 cut(s) 840
Psp6I CCWGG 1 cut(s) 1171
PspGI CCWGG 1 cut(s) 1171
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 456
PstI CTGCAG 1 cut(s) 631
PsuI RGATCY 1 cut(s) 884
PsyI GACNNNGTC 1 cut(s) 761
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 2 cut(s) 1077, 1149
RsaNI GTAC 2 cut(s) 1076, 1148
RseI CAYNNNNRTG 2 cut(s) 597, 923
SaqAI TTAA 6 cut(s) 207, 245, 363, 464, 699, 734
SatI GCNGC 3 cut(s) 78, 294, 813
Sau3AI GATC 3 cut(s) 884, 906, 976
Sau96I GGNCC 1 cut(s) 456
SchI GAGTC 2 cut(s) 143, 631
ScrFI CCNGG 2 cut(s) 831, 1173
SduI GDGCHC 2 cut(s) 515, 967
SfaNI GCATC 2 cut(s) 197, 674
SfcI CTRYAG 2 cut(s) 627, 798
SinI GGWCC 1 cut(s) 456
SmiMI CAYNNNNRTG 2 cut(s) 597, 923
Sse9I AATT 6 cut(s) 277, 299, 347, 408, 525, 724
SspI AATATT 1 cut(s) 437
SspMI CTAG 2 cut(s) 1034, 1270
StyD4I CCNGG 2 cut(s) 829, 1171
StyI CCWWGG 3 cut(s) 379, 1091, 1104
TaaI ACNGT 3 cut(s) 732, 802, 1141
TaiI ACGT 1 cut(s) 173
TasI AATT 6 cut(s) 277, 299, 347, 408, 525, 724
Tru1I TTAA 6 cut(s) 207, 245, 363, 464, 699, 734
Tru9I TTAA 6 cut(s) 207, 245, 363, 464, 699, 734
TscAI CASTG 2 cut(s) 807, 1023
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 3 cut(s) 77, 293, 812
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 6 cut(s) 59, 117, 275, 522, 690, 873
TspGWI ACGGA 2 cut(s) 925, 1149
TspRI CASTG 2 cut(s) 807, 1023
Tth111I GACNNNGTC 1 cut(s) 761
VpaK11BI GGWCC 1 cut(s) 456
VspI ATTAAT 1 cut(s) 363
XagI CCTNNNNNAGG 1 cut(s) 858
XapI RAATTY 4 cut(s) 277, 299, 347, 724
XceI RCATGY 1 cut(s) 602
XmiI GTMKAC 1 cut(s) 709
XspI CTAG 2 cut(s) 1034, 1270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.