Rmu_co8268563.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8268563.1
OG0000494
Physical Location & Seq
Forward (+)
234 .. 740
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8268563.1_g000001.1.cds

Sequence Viewer

Length: 507 bp
atgcctcctcttgcacttgcagcatatataggtaactttgatgccgtacgctgcttgttagacaaatgcagtaacgatgcatacaggcaggacacaaatggattctttccgatatatatagcgtcccgaaacggcaacatcaagatagttcaagaattcctcaatcattgcccagacttgaaggagttacatgacaagcaaggccggaacattcttcatgtggcagctgcgtatggacgagctaagctggttgaatatatgcttggaacgaccaagcttgaaatgcttctcaacgaaagagataatttcggaaacacccctctacacgtagctgttcagaactggcatcctaggattgtcaaaattctgacccgggataagagagttcaccaaaagattctcaacaataagggcatgacagcatttgatattgcagagaagtccgaggtgcataaagacatgctgtttcgatgggtattttctcaaaacaacttactatttttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002376 GO:0002831 GO:0002833 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016567 GO:0019538 GO:0023051 GO:0030176 GO:0031224 GO:0031226 GO:0031227 GO:0031347 GO:0031349 GO:0031984 GO:0032101 GO:0032103 GO:0032446 GO:0032870 GO:0035690 GO:0036211 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070647 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0098827 GO:1900150 GO:1900424 GO:1900426 GO:1901564 GO:1901700 GO:1901701 GO:1902288 GO:1902290 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

168

Amino Acids

19.43

Weight (kDa)

9.17

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03670 AT4G03440 AT4G03440 AT4G03440 AT4G03450 AT4G03450 AT4G03460 AT4G03460 AT4G03470 AT4G03480 AT4G03480 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03490 AT4G03500 AT4G03500 AT4G03500 AT4G03505 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G05040 AT4G14390 AT4G14390 AT4G14390 AT4G14390 AT4G14400 AT4G14400 AT4G14400
fragaria_vesca FvH4_3g05910 FvH4_3g23320
malus_domestica MD03G1094000.v1.1 MD03G1094200.v1.1 MD03G1094600.v1.1 MD12G1218700.v1.1
prunus_persica Prupe.3G135100_v2.0.a1 Prupe.3G135200_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G135700_v2.0.a1 Prupe.3G142400_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G153800_v2.0.a1 Prupe.3G154000_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154200_v2.0.a1 Prupe.3G154600_v2.0.a1 Prupe.3G154700_v2.0.a1 Prupe.3G155200_v2.0.a1 Prupe.3G155300_v2.0.a1 Prupe.8G110300_v2.0.a1
pyrus_communis pycom03g07280 pycom03g07580 pycom03g07660 pycom03g07700 pycom03g07710
rosa_chinensis RchiOBHm_Chr3g0461161 RchiOBHm_Chr5g0041111
rosa_laevigata RLG00000023472 RLG00000023475 RLG00000034025
rosa_multiflora Rmu_co8126040.1_g000001 Rmu_co8268563.1_g000001 Rmu_sc0000964.1_g000014 Rmu_sc0028923.1_g000001 Rmu_sc0042194.1_g000001
rosa_roxburghii Rroxscaffold_1G00039610 Rroxscaffold_6G00401360
rosa_rugosa Rorug03G0048600 Rorug03G0048700 Rorug05G0190000
rosa_samantha Rh3AG105900 Rh3BG110200 Rh3BG268400 Rh3CG111800 Rh3DG111900 Rh5AG275800 Rh5BG280500 Rh5CG312600 Rh5DG288800
rosa_wichuraiana Rw3G009080 Rw5G025920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 155, 363
AfaI GTAC 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 4 cut(s) 152, 181, 254, 281
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 5 cut(s) 227, 242, 247, 277, 332
AluI AGCT 5 cut(s) 227, 242, 247, 277, 332
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 4 cut(s) 20, 51, 224, 227
ApoI RAATTY 2 cut(s) 155, 363
Asp700I GAANNNNTTC 1 cut(s) 285
AspA2I CCTAGG 1 cut(s) 350
AsuC2I CCSGG 2 cut(s) 373, 374
AsuHPI GGTGA 1 cut(s) 380
AvaI CYCGRG 1 cut(s) 372
AvrII CCTAGG 1 cut(s) 350
BbvI GCAGC 4 cut(s) 32, 38, 214, 236
BccI CCATC 1 cut(s) 465
BceAI ACGGC 2 cut(s) 29, 148
BcnI CCSGG 2 cut(s) 373, 374
BfaI CTAG 1 cut(s) 351
BisI GCNGC 4 cut(s) 21, 52, 225, 228
BlnI CCTAGG 1 cut(s) 350
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 4 cut(s) 22, 53, 226, 229
Bme1390I CCNGG 2 cut(s) 373, 374
BmeT110I CYCGRG 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 373, 374
BmsI GCATC 3 cut(s) 31, 67, 355
Bpu1102I GCTNAGC 1 cut(s) 243
BpuMI CCSGG 2 cut(s) 373, 374
BsaAI YACGTR 1 cut(s) 328
BsaJI CCNNGG 3 cut(s) 350, 372, 444
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 166
BseDI CCNNGG 3 cut(s) 350, 372, 444
BseGI GGATG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 4 cut(s) 32, 38, 214, 236
BshFI GGCC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 2 cut(s) 205, 373
BsiWI CGTACG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 372
Bsp1720I GCTNAGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 166
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 350, 372, 444
BssT1I CCWWGG 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 20, 283
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 371, 372
BstV1I GCAGC 4 cut(s) 32, 38, 214, 236
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 346
Cfr9I CCCGGG 1 cut(s) 372
CseI GACGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 47
CviAII CATG 4 cut(s) 191, 218, 415, 460
CviJI RGCY 6 cut(s) 204, 227, 242, 247, 277, 332
CviKI_1 RGCY 6 cut(s) 204, 227, 242, 247, 277, 332
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 372
EcoRI GAATTC 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 4 cut(s) 194, 221, 418, 463
FaqI GGGAC 1 cut(s) 109
FatI CATG 4 cut(s) 190, 217, 414, 459
Fnu4HI GCNGC 4 cut(s) 21, 52, 225, 228
FokI GGATG 1 cut(s) 333
Fsp4HI GCNGC 4 cut(s) 21, 52, 225, 228
FspBI CTAG 1 cut(s) 351
GluI GCNGC 4 cut(s) 21, 52, 225, 228
HaeIII GGCC 1 cut(s) 204
HapII CCGG 2 cut(s) 205, 373
HgaI GACGC 1 cut(s) 111
Hin1II CATG 4 cut(s) 194, 221, 418, 463
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 2 cut(s) 102, 397
HpaII CCGG 2 cut(s) 205, 373
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 5 cut(s) 111, 311, 339, 369, 445
Hpy188III TCNNGA 3 cut(s) 126, 142, 152
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 6 cut(s) 14, 20, 69, 80, 434, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 283
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 4 cut(s) 194, 221, 418, 463
LpnPI CCDG 7 cut(s) 70, 74, 186, 218, 233, 328, 386
Lsp1109I GCAGC 4 cut(s) 32, 38, 214, 236
LweI GCATC 3 cut(s) 31, 67, 355
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 3 cut(s) 32, 71, 186
MboII GAAGA 1 cut(s) 206
MluCI AATT 3 cut(s) 155, 304, 363
MnlI CCTC 5 cut(s) 15, 18, 170, 330, 439
Mph1103I ATGCAT 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 2 cut(s) 205, 373
MspR9I CCNGG 2 cut(s) 373, 374
MwoI GCNNNNNNNGC 2 cut(s) 20, 283
NciI CCSGG 2 cut(s) 373, 374
NlaIII CATG 4 cut(s) 194, 221, 418, 463
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 2 cut(s) 102, 397
Pfl23II CGTACG 1 cut(s) 46
PkrI GCNGC 4 cut(s) 22, 53, 226, 229
Ppu21I YACGTR 1 cut(s) 328
PspLI CGTACG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SatI GCNGC 4 cut(s) 21, 52, 225, 228
ScrFI CCNGG 2 cut(s) 373, 374
SetI ASST 8 cut(s) 34, 229, 244, 249, 279, 330, 334, 450
SfaNI GCATC 3 cut(s) 31, 67, 355
SmaI CCCGGG 1 cut(s) 374
Sse9I AATT 3 cut(s) 155, 304, 363
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 2 cut(s) 371, 372
StyI CCWWGG 1 cut(s) 350
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 469
TasI AATT 3 cut(s) 155, 304, 363
TfiI GAWTC 2 cut(s) 102, 397
TseI GCWGC 4 cut(s) 20, 51, 224, 227
TspDTI ATGAA 1 cut(s) 206
TspMI CCCGGG 1 cut(s) 372
XapI RAATTY 2 cut(s) 155, 363
XceI RCATGY 1 cut(s) 463
XmaI CCCGGG 1 cut(s) 372
XmaJI CCTAGG 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.